Wall clock time and date at job start Mon Mar 30 2020 06:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46007 * 2 1 4 4 C 1.53037 * 109.45849 * 119.97558 * 2 1 3 5 5 H 1.08997 * 109.53826 * 59.23650 * 4 2 1 6 6 C 1.50697 * 109.50543 * 299.13612 * 4 2 1 7 7 H 1.07996 * 120.00011 * 0.19290 * 6 4 2 8 8 C 1.37875 * 119.99963 * 180.20329 * 6 4 2 9 9 N 1.31516 * 120.00016 * 180.02562 * 8 6 4 10 10 Si 1.86803 * 120.00158 * 359.97438 * 8 6 4 11 11 H 1.48504 * 109.46963 * 90.00428 * 10 8 6 12 12 H 1.48499 * 109.47242 * 210.00222 * 10 8 6 13 13 H 1.48500 * 109.47019 * 330.00328 * 10 8 6 14 14 C 1.53123 * 109.27398 * 179.19476 * 4 2 1 15 15 C 1.53120 * 109.21163 * 302.31409 * 14 4 2 16 16 C 1.53166 * 109.20873 * 57.62805 * 15 14 4 17 17 N 1.46845 * 109.55463 * 300.85535 * 16 15 14 18 18 C 1.46900 * 111.00045 * 185.84196 * 17 16 15 19 19 C 1.50693 * 109.47321 * 45.79054 * 18 17 16 20 20 C 1.38237 * 120.00188 * 269.73008 * 19 18 17 21 21 C 1.38234 * 120.00098 * 179.79064 * 20 19 18 22 22 C 1.38237 * 119.99999 * 0.45599 * 21 20 19 23 23 C 1.38235 * 119.99683 * 359.77349 * 22 21 20 24 24 C 1.38234 * 119.99949 * 90.00415 * 19 18 17 25 25 H 1.08999 * 109.47199 * 300.02219 * 1 2 3 26 26 H 1.09000 * 109.46900 * 60.02553 * 1 2 3 27 27 H 1.09007 * 109.46966 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00135 * 180.02562 * 9 8 6 29 29 H 1.09002 * 109.52319 * 62.25202 * 14 4 2 30 30 H 1.08995 * 109.52318 * 182.37884 * 14 4 2 31 31 H 1.09004 * 109.49930 * 177.63007 * 15 14 4 32 32 H 1.08997 * 109.50353 * 297.74224 * 15 14 4 33 33 H 1.09003 * 109.44926 * 180.83262 * 16 15 14 34 34 H 1.09002 * 109.44150 * 60.87652 * 16 15 14 35 35 H 1.09002 * 109.47245 * 165.79508 * 18 17 16 36 36 H 1.09007 * 109.47066 * 285.78934 * 18 17 16 37 37 H 1.07995 * 120.00113 * 359.97438 * 20 19 18 38 38 H 1.07999 * 120.00137 * 180.25803 * 21 20 19 39 39 H 1.07996 * 120.00020 * 179.79704 * 22 21 20 40 40 H 1.08006 * 119.99577 * 179.97438 * 23 22 21 41 41 H 1.07999 * 120.00346 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 1.2499 5 1 1.6659 -1.7447 1.2583 6 6 1.5554 0.0017 2.4804 7 1 0.9421 0.8851 2.3814 8 6 1.8952 -0.4649 3.7325 9 7 1.4719 0.1654 4.8064 10 14 2.9555 -1.9933 3.9037 11 1 4.3876 -1.6013 3.9338 12 1 2.6087 -2.6978 5.1641 13 1 2.7134 -2.8956 2.7495 14 6 3.5709 -0.7361 1.2356 15 6 4.0560 -1.4193 -0.0460 16 6 3.4865 -0.6776 -1.2591 17 7 2.0193 -0.6917 -1.1994 18 6 1.4373 -0.1105 -2.4165 19 6 2.1390 -0.6717 -3.6263 20 6 3.2526 -0.0323 -4.1380 21 6 3.8988 -0.5495 -5.2452 22 6 3.4258 -1.7009 -5.8464 23 6 2.3093 -2.3377 -5.3375 24 6 1.6656 -1.8228 -4.2278 25 1 -0.3633 0.5142 0.8898 26 1 -0.3633 0.5134 -0.8902 27 1 -0.3633 -1.0277 0.0005 28 1 1.7113 -0.1626 5.6873 29 1 3.9457 0.2870 1.2672 30 1 3.9379 -1.2854 2.1025 31 1 5.1452 -1.3953 -0.0813 32 1 3.7138 -2.4541 -0.0587 33 1 3.8174 -1.1698 -2.1736 34 1 3.8403 0.3533 -1.2530 35 1 0.3765 -0.3563 -2.4652 36 1 1.5587 0.9726 -2.3959 37 1 3.6196 0.8697 -3.6711 38 1 4.7713 -0.0522 -5.6425 39 1 3.9287 -2.1031 -6.7133 40 1 1.9395 -3.2370 -5.8075 41 1 0.7932 -2.3202 -3.8305 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211467197.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:26 Heat of formation + Delta-G solvation = 7.673666 kcal Electronic energy + Delta-G solvation = -19833.163600 eV Core-core repulsion = 17097.704779 eV Total energy + Delta-G solvation = -2735.458821 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.91179 -39.46575 -35.83797 -34.24514 -33.43711 -31.79818 -31.62602 -28.62666 -27.14849 -26.21593 -23.65265 -23.33142 -22.19286 -21.62715 -20.40378 -18.89066 -17.57747 -17.05086 -16.49865 -16.20588 -15.98806 -15.57884 -15.21724 -15.10871 -14.84372 -14.34487 -14.18607 -13.80938 -13.49930 -13.46302 -13.08550 -13.02442 -12.80189 -12.63804 -12.56433 -12.23017 -11.87520 -11.78482 -11.71172 -11.60130 -11.44309 -10.90977 -10.74190 -10.56128 -9.73589 -9.64323 -9.09822 -8.27428 -6.29002 0.47106 0.57012 1.29331 1.35917 1.46488 2.33838 2.80650 3.08198 3.25038 3.82568 3.95354 4.03713 4.11963 4.18889 4.23057 4.30812 4.36684 4.44666 4.55276 4.58759 4.67056 4.73935 4.75301 4.82128 4.86326 4.95524 5.05590 5.10146 5.16021 5.19840 5.22075 5.25660 5.36345 5.48656 5.61606 5.66283 5.68210 5.75571 5.79147 6.16179 6.21550 6.30430 6.40634 6.77607 7.35774 8.89024 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034935 B = 0.005362 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.292734 B = 5220.193442 C = 5555.482038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.108 3.892 3 H 0.018 0.982 4 C 0.027 3.973 5 H 0.023 0.977 6 C -0.506 4.506 7 H 0.040 0.960 8 C 0.015 3.985 9 N -0.950 5.950 10 Si 0.945 3.055 11 H -0.270 1.270 12 H -0.301 1.301 13 H -0.251 1.251 14 C -0.124 4.124 15 C -0.114 4.114 16 C 0.064 3.936 17 N -0.534 5.534 18 C 0.093 3.907 19 C -0.089 4.089 20 C -0.125 4.125 21 C -0.126 4.126 22 C -0.126 4.126 23 C -0.126 4.126 24 C -0.113 4.113 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.264 0.736 29 H 0.047 0.953 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.026 0.974 35 H 0.088 0.912 36 H 0.036 0.964 37 H 0.119 0.881 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.741 -4.182 -21.888 22.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.000 4.000 3 H 0.036 0.964 4 C 0.007 3.993 5 H 0.041 0.959 6 C -0.545 4.545 7 H 0.059 0.941 8 C -0.182 4.182 9 N -0.591 5.591 10 Si 0.773 3.227 11 H -0.196 1.196 12 H -0.229 1.229 13 H -0.175 1.175 14 C -0.162 4.162 15 C -0.152 4.152 16 C -0.063 4.063 17 N -0.259 5.259 18 C -0.034 4.034 19 C -0.089 4.089 20 C -0.144 4.144 21 C -0.144 4.144 22 C -0.144 4.144 23 C -0.144 4.144 24 C -0.132 4.132 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.044 0.956 35 H 0.106 0.894 36 H 0.055 0.945 37 H 0.137 0.863 38 H 0.157 0.843 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.574 -4.652 -21.676 22.637 hybrid contribution 0.495 0.585 1.060 1.308 sum 5.069 -4.067 -20.616 21.616 Atomic orbital electron populations 1.21715 0.94207 1.01752 1.00889 1.21351 0.95603 0.93850 0.89177 0.96404 1.19094 0.91998 0.95861 0.92313 0.95931 1.21315 1.30966 1.11720 0.90490 0.94146 1.25756 0.97226 0.99660 0.95561 1.70036 1.48169 1.42408 0.98506 0.85899 0.79194 0.80707 0.76930 1.19621 1.22871 1.17498 1.21952 0.98231 0.99370 0.96607 1.21654 1.00107 0.99589 0.93859 1.22114 0.87320 0.98327 0.98569 1.62108 1.07501 1.55015 1.01294 1.21123 0.99253 0.96156 0.86855 1.19816 0.96531 0.96467 0.96096 1.21216 0.95603 1.00355 0.97210 1.21378 1.00386 0.96861 0.95756 1.21468 0.96649 0.95690 1.00590 1.21430 0.96177 1.00544 0.96246 1.21201 1.00593 0.95336 0.96049 0.93584 0.91701 0.92648 0.92719 0.93384 0.94784 0.90287 0.92132 0.89331 0.95587 0.89389 0.94531 0.86344 0.84253 0.83879 0.84210 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 8.54 71.98 0.61 -4.20 16 2 C 0.11 4.33 1.88 44.94 0.08 4.41 16 3 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 4 C 0.03 1.25 1.38 -11.49 -0.02 1.24 16 5 H 0.02 1.12 7.21 -2.39 -0.02 1.11 16 6 C -0.51 -28.81 8.42 25.60 0.22 -28.59 16 7 H 0.04 2.52 7.01 -2.91 -0.02 2.50 16 8 C 0.01 0.86 5.45 84.65 0.46 1.32 16 9 N -0.95 -59.94 13.96 21.45 0.30 -59.64 16 10 Si 0.94 46.29 24.35 68.60 1.67 47.96 16 11 H -0.27 -12.65 6.89 99.48 0.69 -11.96 16 12 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 13 H -0.25 -11.65 6.53 99.48 0.65 -11.00 16 14 C -0.12 -5.33 4.73 30.68 0.15 -5.18 16 15 C -0.11 -3.91 6.11 30.69 0.19 -3.72 16 16 C 0.06 2.01 4.58 86.37 0.40 2.41 16 17 N -0.53 -17.88 4.64 -875.38 -4.06 -21.94 16 18 C 0.09 2.56 4.52 85.55 0.39 2.95 16 19 C -0.09 -2.15 4.11 -19.87 -0.08 -2.23 16 20 C -0.13 -2.73 7.82 22.27 0.17 -2.56 16 21 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 22 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 23 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 24 C -0.11 -2.51 9.70 22.27 0.22 -2.29 16 25 H 0.05 1.96 6.67 -2.39 -0.02 1.94 16 26 H 0.06 2.00 6.55 -2.39 -0.02 1.99 16 27 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.26 15.68 8.31 -92.71 -0.77 14.90 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.03 1.53 3.34 -2.39 -0.01 1.52 16 31 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.09 2.50 5.65 -2.39 -0.01 2.48 16 34 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.09 2.32 6.79 -2.39 -0.02 2.30 16 36 H 0.04 1.01 8.02 -2.38 -0.02 0.99 16 37 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 39 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 40 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 41 H 0.12 2.64 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -65.17 309.54 2.28 -62.89 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.91 Total: 13.19 kcal Atomic # 6 Polarization: -45.91 SS G_CDS: 3.45 Total: -42.46 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -3.76 Total: -81.57 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.67 Total: 47.96 kcal Total: -65.17 2.28 -62.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211467197.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.561 kcal (2) G-P(sol) polarization free energy of solvation -65.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds