Wall clock time and date at job start Mon Mar 30 2020 06:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46034 * 2 1 4 4 C 1.53042 * 109.46195 * 240.02396 * 2 1 3 5 5 H 1.09002 * 109.49900 * 300.79869 * 4 2 1 6 6 C 1.50693 * 109.50271 * 60.87147 * 4 2 1 7 7 H 1.08003 * 120.00511 * 0.02562 * 6 4 2 8 8 C 1.37883 * 119.99855 * 179.97438 * 6 4 2 9 9 N 1.31514 * 119.99981 * 0.02562 * 8 6 4 10 10 Si 1.86794 * 120.00039 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47062 * 180.02562 * 10 8 6 12 12 H 1.48500 * 109.47582 * 300.00286 * 10 8 6 13 13 H 1.48503 * 109.47233 * 60.00435 * 10 8 6 14 14 C 1.53116 * 109.27662 * 180.81847 * 4 2 1 15 15 C 1.53121 * 109.16164 * 57.65334 * 14 4 2 16 16 C 1.53040 * 109.27491 * 302.34253 * 15 14 4 17 17 N 1.46845 * 109.45091 * 119.97519 * 2 1 3 18 18 C 1.46897 * 111.00105 * 305.84478 * 17 2 1 19 19 C 1.50698 * 109.47144 * 164.99077 * 18 17 2 20 20 C 1.38243 * 119.99785 * 269.73091 * 19 18 17 21 21 C 1.38238 * 119.99570 * 179.76751 * 20 19 18 22 22 C 1.38234 * 120.00027 * 0.48252 * 21 20 19 23 23 C 1.38241 * 120.00130 * 359.78969 * 22 21 20 24 24 C 1.38230 * 119.99911 * 359.95877 * 23 22 21 25 25 H 1.08995 * 109.47123 * 187.37243 * 1 2 3 26 26 H 1.09002 * 109.46964 * 307.37749 * 1 2 3 27 27 H 1.09005 * 109.46822 * 67.36841 * 1 2 3 28 28 H 0.96991 * 120.00257 * 179.97438 * 9 8 6 29 29 H 1.09007 * 109.51969 * 177.55704 * 14 4 2 30 30 H 1.09000 * 109.52111 * 297.74653 * 14 4 2 31 31 H 1.09002 * 109.49611 * 182.40661 * 15 14 4 32 32 H 1.08992 * 109.50162 * 62.28617 * 15 14 4 33 33 H 1.08998 * 109.46435 * 299.16064 * 16 15 14 34 34 H 1.09001 * 109.45163 * 179.19063 * 16 15 14 35 35 H 1.08995 * 109.47482 * 284.99523 * 18 17 2 36 36 H 1.09005 * 109.47184 * 44.99184 * 18 17 2 37 37 H 1.07994 * 120.00225 * 359.97438 * 20 19 18 38 38 H 1.08003 * 119.99765 * 180.25534 * 21 20 19 39 39 H 1.08003 * 119.99903 * 179.77426 * 22 21 20 40 40 H 1.08001 * 120.00018 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.00045 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2500 5 1 1.6651 -1.7445 -1.2580 6 6 1.5556 0.0018 -2.4804 7 1 0.9453 0.8873 -2.3814 8 6 1.8925 -0.4669 -3.7326 9 7 2.6360 -1.5450 -3.8531 10 14 1.2928 0.4294 -5.2578 11 1 1.7878 -0.2709 -6.4702 12 1 -0.1921 0.4481 -5.2693 13 1 1.8053 1.8231 -5.2466 14 6 3.5709 -0.7364 -1.2354 15 6 4.0545 -1.4193 0.0470 16 6 3.4862 -0.6779 1.2592 17 7 2.0190 -0.6918 1.1994 18 6 1.4371 -0.1105 2.4165 19 6 1.6550 -1.0489 3.5753 20 6 0.7107 -2.0148 3.8696 21 6 0.9130 -2.8787 4.9296 22 6 2.0547 -2.7705 5.7014 23 6 2.9963 -1.8010 5.4105 24 6 2.7965 -0.9404 4.3474 25 1 -0.3633 -1.0191 0.1319 26 1 -0.3633 0.6239 0.8167 27 1 -0.3633 0.3955 -0.9486 28 1 2.8727 -1.8749 -4.7339 29 1 3.9379 -1.2868 -2.1018 30 1 3.9458 0.2866 -1.2670 31 1 5.1437 -1.3952 0.0834 32 1 3.7120 -2.4539 0.0596 33 1 3.8403 0.3529 1.2534 34 1 3.8170 -1.1704 2.1737 35 1 1.9166 0.8453 2.6278 36 1 0.3680 0.0439 2.2701 37 1 -0.1833 -2.0964 3.2693 38 1 0.1772 -3.6360 5.1570 39 1 2.2109 -3.4431 6.5318 40 1 3.8881 -1.7162 6.0138 41 1 3.5320 -0.1828 4.1204 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211467267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:29 Heat of formation + Delta-G solvation = 17.320925 kcal Electronic energy + Delta-G solvation = -19697.545088 eV Core-core repulsion = 16962.504603 eV Total energy + Delta-G solvation = -2735.040485 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.46888 -38.05703 -34.05362 -32.34056 -31.67913 -30.76480 -29.99637 -26.58669 -25.59545 -24.60353 -22.49873 -21.87886 -20.62035 -20.19960 -18.56188 -16.69108 -16.36056 -15.33723 -15.06463 -14.83959 -14.53699 -14.15723 -13.45769 -13.35682 -13.31451 -12.83868 -12.61734 -12.36820 -12.16166 -11.67209 -11.41490 -11.21789 -11.07206 -10.92241 -10.85554 -10.81225 -10.63294 -10.28649 -10.06722 -9.73366 -9.46392 -8.98812 -8.77616 -8.63535 -8.54231 -8.26620 -7.59130 -5.94473 -4.00005 1.48002 1.52997 3.33306 3.38384 3.40415 3.87065 4.44272 4.70835 4.96007 5.00691 5.10639 5.22354 5.35185 5.49026 5.63005 5.71302 5.75394 5.83661 5.90557 6.01069 6.12068 6.15812 6.19692 6.27301 6.34174 6.45091 6.56849 6.60611 6.66882 6.78256 6.80359 6.82372 6.96586 7.12325 7.13811 7.28787 7.43323 7.74214 7.79046 7.87786 8.12317 8.20931 8.51654 9.03143 9.63535 11.11551 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037648 B = 0.004861 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.549615 B = 5759.168488 C = 6060.822953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.091 3.909 3 H 0.025 0.975 4 C 0.063 3.937 5 H 0.034 0.966 6 C -0.511 4.511 7 H 0.055 0.945 8 C 0.063 3.937 9 N -0.889 5.889 10 Si 0.888 3.112 11 H -0.288 1.288 12 H -0.278 1.278 13 H -0.279 1.279 14 C -0.112 4.112 15 C -0.117 4.117 16 C 0.061 3.939 17 N -0.526 5.526 18 C 0.082 3.918 19 C -0.062 4.062 20 C -0.100 4.100 21 C -0.123 4.123 22 C -0.130 4.130 23 C -0.124 4.124 24 C -0.116 4.116 25 H 0.054 0.946 26 H 0.031 0.969 27 H 0.071 0.929 28 H 0.259 0.741 29 H 0.090 0.910 30 H 0.029 0.971 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.020 0.980 34 H 0.061 0.939 35 H 0.033 0.967 36 H 0.086 0.914 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.669 0.034 15.566 15.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.016 4.016 3 H 0.043 0.957 4 C 0.044 3.956 5 H 0.052 0.948 6 C -0.550 4.550 7 H 0.073 0.927 8 C -0.138 4.138 9 N -0.527 5.527 10 Si 0.716 3.284 11 H -0.214 1.214 12 H -0.203 1.203 13 H -0.204 1.204 14 C -0.150 4.150 15 C -0.155 4.155 16 C -0.067 4.067 17 N -0.251 5.251 18 C -0.046 4.046 19 C -0.062 4.062 20 C -0.119 4.119 21 C -0.141 4.141 22 C -0.148 4.148 23 C -0.142 4.142 24 C -0.135 4.135 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.105 0.895 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.740 -0.557 15.369 15.397 hybrid contribution 0.102 1.277 -0.798 1.509 sum -0.639 0.720 14.571 14.603 Atomic orbital electron populations 1.21868 0.95638 1.01013 1.00893 1.21823 0.94467 0.95080 0.90268 0.95705 1.18655 0.91508 0.96233 0.89163 0.94769 1.21137 1.31769 1.11524 0.90564 0.92723 1.24928 0.95146 0.94961 0.98789 1.69881 1.37074 1.22506 1.23279 0.86724 0.79139 0.79815 0.82677 1.21380 1.20333 1.20442 1.21671 0.99162 0.98164 0.95973 1.21666 0.97754 1.00165 0.95865 1.22094 0.87684 0.98014 0.98940 1.62035 1.06889 1.55208 1.00993 1.21170 1.01164 0.93477 0.88765 1.19907 0.94131 0.96740 0.95455 1.21049 0.99414 0.94690 0.96702 1.21120 0.97734 0.99249 0.95983 1.21063 0.94828 0.98830 1.00059 1.21062 0.99153 0.96145 0.97827 1.21071 0.97156 0.99695 0.95573 0.92693 0.95027 0.90965 0.93057 0.89121 0.95243 0.93674 0.92167 0.96150 0.92029 0.94860 0.89532 0.86016 0.86400 0.86614 0.86532 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.44 37.16 0.31 -2.28 16 2 C 0.09 1.89 1.92 -67.72 -0.13 1.76 16 3 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 4 C 0.06 1.57 1.78 -91.69 -0.16 1.40 16 5 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 6 C -0.51 -13.72 7.74 -34.44 -0.27 -13.99 16 7 H 0.05 1.44 6.81 -52.48 -0.36 1.08 16 8 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 9 N -0.89 -25.28 11.36 55.43 0.63 -24.65 16 10 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 C -0.11 -2.66 5.03 -26.61 -0.13 -2.80 16 15 C -0.12 -2.35 6.09 -26.65 -0.16 -2.51 16 16 C 0.06 1.10 5.23 -3.83 -0.02 1.08 16 17 N -0.53 -9.82 4.44 -228.13 -1.01 -10.83 16 18 C 0.08 1.28 4.92 -4.98 -0.02 1.25 16 19 C -0.06 -0.89 5.03 -104.62 -0.53 -1.42 16 20 C -0.10 -1.36 9.70 -39.58 -0.38 -1.75 16 21 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 22 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 23 C -0.12 -1.46 10.05 -39.58 -0.40 -1.85 16 24 C -0.12 -1.54 8.06 -39.58 -0.32 -1.86 16 25 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.03 0.51 6.45 -51.93 -0.34 0.17 16 27 H 0.07 1.46 6.47 -51.93 -0.34 1.12 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 1.03 5.87 -51.93 -0.30 0.72 16 35 H 0.03 0.51 8.01 -51.93 -0.42 0.09 16 36 H 0.09 1.30 5.53 -51.93 -0.29 1.01 16 37 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 38 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.12 1.43 7.86 -52.49 -0.41 1.02 16 LS Contribution 316.74 15.07 4.77 4.77 Total: -1.00 -28.14 316.74 -10.29 -38.43 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.55 Total: 1.24 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -3.10 Total: -25.07 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.38 Total: -35.49 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.14 -10.29 -38.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211467267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.748 kcal (2) G-P(sol) polarization free energy of solvation -28.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds