Wall clock time and date at job start Mon Mar 30 2020 06:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46007 * 2 1 4 4 C 1.53037 * 109.45849 * 119.97558 * 2 1 3 5 5 H 1.08997 * 109.53826 * 59.23650 * 4 2 1 6 6 C 1.50697 * 109.50543 * 299.13612 * 4 2 1 7 7 H 1.07996 * 120.00011 * 0.19290 * 6 4 2 8 8 C 1.37875 * 119.99963 * 180.20329 * 6 4 2 9 9 N 1.31516 * 120.00016 * 180.02562 * 8 6 4 10 10 Si 1.86803 * 120.00158 * 359.97438 * 8 6 4 11 11 H 1.48504 * 109.46963 * 90.00428 * 10 8 6 12 12 H 1.48499 * 109.47242 * 210.00222 * 10 8 6 13 13 H 1.48500 * 109.47019 * 330.00328 * 10 8 6 14 14 C 1.53123 * 109.27398 * 179.19476 * 4 2 1 15 15 C 1.53120 * 109.21163 * 302.31409 * 14 4 2 16 16 C 1.53166 * 109.20873 * 57.62805 * 15 14 4 17 17 N 1.46845 * 109.55463 * 300.85535 * 16 15 14 18 18 C 1.46900 * 111.00045 * 185.84196 * 17 16 15 19 19 C 1.50693 * 109.47321 * 45.79054 * 18 17 16 20 20 C 1.38237 * 120.00188 * 269.73008 * 19 18 17 21 21 C 1.38234 * 120.00098 * 179.79064 * 20 19 18 22 22 C 1.38237 * 119.99999 * 0.45599 * 21 20 19 23 23 C 1.38235 * 119.99683 * 359.77349 * 22 21 20 24 24 C 1.38234 * 119.99949 * 90.00415 * 19 18 17 25 25 H 1.08999 * 109.47199 * 300.02219 * 1 2 3 26 26 H 1.09000 * 109.46900 * 60.02553 * 1 2 3 27 27 H 1.09007 * 109.46966 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00135 * 180.02562 * 9 8 6 29 29 H 1.09002 * 109.52319 * 62.25202 * 14 4 2 30 30 H 1.08995 * 109.52318 * 182.37884 * 14 4 2 31 31 H 1.09004 * 109.49930 * 177.63007 * 15 14 4 32 32 H 1.08997 * 109.50353 * 297.74224 * 15 14 4 33 33 H 1.09003 * 109.44926 * 180.83262 * 16 15 14 34 34 H 1.09002 * 109.44150 * 60.87652 * 16 15 14 35 35 H 1.09002 * 109.47245 * 165.79508 * 18 17 16 36 36 H 1.09007 * 109.47066 * 285.78934 * 18 17 16 37 37 H 1.07995 * 120.00113 * 359.97438 * 20 19 18 38 38 H 1.07999 * 120.00137 * 180.25803 * 21 20 19 39 39 H 1.07996 * 120.00020 * 179.79704 * 22 21 20 40 40 H 1.08006 * 119.99577 * 179.97438 * 23 22 21 41 41 H 1.07999 * 120.00346 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 1.2499 5 1 1.6659 -1.7447 1.2583 6 6 1.5554 0.0017 2.4804 7 1 0.9421 0.8851 2.3814 8 6 1.8952 -0.4649 3.7325 9 7 1.4719 0.1654 4.8064 10 14 2.9555 -1.9933 3.9037 11 1 4.3876 -1.6013 3.9338 12 1 2.6087 -2.6978 5.1641 13 1 2.7134 -2.8956 2.7495 14 6 3.5709 -0.7361 1.2356 15 6 4.0560 -1.4193 -0.0460 16 6 3.4865 -0.6776 -1.2591 17 7 2.0193 -0.6917 -1.1994 18 6 1.4373 -0.1105 -2.4165 19 6 2.1390 -0.6717 -3.6263 20 6 3.2526 -0.0323 -4.1380 21 6 3.8988 -0.5495 -5.2452 22 6 3.4258 -1.7009 -5.8464 23 6 2.3093 -2.3377 -5.3375 24 6 1.6656 -1.8228 -4.2278 25 1 -0.3633 0.5142 0.8898 26 1 -0.3633 0.5134 -0.8902 27 1 -0.3633 -1.0277 0.0005 28 1 1.7113 -0.1626 5.6873 29 1 3.9457 0.2870 1.2672 30 1 3.9379 -1.2854 2.1025 31 1 5.1452 -1.3953 -0.0813 32 1 3.7138 -2.4541 -0.0587 33 1 3.8174 -1.1698 -2.1736 34 1 3.8403 0.3533 -1.2530 35 1 0.3765 -0.3563 -2.4652 36 1 1.5587 0.9726 -2.3959 37 1 3.6196 0.8697 -3.6711 38 1 4.7713 -0.0522 -5.6425 39 1 3.9287 -2.1031 -6.7133 40 1 1.9395 -3.2370 -5.8075 41 1 0.7932 -2.3202 -3.8305 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211467197.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:26 Heat of formation + Delta-G solvation = 25.180305 kcal Electronic energy + Delta-G solvation = -19832.404455 eV Core-core repulsion = 17097.704779 eV Total energy + Delta-G solvation = -2734.699677 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.75690 -38.22165 -34.25237 -32.49267 -31.82664 -30.90565 -30.33561 -27.04005 -25.79371 -24.48149 -22.59693 -22.10887 -20.65730 -20.42912 -18.76539 -16.85238 -16.66072 -15.48773 -15.32190 -15.17121 -14.36198 -14.30123 -13.60161 -13.58115 -13.40784 -13.19231 -12.71755 -12.58838 -12.30671 -11.98681 -11.72003 -11.45113 -11.22589 -11.07924 -10.97371 -10.89149 -10.64312 -10.43100 -9.99673 -9.78453 -9.68953 -9.04787 -8.89723 -8.82251 -8.71102 -8.47764 -7.72758 -6.04017 -4.02335 1.33886 1.40803 3.30719 3.42103 3.45691 3.74632 4.45251 4.52215 4.82575 4.87160 4.98237 5.10942 5.27309 5.39415 5.49496 5.50904 5.59118 5.72877 5.74400 5.85224 5.92571 6.02386 6.04748 6.09930 6.20361 6.24430 6.40038 6.42741 6.45876 6.49158 6.61003 6.68716 6.69381 6.87680 6.88413 6.99699 7.04698 7.20577 7.47271 7.65478 7.70723 7.92639 8.55605 8.99223 9.59214 11.08986 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034935 B = 0.005362 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.292734 B = 5220.193442 C = 5555.482038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.101 3.899 3 H 0.033 0.967 4 C 0.026 3.974 5 H 0.035 0.965 6 C -0.509 4.509 7 H 0.075 0.925 8 C 0.071 3.929 9 N -0.903 5.903 10 Si 0.885 3.115 11 H -0.281 1.281 12 H -0.299 1.299 13 H -0.264 1.264 14 C -0.123 4.123 15 C -0.119 4.119 16 C 0.060 3.940 17 N -0.530 5.530 18 C 0.090 3.910 19 C -0.072 4.072 20 C -0.115 4.115 21 C -0.123 4.123 22 C -0.127 4.127 23 C -0.123 4.123 24 C -0.101 4.101 25 H 0.073 0.927 26 H 0.034 0.966 27 H 0.054 0.946 28 H 0.263 0.737 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.025 0.975 35 H 0.084 0.916 36 H 0.037 0.963 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.198 -2.700 -18.938 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.006 4.006 3 H 0.051 0.949 4 C 0.007 3.993 5 H 0.053 0.947 6 C -0.547 4.547 7 H 0.093 0.907 8 C -0.131 4.131 9 N -0.542 5.542 10 Si 0.716 3.284 11 H -0.208 1.208 12 H -0.227 1.227 13 H -0.189 1.189 14 C -0.161 4.161 15 C -0.157 4.157 16 C -0.068 4.068 17 N -0.255 5.255 18 C -0.037 4.037 19 C -0.072 4.072 20 C -0.133 4.133 21 C -0.141 4.141 22 C -0.146 4.146 23 C -0.141 4.141 24 C -0.119 4.119 25 H 0.092 0.908 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.043 0.957 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.028 -3.170 -18.694 19.201 hybrid contribution 1.024 0.062 0.237 1.053 sum 4.053 -3.108 -18.457 19.150 Atomic orbital electron populations 1.21814 0.94907 1.01772 1.00764 1.21605 0.95001 0.94978 0.89008 0.94937 1.19182 0.90577 0.97036 0.92482 0.94669 1.21026 1.32272 1.12859 0.88585 0.90696 1.24969 0.95688 0.96556 0.95853 1.69896 1.46057 1.40305 0.97901 0.86867 0.80470 0.84203 0.76841 1.20813 1.22701 1.18851 1.22040 0.99795 0.99418 0.94847 1.21677 0.98396 1.00173 0.95474 1.22117 0.87877 0.98237 0.98565 1.62181 1.06843 1.55224 1.01291 1.21131 0.98935 0.96219 0.87451 1.19927 0.95628 0.95502 0.96149 1.21112 0.95623 1.00151 0.96455 1.21080 0.99951 0.96701 0.96407 1.21094 0.97078 0.96203 1.00198 1.21137 0.96219 0.99893 0.96834 1.21065 1.00179 0.95390 0.95303 0.90838 0.94718 0.92642 0.92756 0.92643 0.93578 0.92946 0.91933 0.91197 0.95721 0.89793 0.94458 0.86419 0.86385 0.86499 0.86312 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.54 37.16 0.32 -2.20 16 2 C 0.10 2.03 1.88 -67.72 -0.13 1.90 16 3 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 4 C 0.03 0.62 1.38 -91.69 -0.13 0.49 16 5 H 0.04 0.88 7.21 -51.93 -0.37 0.51 16 6 C -0.51 -14.00 8.42 -34.44 -0.29 -14.29 16 7 H 0.08 2.21 7.01 -52.49 -0.37 1.84 16 8 C 0.07 2.02 5.45 -17.82 -0.10 1.93 16 9 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 10 Si 0.89 22.25 24.35 -169.99 -4.14 18.11 16 11 H -0.28 -6.91 6.89 56.52 0.39 -6.52 16 12 H -0.30 -7.56 7.11 56.52 0.40 -7.15 16 13 H -0.26 -6.42 6.53 56.52 0.37 -6.06 16 14 C -0.12 -2.71 4.73 -26.61 -0.13 -2.84 16 15 C -0.12 -2.19 6.11 -26.58 -0.16 -2.35 16 16 C 0.06 1.01 4.58 -3.77 -0.02 0.99 16 17 N -0.53 -9.26 4.64 -228.04 -1.06 -10.32 16 18 C 0.09 1.31 4.52 -4.98 -0.02 1.29 16 19 C -0.07 -0.95 4.11 -104.63 -0.43 -1.38 16 20 C -0.11 -1.40 7.82 -39.58 -0.31 -1.71 16 21 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 22 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16 23 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 24 C -0.10 -1.24 9.70 -39.58 -0.38 -1.62 16 25 H 0.07 1.50 6.67 -51.93 -0.35 1.16 16 26 H 0.03 0.54 6.55 -51.93 -0.34 0.20 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.05 1.07 3.34 -51.93 -0.17 0.90 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.09 5.65 -51.93 -0.29 0.80 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 1.17 6.79 -51.93 -0.35 0.82 16 36 H 0.04 0.54 8.02 -51.93 -0.42 0.12 16 37 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 38 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 41 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 309.54 15.07 4.66 4.66 Total: -1.00 -29.71 309.54 -9.22 -38.93 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.50 Total: 0.35 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: -2.97 Total: -24.96 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: -0.28 Total: -37.09 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.14 Total: 18.11 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.71 -9.22 -38.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211467197.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.111 kcal (2) G-P(sol) polarization free energy of solvation -29.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds