Wall clock time and date at job start Mon Mar 30 2020 06:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.45567 * 2 1 4 4 C 1.53039 * 109.46108 * 119.97870 * 2 1 3 5 5 H 1.08994 * 109.50227 * 180.76982 * 4 2 1 6 6 C 1.50693 * 109.50296 * 300.89404 * 4 2 1 7 7 H 1.08001 * 120.00305 * 359.97438 * 6 4 2 8 8 C 1.37876 * 120.00157 * 180.02562 * 6 4 2 9 9 N 1.31517 * 119.99792 * 359.97438 * 8 6 4 10 10 Si 1.86800 * 120.00183 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46887 * 60.00373 * 10 8 6 12 12 H 1.48501 * 109.47267 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47172 * 300.00277 * 10 8 6 14 14 C 1.53126 * 109.28009 * 60.83157 * 4 2 1 15 15 C 1.53099 * 109.15071 * 57.65227 * 14 4 2 16 16 C 1.53034 * 109.29509 * 302.33888 * 15 14 4 17 17 N 1.46847 * 109.51345 * 59.18740 * 16 15 14 18 18 C 1.46898 * 110.99897 * 174.16738 * 17 16 15 19 19 C 1.50700 * 109.47111 * 293.95217 * 18 17 16 20 20 C 1.38231 * 119.99718 * 269.72633 * 19 18 17 21 21 C 1.38237 * 119.99874 * 179.76728 * 20 19 18 22 22 C 1.38228 * 119.99912 * 0.48462 * 21 20 19 23 23 C 1.38239 * 120.00113 * 359.79003 * 22 21 20 24 24 C 1.38232 * 119.99828 * 90.00218 * 19 18 17 25 25 H 1.08998 * 109.47737 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47071 * 299.97278 * 1 2 3 27 27 H 1.09005 * 109.47378 * 59.96419 * 1 2 3 28 28 H 0.97005 * 119.99516 * 180.02562 * 9 8 6 29 29 H 1.08990 * 109.52264 * 177.55890 * 14 4 2 30 30 H 1.09002 * 109.52383 * 297.68676 * 14 4 2 31 31 H 1.09007 * 109.48839 * 182.39531 * 15 14 4 32 32 H 1.09009 * 109.50682 * 62.29317 * 15 14 4 33 33 H 1.09002 * 109.46271 * 299.17460 * 16 15 14 34 34 H 1.08994 * 109.46242 * 179.19760 * 16 15 14 35 35 H 1.09000 * 109.47095 * 53.95538 * 18 17 16 36 36 H 1.09006 * 109.47048 * 173.94984 * 18 17 16 37 37 H 1.08004 * 120.00526 * 0.02562 * 20 19 18 38 38 H 1.07996 * 120.00221 * 180.25372 * 21 20 19 39 39 H 1.08004 * 120.00699 * 179.76870 * 22 21 20 40 40 H 1.07996 * 120.00100 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.00300 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7210 1.2499 5 1 3.1297 -0.7095 1.2575 6 6 1.5198 -0.0236 2.4803 7 1 0.8889 0.8473 2.3814 8 6 1.8503 -0.4967 3.7325 9 7 2.6190 -1.5570 3.8530 10 14 1.2062 0.3682 5.2578 11 1 -0.2787 0.3494 5.2476 12 1 1.7012 -0.3320 6.4702 13 1 1.6834 1.7744 5.2681 14 6 1.5441 -2.1697 1.2355 15 6 2.0267 -2.8530 -0.0468 16 6 1.5172 -2.0704 -1.2592 17 7 2.0192 -0.6917 -1.1995 18 6 1.6651 0.0506 -2.4166 19 6 2.3899 -0.5440 -3.5965 20 6 3.6373 -0.0672 -3.9532 21 6 4.3043 -0.6158 -5.0325 22 6 3.7194 -1.6345 -5.7612 23 6 2.4694 -2.1075 -5.4080 24 6 1.8047 -1.5623 -4.3255 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5134 0.8903 27 1 -0.3634 0.5144 -0.8897 28 1 2.8512 -1.8901 4.7340 29 1 1.9407 -2.6990 2.1018 30 1 0.4547 -2.1823 1.2683 31 1 1.6412 -3.8720 -0.0831 32 1 3.1165 -2.8750 -0.0595 33 1 0.4272 -2.0607 -1.2533 34 1 1.8711 -2.5465 -2.1736 35 1 0.5894 -0.0132 -2.5810 36 1 1.9536 1.0955 -2.3017 37 1 4.0928 0.7312 -3.3861 38 1 5.2807 -0.2461 -5.3088 39 1 4.2388 -2.0607 -6.6069 40 1 2.0123 -2.9030 -5.9776 41 1 0.8279 -1.9315 -4.0497 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211467347.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:31 Heat of formation + Delta-G solvation = 19.495017 kcal Electronic energy + Delta-G solvation = -19768.887150 eV Core-core repulsion = 17033.940941 eV Total energy + Delta-G solvation = -2734.946209 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.58137 -38.26632 -34.08110 -32.18982 -31.28437 -30.77418 -29.94859 -26.85912 -25.43537 -24.65887 -22.49949 -21.89653 -21.27488 -20.46168 -17.65033 -16.65005 -16.25657 -15.33340 -15.14058 -15.04169 -14.57293 -13.93351 -13.65542 -13.41317 -13.21328 -12.70184 -12.64577 -12.43886 -12.11031 -11.81044 -11.65040 -11.18260 -11.11506 -10.94276 -10.83282 -10.79183 -10.59323 -10.38000 -10.09521 -9.71771 -9.27201 -8.95266 -8.77768 -8.65040 -8.57769 -8.25968 -7.52980 -5.93999 -3.99504 1.46554 1.51837 3.33493 3.38587 3.40609 3.86224 4.44703 4.73306 4.94972 4.99588 5.09476 5.21166 5.35899 5.49906 5.61836 5.72745 5.76669 5.81227 5.91135 6.04156 6.10735 6.16104 6.17076 6.25520 6.29848 6.42024 6.55585 6.59541 6.69597 6.76389 6.79713 6.84036 6.97859 7.04699 7.11532 7.31721 7.44802 7.77330 7.79681 7.89055 8.12702 8.21781 8.52221 9.03701 9.64144 11.11977 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.038982 B = 0.004755 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.110362 B = 5887.098888 C = 5978.761284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.090 3.910 3 H 0.066 0.934 4 C 0.063 3.937 5 H 0.032 0.968 6 C -0.511 4.511 7 H 0.055 0.945 8 C 0.063 3.937 9 N -0.889 5.889 10 Si 0.888 3.112 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.278 1.278 14 C -0.111 4.111 15 C -0.117 4.117 16 C 0.056 3.944 17 N -0.525 5.525 18 C 0.088 3.912 19 C -0.064 4.064 20 C -0.100 4.100 21 C -0.123 4.123 22 C -0.129 4.129 23 C -0.124 4.124 24 C -0.115 4.115 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.028 0.972 28 H 0.259 0.741 29 H 0.088 0.912 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.027 0.973 34 H 0.060 0.940 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.713 -0.105 -15.693 15.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.018 4.018 3 H 0.084 0.916 4 C 0.044 3.956 5 H 0.051 0.949 6 C -0.550 4.550 7 H 0.073 0.927 8 C -0.138 4.138 9 N -0.527 5.527 10 Si 0.716 3.284 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 C -0.149 4.149 15 C -0.155 4.155 16 C -0.072 4.072 17 N -0.248 5.248 18 C -0.040 4.040 19 C -0.064 4.064 20 C -0.119 4.119 21 C -0.141 4.141 22 C -0.147 4.147 23 C -0.142 4.142 24 C -0.134 4.134 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.119 -0.236 -15.504 15.507 hybrid contribution -1.236 0.390 0.820 1.534 sum -1.355 0.154 -14.685 14.748 Atomic orbital electron populations 1.22392 0.98768 1.01530 1.00475 1.21886 0.92083 0.97519 0.90272 0.91598 1.18632 0.96593 0.91150 0.89190 0.94941 1.21136 1.30752 1.12513 0.90553 0.92710 1.24929 0.95082 0.95040 0.98783 1.69892 1.36415 1.23183 1.23243 0.86730 0.79153 0.79790 0.82710 1.20447 1.21393 1.20361 1.21671 0.98284 0.99103 0.95827 1.21661 1.00890 0.96942 0.95964 1.22126 0.96692 0.89524 0.98829 1.62252 1.59629 1.01987 1.00976 1.21053 0.96466 0.97799 0.88633 1.19906 0.95017 0.95914 0.95612 1.21060 0.94266 1.00132 0.96416 1.21120 0.99728 0.97159 0.96094 1.21067 0.95806 0.97725 1.00133 1.21065 0.95491 1.00120 0.97535 1.21070 1.00094 0.96631 0.95603 0.92662 0.91261 0.95331 0.93082 0.89328 0.94824 0.93780 0.92283 0.95506 0.92150 0.94446 0.90444 0.85970 0.86387 0.86598 0.86509 0.86524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.31 7.92 37.16 0.29 -3.01 16 2 C 0.09 1.85 2.43 -67.72 -0.16 1.69 16 3 H 0.07 1.38 8.01 -51.93 -0.42 0.97 16 4 C 0.06 1.55 2.04 -91.69 -0.19 1.37 16 5 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 6 C -0.51 -13.66 7.83 -34.44 -0.27 -13.93 16 7 H 0.05 1.44 6.65 -52.49 -0.35 1.09 16 8 C 0.06 1.72 5.31 -17.82 -0.09 1.62 16 9 N -0.89 -25.27 11.36 55.43 0.63 -24.64 16 10 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 C -0.11 -2.61 4.72 -26.62 -0.13 -2.73 16 15 C -0.12 -2.34 6.09 -26.66 -0.16 -2.50 16 16 C 0.06 1.01 4.87 -3.84 -0.02 0.99 16 17 N -0.52 -9.68 4.59 -228.12 -1.05 -10.73 16 18 C 0.09 1.36 4.58 -4.98 -0.02 1.34 16 19 C -0.06 -0.91 4.89 -104.63 -0.51 -1.43 16 20 C -0.10 -1.35 9.70 -39.58 -0.38 -1.74 16 21 C -0.12 -1.46 10.05 -39.59 -0.40 -1.86 16 22 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 23 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 24 C -0.12 -1.51 7.88 -39.58 -0.31 -1.82 16 25 H 0.05 1.07 4.80 -51.93 -0.25 0.82 16 26 H 0.07 1.41 6.56 -51.93 -0.34 1.06 16 27 H 0.03 0.47 6.78 -51.93 -0.35 0.12 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.09 2.35 6.16 -51.93 -0.32 2.03 16 30 H 0.03 0.79 6.56 -51.93 -0.34 0.45 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 33 H 0.03 0.48 6.19 -51.93 -0.32 0.16 16 34 H 0.06 1.01 5.75 -51.93 -0.30 0.71 16 35 H 0.04 0.56 6.91 -51.93 -0.36 0.20 16 36 H 0.08 1.15 7.92 -51.93 -0.41 0.74 16 37 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 38 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.12 1.43 7.95 -52.49 -0.42 1.01 16 LS Contribution 310.43 15.07 4.68 4.68 Total: -1.00 -27.96 310.43 -10.18 -38.14 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.27 Total: 2.14 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: -3.15 Total: -25.71 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: -0.42 Total: -35.37 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.96 -10.18 -38.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211467347.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.638 kcal (2) G-P(sol) polarization free energy of solvation -27.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds