Wall clock time and date at job start Mon Mar 30 2020 06:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46034 * 2 1 4 4 C 1.53042 * 109.46195 * 240.02396 * 2 1 3 5 5 H 1.09002 * 109.49900 * 300.79869 * 4 2 1 6 6 C 1.50693 * 109.50271 * 60.87147 * 4 2 1 7 7 H 1.08003 * 120.00511 * 0.02562 * 6 4 2 8 8 C 1.37883 * 119.99855 * 179.97438 * 6 4 2 9 9 N 1.31514 * 119.99981 * 0.02562 * 8 6 4 10 10 Si 1.86794 * 120.00039 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47062 * 180.02562 * 10 8 6 12 12 H 1.48500 * 109.47582 * 300.00286 * 10 8 6 13 13 H 1.48503 * 109.47233 * 60.00435 * 10 8 6 14 14 C 1.53116 * 109.27662 * 180.81847 * 4 2 1 15 15 C 1.53121 * 109.16164 * 57.65334 * 14 4 2 16 16 C 1.53040 * 109.27491 * 302.34253 * 15 14 4 17 17 N 1.46845 * 109.45091 * 119.97519 * 2 1 3 18 18 C 1.46897 * 111.00105 * 305.84478 * 17 2 1 19 19 C 1.50698 * 109.47144 * 164.99077 * 18 17 2 20 20 C 1.38243 * 119.99785 * 269.73091 * 19 18 17 21 21 C 1.38238 * 119.99570 * 179.76751 * 20 19 18 22 22 C 1.38234 * 120.00027 * 0.48252 * 21 20 19 23 23 C 1.38241 * 120.00130 * 359.78969 * 22 21 20 24 24 C 1.38230 * 119.99911 * 359.95877 * 23 22 21 25 25 H 1.08995 * 109.47123 * 187.37243 * 1 2 3 26 26 H 1.09002 * 109.46964 * 307.37749 * 1 2 3 27 27 H 1.09005 * 109.46822 * 67.36841 * 1 2 3 28 28 H 0.96991 * 120.00257 * 179.97438 * 9 8 6 29 29 H 1.09007 * 109.51969 * 177.55704 * 14 4 2 30 30 H 1.09000 * 109.52111 * 297.74653 * 14 4 2 31 31 H 1.09002 * 109.49611 * 182.40661 * 15 14 4 32 32 H 1.08992 * 109.50162 * 62.28617 * 15 14 4 33 33 H 1.08998 * 109.46435 * 299.16064 * 16 15 14 34 34 H 1.09001 * 109.45163 * 179.19063 * 16 15 14 35 35 H 1.08995 * 109.47482 * 284.99523 * 18 17 2 36 36 H 1.09005 * 109.47184 * 44.99184 * 18 17 2 37 37 H 1.07994 * 120.00225 * 359.97438 * 20 19 18 38 38 H 1.08003 * 119.99765 * 180.25534 * 21 20 19 39 39 H 1.08003 * 119.99903 * 179.77426 * 22 21 20 40 40 H 1.08001 * 120.00018 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.00045 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2500 5 1 1.6651 -1.7445 -1.2580 6 6 1.5556 0.0018 -2.4804 7 1 0.9453 0.8873 -2.3814 8 6 1.8925 -0.4669 -3.7326 9 7 2.6360 -1.5450 -3.8531 10 14 1.2928 0.4294 -5.2578 11 1 1.7878 -0.2709 -6.4702 12 1 -0.1921 0.4481 -5.2693 13 1 1.8053 1.8231 -5.2466 14 6 3.5709 -0.7364 -1.2354 15 6 4.0545 -1.4193 0.0470 16 6 3.4862 -0.6779 1.2592 17 7 2.0190 -0.6918 1.1994 18 6 1.4371 -0.1105 2.4165 19 6 1.6550 -1.0489 3.5753 20 6 0.7107 -2.0148 3.8696 21 6 0.9130 -2.8787 4.9296 22 6 2.0547 -2.7705 5.7014 23 6 2.9963 -1.8010 5.4105 24 6 2.7965 -0.9404 4.3474 25 1 -0.3633 -1.0191 0.1319 26 1 -0.3633 0.6239 0.8167 27 1 -0.3633 0.3955 -0.9486 28 1 2.8727 -1.8749 -4.7339 29 1 3.9379 -1.2868 -2.1018 30 1 3.9458 0.2866 -1.2670 31 1 5.1437 -1.3952 0.0834 32 1 3.7120 -2.4539 0.0596 33 1 3.8403 0.3529 1.2534 34 1 3.8170 -1.1704 2.1737 35 1 1.9166 0.8453 2.6278 36 1 0.3680 0.0439 2.2701 37 1 -0.1833 -2.0964 3.2693 38 1 0.1772 -3.6360 5.1570 39 1 2.2109 -3.4431 6.5318 40 1 3.8881 -1.7162 6.0138 41 1 3.5320 -0.1828 4.1204 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211467267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:28 Heat of formation + Delta-G solvation = 3.003400 kcal Electronic energy + Delta-G solvation = -19698.165943 eV Core-core repulsion = 16962.504603 eV Total energy + Delta-G solvation = -2735.661339 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.69295 -39.40250 -35.75700 -34.03488 -33.26800 -31.71051 -31.43182 -28.28619 -27.03372 -26.37330 -23.63328 -23.19694 -22.13114 -21.57969 -20.31229 -18.46666 -17.56272 -16.78151 -16.40642 -16.21341 -16.04651 -15.54607 -14.98443 -14.82359 -14.58828 -14.26556 -14.16391 -13.62442 -13.39142 -13.29022 -12.99980 -12.85268 -12.72427 -12.63598 -12.51637 -12.19200 -11.87035 -11.81529 -11.67817 -11.57436 -11.36654 -10.75882 -10.54439 -10.33785 -9.71734 -9.58848 -9.06585 -8.04230 -6.16863 0.51764 0.59387 1.42961 1.43732 1.51086 2.44820 2.84783 3.22844 3.34108 3.91523 4.00942 4.18750 4.23980 4.25235 4.30280 4.33908 4.42969 4.51826 4.62852 4.69683 4.72312 4.80022 4.82571 4.86885 4.97802 5.08581 5.16701 5.20320 5.24259 5.27903 5.39570 5.50003 5.54010 5.64712 5.67623 5.69639 5.82250 5.99979 6.15474 6.20149 6.26274 6.39892 6.52181 6.95009 7.50077 9.00515 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037648 B = 0.004861 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.549615 B = 5759.168488 C = 6060.822953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.098 3.902 3 H 0.016 0.984 4 C 0.063 3.937 5 H -0.006 1.006 6 C -0.525 4.525 7 H 0.056 0.944 8 C 0.013 3.987 9 N -0.918 5.918 10 Si 0.950 3.050 11 H -0.287 1.287 12 H -0.271 1.271 13 H -0.273 1.273 14 C -0.106 4.106 15 C -0.110 4.110 16 C 0.067 3.933 17 N -0.536 5.536 18 C 0.086 3.914 19 C -0.081 4.081 20 C -0.117 4.117 21 C -0.128 4.128 22 C -0.129 4.129 23 C -0.126 4.126 24 C -0.127 4.127 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.258 0.742 29 H 0.057 0.943 30 H 0.022 0.978 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.025 0.975 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.727 0.424 17.578 17.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.009 4.009 3 H 0.034 0.966 4 C 0.044 3.956 5 H 0.012 0.988 6 C -0.564 4.564 7 H 0.074 0.926 8 C -0.185 4.185 9 N -0.558 5.558 10 Si 0.776 3.224 11 H -0.213 1.213 12 H -0.196 1.196 13 H -0.198 1.198 14 C -0.144 4.144 15 C -0.148 4.148 16 C -0.061 4.061 17 N -0.261 5.261 18 C -0.041 4.041 19 C -0.082 4.082 20 C -0.135 4.135 21 C -0.146 4.146 22 C -0.147 4.147 23 C -0.144 4.144 24 C -0.146 4.146 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.108 0.892 37 H 0.138 0.862 38 H 0.156 0.844 39 H 0.161 0.839 40 H 0.159 0.841 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.806 -0.159 17.399 17.419 hybrid contribution 0.129 1.102 -1.350 1.747 sum -0.678 0.943 16.049 16.091 Atomic orbital electron populations 1.21768 0.94290 1.01283 1.01280 1.21555 0.95557 0.93945 0.89854 0.96577 1.18554 0.92050 0.94141 0.90816 0.98794 1.21495 1.31581 1.11589 0.91702 0.92610 1.25698 0.95368 0.95710 1.01751 1.70036 1.38158 1.23871 1.23700 0.85734 0.78854 0.78744 0.79043 1.21261 1.19589 1.19783 1.21497 0.98661 0.97482 0.96801 1.21573 0.99162 0.99094 0.94943 1.22042 0.87453 0.98075 0.98538 1.61964 1.07271 1.55424 1.01407 1.21168 1.01093 0.94045 0.87763 1.19848 0.95314 0.97348 0.95664 1.21191 0.99505 0.95248 0.97603 1.21417 0.98579 0.99211 0.95391 1.21454 0.94124 0.98776 1.00341 1.21398 1.00073 0.95526 0.97420 1.21230 0.96912 1.00352 0.96057 0.93188 0.91821 0.92581 0.93253 0.92435 0.95964 0.91502 0.93551 0.95723 0.89890 0.94215 0.89207 0.86211 0.84381 0.83879 0.84097 0.85919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.86 8.44 71.98 0.61 -4.25 16 2 C 0.10 4.14 1.92 44.94 0.09 4.23 16 3 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 4 C 0.06 3.23 1.78 -11.49 -0.02 3.21 16 5 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 6 C -0.53 -28.87 7.74 25.60 0.20 -28.67 16 7 H 0.06 2.98 6.81 -2.91 -0.02 2.96 16 8 C 0.01 0.73 5.30 84.66 0.45 1.18 16 9 N -0.92 -53.93 11.36 21.45 0.24 -53.68 16 10 Si 0.95 43.90 29.54 68.60 2.03 45.92 16 11 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 14 C -0.11 -5.22 5.03 30.67 0.15 -5.07 16 15 C -0.11 -4.42 6.09 30.65 0.19 -4.24 16 16 C 0.07 2.34 5.23 86.33 0.45 2.79 16 17 N -0.54 -19.64 4.44 -875.65 -3.89 -23.54 16 18 C 0.09 2.57 4.92 85.56 0.42 2.99 16 19 C -0.08 -2.20 5.03 -19.86 -0.10 -2.30 16 20 C -0.12 -3.00 9.70 22.27 0.22 -2.79 16 21 C -0.13 -2.75 10.05 22.27 0.22 -2.53 16 22 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 23 C -0.13 -2.57 10.05 22.27 0.22 -2.34 16 24 C -0.13 -3.05 8.06 22.27 0.18 -2.87 16 25 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.06 1.96 6.45 -2.39 -0.02 1.95 16 27 H 0.06 2.27 6.47 -2.38 -0.02 2.26 16 28 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 29 H 0.06 3.20 6.16 -2.38 -0.01 3.18 16 30 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 2.59 5.87 -2.39 -0.01 2.58 16 35 H 0.04 1.13 8.01 -2.39 -0.02 1.11 16 36 H 0.09 2.56 5.53 -2.38 -0.01 2.55 16 37 H 0.12 3.01 8.06 -2.91 -0.02 2.98 16 38 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 39 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 40 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 41 H 0.12 2.71 7.86 -2.91 -0.02 2.69 16 Total: -1.00 -61.72 316.74 2.86 -58.85 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.99 Total: 15.38 kcal Atomic # 6 Polarization: -46.44 SS G_CDS: 3.50 Total: -42.94 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: -3.65 Total: -77.22 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -61.72 2.86 -58.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211467267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.857 kcal (2) G-P(sol) polarization free energy of solvation -61.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds