Wall clock time and date at job start Mon Mar 30 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.45326 * 2 1 4 4 C 1.53043 * 109.46305 * 240.03110 * 2 1 3 5 5 H 1.08994 * 109.50365 * 179.17670 * 4 2 1 6 6 C 1.50703 * 109.50189 * 59.10375 * 4 2 1 7 7 H 1.08002 * 120.00198 * 0.02562 * 6 4 2 8 8 C 1.37877 * 119.99838 * 180.02562 * 6 4 2 9 9 N 1.31515 * 120.00101 * 359.97438 * 8 6 4 10 10 Si 1.86803 * 119.99764 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47507 * 89.99651 * 10 8 6 12 12 H 1.48504 * 109.46913 * 209.99606 * 10 8 6 13 13 H 1.48497 * 109.46943 * 329.99160 * 10 8 6 14 14 C 1.53199 * 109.29827 * 299.16544 * 4 2 1 15 15 C 1.53123 * 109.11285 * 302.36455 * 14 4 2 16 16 C 1.53038 * 109.30982 * 57.64056 * 15 14 4 17 17 N 1.46845 * 109.52295 * 300.79856 * 16 15 14 18 18 C 1.46908 * 110.99856 * 185.83759 * 17 16 15 19 19 C 1.50702 * 109.46715 * 183.62580 * 18 17 16 20 20 C 1.38244 * 119.99785 * 276.27066 * 19 18 17 21 21 C 1.38229 * 119.99713 * 179.81598 * 20 19 18 22 22 C 1.38232 * 120.00198 * 0.39367 * 21 20 19 23 23 C 1.38239 * 120.00223 * 359.86013 * 22 21 20 24 24 C 1.38227 * 120.00395 * 96.55024 * 19 18 17 25 25 H 1.08992 * 109.46753 * 303.60025 * 1 2 3 26 26 H 1.08996 * 109.47243 * 63.60400 * 1 2 3 27 27 H 1.09004 * 109.46697 * 183.60130 * 1 2 3 28 28 H 0.96997 * 119.99590 * 180.02562 * 9 8 6 29 29 H 1.08996 * 109.57658 * 182.46151 * 14 4 2 30 30 H 1.08994 * 109.51574 * 62.23874 * 14 4 2 31 31 H 1.08999 * 109.50765 * 297.67674 * 15 14 4 32 32 H 1.09000 * 109.50422 * 177.59486 * 15 14 4 33 33 H 1.09006 * 109.46422 * 60.81540 * 16 15 14 34 34 H 1.09000 * 109.46369 * 180.78159 * 16 15 14 35 35 H 1.08994 * 109.47319 * 303.62291 * 18 17 16 36 36 H 1.08997 * 109.46624 * 63.62960 * 18 17 16 37 37 H 1.07996 * 119.99813 * 359.97438 * 20 19 18 38 38 H 1.08001 * 120.00273 * 180.23517 * 21 20 19 39 39 H 1.08000 * 120.00384 * 179.83608 * 22 21 20 40 40 H 1.07996 * 120.00260 * 179.97438 * 23 22 21 41 41 H 1.08004 * 119.99628 * 359.97003 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7208 -1.2500 5 1 3.1298 -0.7084 -1.2581 6 6 1.5198 -0.0232 -2.4805 7 1 0.8888 0.8477 -2.3814 8 6 1.8495 -0.4967 -3.7327 9 7 2.6183 -1.5570 -3.8534 10 14 1.2054 0.3685 -5.2578 11 1 2.1680 1.4197 -5.6744 12 1 1.0442 -0.6183 -6.3558 13 1 -0.1082 0.9917 -4.9557 14 6 1.5443 -2.1703 -1.2363 15 6 2.0270 -2.8531 0.0464 16 6 1.5175 -2.0705 1.2589 17 7 2.0194 -0.6918 1.1993 18 6 1.6652 0.0504 2.4166 19 6 2.1176 1.4816 2.2816 20 6 3.4227 1.8251 2.5812 21 6 3.8386 3.1372 2.4538 22 6 2.9475 4.1072 2.0347 23 6 1.6410 3.7647 1.7402 24 6 1.2261 2.4519 1.8640 25 1 -0.3632 0.5687 0.8559 26 1 -0.3633 0.4569 -0.9205 27 1 -0.3633 -1.0257 0.0646 28 1 2.8505 -1.8898 -4.7343 29 1 1.9409 -2.7002 -2.1023 30 1 0.4549 -2.1829 -1.2678 31 1 3.1167 -2.8750 0.0592 32 1 1.6421 -3.8722 0.0833 33 1 0.4275 -2.0609 1.2530 34 1 1.8714 -2.5466 2.1733 35 1 0.5847 0.0227 2.5576 36 1 2.1557 -0.4062 3.2761 37 1 4.1179 1.0679 2.9122 38 1 4.8593 3.4049 2.6841 39 1 3.2717 5.1328 1.9377 40 1 0.9446 4.5226 1.4132 41 1 0.2053 2.1842 1.6338 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211467127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:23 Heat of formation + Delta-G solvation = 6.880971 kcal Electronic energy + Delta-G solvation = -20145.433622 eV Core-core repulsion = 17409.940427 eV Total energy + Delta-G solvation = -2735.493195 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.98576 -39.41726 -35.73330 -33.99701 -32.62323 -31.66850 -31.52700 -28.58908 -26.78942 -26.40114 -23.46727 -23.37817 -22.98316 -21.66385 -19.26269 -18.29206 -17.54191 -16.97912 -16.61649 -16.16667 -15.98673 -15.61806 -15.12624 -14.66937 -14.33603 -14.23000 -14.06962 -13.78769 -13.35354 -13.24528 -13.14538 -13.03162 -12.85394 -12.55396 -12.41997 -12.27023 -11.84302 -11.82017 -11.71843 -11.46911 -11.12870 -10.68598 -10.54723 -10.33383 -9.70853 -9.57987 -8.93896 -8.04413 -6.16328 0.51765 0.59923 1.39961 1.40848 1.50241 2.43896 2.87611 3.22719 3.38193 3.90829 4.01567 4.21176 4.23111 4.26710 4.32687 4.37074 4.51989 4.57155 4.63578 4.69509 4.74252 4.76858 4.85879 4.87979 5.03735 5.10574 5.19228 5.22260 5.25550 5.32727 5.37283 5.52030 5.58626 5.65203 5.68589 5.69554 5.81088 6.04040 6.20242 6.22131 6.29657 6.44792 6.55292 6.96273 7.50357 9.00424 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.018406 B = 0.007246 C = 0.005864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.837866 B = 3863.146675 C = 4774.090259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.103 3.897 3 H 0.056 0.944 4 C 0.062 3.938 5 H -0.016 1.016 6 C -0.521 4.521 7 H 0.052 0.948 8 C 0.012 3.988 9 N -0.917 5.917 10 Si 0.947 3.053 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.268 1.268 14 C -0.103 4.103 15 C -0.111 4.111 16 C 0.062 3.938 17 N -0.539 5.539 18 C 0.094 3.906 19 C -0.087 4.087 20 C -0.114 4.114 21 C -0.130 4.130 22 C -0.130 4.130 23 C -0.132 4.132 24 C -0.126 4.126 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.258 0.742 29 H 0.052 0.948 30 H 0.030 0.970 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.037 0.963 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.093 0.907 37 H 0.127 0.873 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.133 5.657 13.949 15.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.005 4.005 3 H 0.074 0.926 4 C 0.043 3.957 5 H 0.002 0.998 6 C -0.560 4.560 7 H 0.071 0.929 8 C -0.186 4.186 9 N -0.557 5.557 10 Si 0.773 3.227 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.192 1.192 14 C -0.141 4.141 15 C -0.149 4.149 16 C -0.066 4.066 17 N -0.263 5.263 18 C -0.033 4.033 19 C -0.087 4.087 20 C -0.133 4.133 21 C -0.148 4.148 22 C -0.148 4.148 23 C -0.150 4.150 24 C -0.145 4.145 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.111 0.889 37 H 0.145 0.855 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.153 0.847 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.548 5.501 13.802 14.938 hybrid contribution -0.952 0.259 -1.341 1.665 sum -2.500 5.761 12.461 13.953 Atomic orbital electron populations 1.22303 0.97674 1.01234 1.01004 1.21464 0.92632 0.96756 0.89602 0.92561 1.18548 0.93549 0.92509 0.91077 0.99811 1.21516 1.30307 1.12332 0.91812 0.92936 1.25686 0.95509 0.95739 1.01679 1.70049 1.37683 1.24470 1.23531 0.85725 0.78922 0.78363 0.79672 1.20500 1.21024 1.19203 1.21479 0.97692 0.98302 0.96676 1.21583 1.00077 0.98257 0.94979 1.22063 0.97409 0.88535 0.98551 1.62259 1.59998 1.02272 1.01801 1.21086 0.98704 0.90241 0.93260 1.19879 0.94603 0.95019 0.99237 1.21203 0.95273 0.96882 0.99904 1.21427 1.00527 0.92982 0.99869 1.21434 0.93556 1.00459 0.99340 1.21381 0.97093 0.96328 1.00206 1.21283 0.99900 0.93615 0.99687 0.92485 0.93179 0.92881 0.93307 0.92933 0.95157 0.93594 0.91323 0.94517 0.89463 0.93823 0.88904 0.85538 0.84232 0.84069 0.84660 0.86242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.18 7.75 71.98 0.56 -5.62 16 2 C 0.10 4.33 1.92 44.94 0.09 4.41 16 3 H 0.06 2.53 5.88 -2.39 -0.01 2.52 16 4 C 0.06 3.19 2.04 -11.46 -0.02 3.16 16 5 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 6 C -0.52 -29.01 7.79 25.60 0.20 -28.81 16 7 H 0.05 2.88 6.66 -2.91 -0.02 2.86 16 8 C 0.01 0.68 5.30 84.65 0.45 1.13 16 9 N -0.92 -54.27 11.36 21.45 0.24 -54.03 16 10 Si 0.95 44.46 29.54 68.60 2.03 46.49 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 14 C -0.10 -4.97 4.72 30.70 0.15 -4.83 16 15 C -0.11 -4.29 6.09 30.65 0.19 -4.10 16 16 C 0.06 2.03 5.17 86.33 0.45 2.47 16 17 N -0.54 -19.26 4.70 -875.63 -4.12 -23.38 16 18 C 0.09 2.70 4.80 85.56 0.41 3.11 16 19 C -0.09 -2.58 4.13 -19.87 -0.08 -2.66 16 20 C -0.11 -3.19 9.73 22.27 0.22 -2.97 16 21 C -0.13 -3.24 10.05 22.27 0.22 -3.02 16 22 C -0.13 -3.12 10.05 22.27 0.22 -2.90 16 23 C -0.13 -3.42 10.05 22.27 0.22 -3.19 16 24 C -0.13 -3.63 7.98 22.27 0.18 -3.46 16 25 H 0.06 1.82 4.87 -2.39 -0.01 1.80 16 26 H 0.05 2.07 6.45 -2.39 -0.02 2.06 16 27 H 0.05 1.98 4.80 -2.39 -0.01 1.97 16 28 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.05 2.90 6.17 -2.39 -0.01 2.88 16 30 H 0.03 1.43 6.64 -2.39 -0.02 1.42 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.04 1.17 6.11 -2.38 -0.01 1.16 16 34 H 0.09 2.36 8.12 -2.39 -0.02 2.34 16 35 H 0.04 1.19 6.83 -2.39 -0.02 1.17 16 36 H 0.09 2.30 8.12 -2.39 -0.02 2.28 16 37 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 38 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 39 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 40 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 41 H 0.12 3.30 6.23 -2.91 -0.02 3.29 16 Total: -1.00 -62.73 306.36 2.60 -60.13 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 1.01 Total: 18.05 kcal Atomic # 6 Polarization: -50.70 SS G_CDS: 3.44 Total: -47.26 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -3.87 Total: -77.41 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -62.73 2.60 -60.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211467127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.009 kcal (2) G-P(sol) polarization free energy of solvation -62.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds