Wall clock time and date at job start Mon Mar 30 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.45326 * 2 1 4 4 C 1.53043 * 109.46305 * 240.03110 * 2 1 3 5 5 H 1.08994 * 109.50365 * 179.17670 * 4 2 1 6 6 C 1.50703 * 109.50189 * 59.10375 * 4 2 1 7 7 H 1.08002 * 120.00198 * 0.02562 * 6 4 2 8 8 C 1.37877 * 119.99838 * 180.02562 * 6 4 2 9 9 N 1.31515 * 120.00101 * 359.97438 * 8 6 4 10 10 Si 1.86803 * 119.99764 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47507 * 89.99651 * 10 8 6 12 12 H 1.48504 * 109.46913 * 209.99606 * 10 8 6 13 13 H 1.48497 * 109.46943 * 329.99160 * 10 8 6 14 14 C 1.53199 * 109.29827 * 299.16544 * 4 2 1 15 15 C 1.53123 * 109.11285 * 302.36455 * 14 4 2 16 16 C 1.53038 * 109.30982 * 57.64056 * 15 14 4 17 17 N 1.46845 * 109.52295 * 300.79856 * 16 15 14 18 18 C 1.46908 * 110.99856 * 185.83759 * 17 16 15 19 19 C 1.50702 * 109.46715 * 183.62580 * 18 17 16 20 20 C 1.38244 * 119.99785 * 276.27066 * 19 18 17 21 21 C 1.38229 * 119.99713 * 179.81598 * 20 19 18 22 22 C 1.38232 * 120.00198 * 0.39367 * 21 20 19 23 23 C 1.38239 * 120.00223 * 359.86013 * 22 21 20 24 24 C 1.38227 * 120.00395 * 96.55024 * 19 18 17 25 25 H 1.08992 * 109.46753 * 303.60025 * 1 2 3 26 26 H 1.08996 * 109.47243 * 63.60400 * 1 2 3 27 27 H 1.09004 * 109.46697 * 183.60130 * 1 2 3 28 28 H 0.96997 * 119.99590 * 180.02562 * 9 8 6 29 29 H 1.08996 * 109.57658 * 182.46151 * 14 4 2 30 30 H 1.08994 * 109.51574 * 62.23874 * 14 4 2 31 31 H 1.08999 * 109.50765 * 297.67674 * 15 14 4 32 32 H 1.09000 * 109.50422 * 177.59486 * 15 14 4 33 33 H 1.09006 * 109.46422 * 60.81540 * 16 15 14 34 34 H 1.09000 * 109.46369 * 180.78159 * 16 15 14 35 35 H 1.08994 * 109.47319 * 303.62291 * 18 17 16 36 36 H 1.08997 * 109.46624 * 63.62960 * 18 17 16 37 37 H 1.07996 * 119.99813 * 359.97438 * 20 19 18 38 38 H 1.08001 * 120.00273 * 180.23517 * 21 20 19 39 39 H 1.08000 * 120.00384 * 179.83608 * 22 21 20 40 40 H 1.07996 * 120.00260 * 179.97438 * 23 22 21 41 41 H 1.08004 * 119.99628 * 359.97003 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7208 -1.2500 5 1 3.1298 -0.7084 -1.2581 6 6 1.5198 -0.0232 -2.4805 7 1 0.8888 0.8477 -2.3814 8 6 1.8495 -0.4967 -3.7327 9 7 2.6183 -1.5570 -3.8534 10 14 1.2054 0.3685 -5.2578 11 1 2.1680 1.4197 -5.6744 12 1 1.0442 -0.6183 -6.3558 13 1 -0.1082 0.9917 -4.9557 14 6 1.5443 -2.1703 -1.2363 15 6 2.0270 -2.8531 0.0464 16 6 1.5175 -2.0705 1.2589 17 7 2.0194 -0.6918 1.1993 18 6 1.6652 0.0504 2.4166 19 6 2.1176 1.4816 2.2816 20 6 3.4227 1.8251 2.5812 21 6 3.8386 3.1372 2.4538 22 6 2.9475 4.1072 2.0347 23 6 1.6410 3.7647 1.7402 24 6 1.2261 2.4519 1.8640 25 1 -0.3632 0.5687 0.8559 26 1 -0.3633 0.4569 -0.9205 27 1 -0.3633 -1.0257 0.0646 28 1 2.8505 -1.8898 -4.7343 29 1 1.9409 -2.7002 -2.1023 30 1 0.4549 -2.1829 -1.2678 31 1 3.1167 -2.8750 0.0592 32 1 1.6421 -3.8722 0.0833 33 1 0.4275 -2.0609 1.2530 34 1 1.8714 -2.5466 2.1733 35 1 0.5847 0.0227 2.5576 36 1 2.1557 -0.4062 3.2761 37 1 4.1179 1.0679 2.9122 38 1 4.8593 3.4049 2.6841 39 1 3.2717 5.1328 1.9377 40 1 0.9446 4.5226 1.4132 41 1 0.2053 2.1842 1.6338 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211467127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:23 Heat of formation + Delta-G solvation = 22.117358 kcal Electronic energy + Delta-G solvation = -20144.772923 eV Core-core repulsion = 17409.940427 eV Total energy + Delta-G solvation = -2734.832496 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.64228 -38.09448 -34.01298 -32.33165 -31.01057 -30.49211 -30.13701 -26.90680 -25.27440 -24.66313 -22.31118 -21.95144 -21.28423 -20.36411 -17.58648 -16.52425 -16.24119 -15.26229 -15.17394 -14.97442 -14.45453 -14.13939 -13.54875 -13.32104 -13.07101 -12.61199 -12.54601 -12.22321 -12.03985 -11.83355 -11.70910 -11.45553 -11.01144 -10.83543 -10.78730 -10.67871 -10.52554 -10.31592 -10.07668 -9.69880 -9.26599 -8.87233 -8.69813 -8.59576 -8.42800 -8.24880 -7.50602 -5.92529 -3.97262 1.59636 1.66943 3.33064 3.39807 3.42291 3.99181 4.46085 4.75245 5.05027 5.10190 5.22629 5.33194 5.37550 5.57208 5.72299 5.74024 5.82154 5.84332 5.92802 6.01374 6.13628 6.23871 6.26539 6.32334 6.33680 6.41434 6.68254 6.72180 6.74282 6.77037 6.84324 6.92221 7.00233 7.10252 7.25263 7.32491 7.46293 7.78906 7.81674 7.91020 8.15690 8.23547 8.54974 9.06075 9.66123 11.13649 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.018406 B = 0.007246 C = 0.005864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.837866 B = 3863.146675 C = 4774.090259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.088 3.912 3 H 0.072 0.928 4 C 0.063 3.937 5 H 0.031 0.969 6 C -0.507 4.507 7 H 0.055 0.945 8 C 0.062 3.938 9 N -0.889 5.889 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.276 1.276 14 C -0.111 4.111 15 C -0.117 4.117 16 C 0.059 3.941 17 N -0.527 5.527 18 C 0.090 3.910 19 C -0.068 4.068 20 C -0.099 4.099 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.122 4.122 24 C -0.111 4.111 25 H 0.029 0.971 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.258 0.742 29 H 0.088 0.912 30 H 0.033 0.967 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.029 0.971 34 H 0.055 0.945 35 H 0.035 0.965 36 H 0.073 0.927 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.414 4.811 12.590 13.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.019 4.019 3 H 0.090 0.910 4 C 0.044 3.956 5 H 0.049 0.951 6 C -0.546 4.546 7 H 0.073 0.927 8 C -0.139 4.139 9 N -0.528 5.528 10 Si 0.715 3.285 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.201 1.201 14 C -0.149 4.149 15 C -0.154 4.154 16 C -0.069 4.069 17 N -0.250 5.250 18 C -0.037 4.037 19 C -0.069 4.069 20 C -0.118 4.118 21 C -0.142 4.142 22 C -0.145 4.145 23 C -0.140 4.140 24 C -0.129 4.129 25 H 0.048 0.952 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.091 0.909 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.823 4.650 12.426 13.293 hybrid contribution -1.236 0.486 -0.941 1.627 sum -2.059 5.137 11.486 12.749 Atomic orbital electron populations 1.22441 0.99032 1.01000 1.00825 1.21882 0.91841 0.98108 0.90086 0.90963 1.18643 0.96493 0.91066 0.89407 0.95112 1.21175 1.30537 1.12335 0.90564 0.92732 1.24927 0.95162 0.95045 0.98760 1.69896 1.36609 1.23241 1.23068 0.86687 0.79260 0.79411 0.83174 1.20795 1.21357 1.20071 1.21689 0.98282 0.99183 0.95770 1.21665 1.00913 0.96924 0.95946 1.22053 0.97031 0.89265 0.98565 1.62365 1.59477 1.01642 1.01556 1.21032 0.97971 0.90329 0.94395 1.19766 0.94000 0.94904 0.98187 1.20988 0.95294 0.95951 0.99532 1.21087 0.99268 0.93349 1.00498 1.21065 0.93876 0.99154 1.00357 1.21065 0.96217 0.96266 1.00497 1.21149 0.99779 0.92906 0.99103 0.95247 0.91183 0.92899 0.93180 0.89328 0.94852 0.92220 0.93667 0.95253 0.92656 0.94660 0.90900 0.86107 0.86466 0.86619 0.86478 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.38 7.75 37.16 0.29 -3.09 16 2 C 0.09 1.85 1.92 -67.72 -0.13 1.72 16 3 H 0.07 1.61 5.88 -51.93 -0.31 1.31 16 4 C 0.06 1.56 2.04 -91.64 -0.19 1.38 16 5 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 6 C -0.51 -13.78 7.79 -34.44 -0.27 -14.05 16 7 H 0.05 1.47 6.66 -52.49 -0.35 1.12 16 8 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 9 N -0.89 -25.49 11.36 55.43 0.63 -24.86 16 10 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 C -0.11 -2.62 4.72 -26.56 -0.13 -2.75 16 15 C -0.12 -2.29 6.09 -26.65 -0.16 -2.45 16 16 C 0.06 1.03 5.17 -3.83 -0.02 1.01 16 17 N -0.53 -9.74 4.70 -228.12 -1.07 -10.81 16 18 C 0.09 1.40 4.80 -4.97 -0.02 1.37 16 19 C -0.07 -1.06 4.13 -104.62 -0.43 -1.49 16 20 C -0.10 -1.45 9.73 -39.58 -0.39 -1.84 16 21 C -0.12 -1.66 10.05 -39.59 -0.40 -2.06 16 22 C -0.13 -1.65 10.05 -39.58 -0.40 -2.05 16 23 C -0.12 -1.69 10.05 -39.58 -0.40 -2.08 16 24 C -0.11 -1.67 7.98 -39.59 -0.32 -1.98 16 25 H 0.03 0.49 4.87 -51.93 -0.25 0.24 16 26 H 0.07 1.46 6.45 -51.93 -0.34 1.13 16 27 H 0.05 1.03 4.80 -51.93 -0.25 0.78 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.09 2.35 6.17 -51.93 -0.32 2.03 16 30 H 0.03 0.78 6.64 -51.93 -0.34 0.44 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.03 0.51 6.11 -51.93 -0.32 0.19 16 34 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 35 H 0.04 0.53 6.83 -51.93 -0.35 0.18 16 36 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 37 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 38 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 41 H 0.12 1.73 6.23 -52.48 -0.33 1.41 16 LS Contribution 306.36 15.07 4.62 4.62 Total: -1.00 -28.44 306.36 -9.99 -38.43 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -6.10 Total: 2.96 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: -3.05 Total: -26.74 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.44 Total: -35.67 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.44 -9.99 -38.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211467127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.551 kcal (2) G-P(sol) polarization free energy of solvation -28.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds