Wall clock time and date at job start Mon Mar 30 2020 06:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.45567 * 2 1 4 4 C 1.53039 * 109.46108 * 119.97870 * 2 1 3 5 5 H 1.08994 * 109.50227 * 180.76982 * 4 2 1 6 6 C 1.50693 * 109.50296 * 300.89404 * 4 2 1 7 7 H 1.08001 * 120.00305 * 359.97438 * 6 4 2 8 8 C 1.37876 * 120.00157 * 180.02562 * 6 4 2 9 9 N 1.31517 * 119.99792 * 359.97438 * 8 6 4 10 10 Si 1.86800 * 120.00183 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46887 * 60.00373 * 10 8 6 12 12 H 1.48501 * 109.47267 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47172 * 300.00277 * 10 8 6 14 14 C 1.53126 * 109.28009 * 60.83157 * 4 2 1 15 15 C 1.53099 * 109.15071 * 57.65227 * 14 4 2 16 16 C 1.53034 * 109.29509 * 302.33888 * 15 14 4 17 17 N 1.46847 * 109.51345 * 59.18740 * 16 15 14 18 18 C 1.46898 * 110.99897 * 174.16738 * 17 16 15 19 19 C 1.50700 * 109.47111 * 293.95217 * 18 17 16 20 20 C 1.38231 * 119.99718 * 269.72633 * 19 18 17 21 21 C 1.38237 * 119.99874 * 179.76728 * 20 19 18 22 22 C 1.38228 * 119.99912 * 0.48462 * 21 20 19 23 23 C 1.38239 * 120.00113 * 359.79003 * 22 21 20 24 24 C 1.38232 * 119.99828 * 90.00218 * 19 18 17 25 25 H 1.08998 * 109.47737 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47071 * 299.97278 * 1 2 3 27 27 H 1.09005 * 109.47378 * 59.96419 * 1 2 3 28 28 H 0.97005 * 119.99516 * 180.02562 * 9 8 6 29 29 H 1.08990 * 109.52264 * 177.55890 * 14 4 2 30 30 H 1.09002 * 109.52383 * 297.68676 * 14 4 2 31 31 H 1.09007 * 109.48839 * 182.39531 * 15 14 4 32 32 H 1.09009 * 109.50682 * 62.29317 * 15 14 4 33 33 H 1.09002 * 109.46271 * 299.17460 * 16 15 14 34 34 H 1.08994 * 109.46242 * 179.19760 * 16 15 14 35 35 H 1.09000 * 109.47095 * 53.95538 * 18 17 16 36 36 H 1.09006 * 109.47048 * 173.94984 * 18 17 16 37 37 H 1.08004 * 120.00526 * 0.02562 * 20 19 18 38 38 H 1.07996 * 120.00221 * 180.25372 * 21 20 19 39 39 H 1.08004 * 120.00699 * 179.76870 * 22 21 20 40 40 H 1.07996 * 120.00100 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.00300 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7210 1.2499 5 1 3.1297 -0.7095 1.2575 6 6 1.5198 -0.0236 2.4803 7 1 0.8889 0.8473 2.3814 8 6 1.8503 -0.4967 3.7325 9 7 2.6190 -1.5570 3.8530 10 14 1.2062 0.3682 5.2578 11 1 -0.2787 0.3494 5.2476 12 1 1.7012 -0.3320 6.4702 13 1 1.6834 1.7744 5.2681 14 6 1.5441 -2.1697 1.2355 15 6 2.0267 -2.8530 -0.0468 16 6 1.5172 -2.0704 -1.2592 17 7 2.0192 -0.6917 -1.1995 18 6 1.6651 0.0506 -2.4166 19 6 2.3899 -0.5440 -3.5965 20 6 3.6373 -0.0672 -3.9532 21 6 4.3043 -0.6158 -5.0325 22 6 3.7194 -1.6345 -5.7612 23 6 2.4694 -2.1075 -5.4080 24 6 1.8047 -1.5623 -4.3255 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5134 0.8903 27 1 -0.3634 0.5144 -0.8897 28 1 2.8512 -1.8901 4.7340 29 1 1.9407 -2.6990 2.1018 30 1 0.4547 -2.1823 1.2683 31 1 1.6412 -3.8720 -0.0831 32 1 3.1165 -2.8750 -0.0595 33 1 0.4272 -2.0607 -1.2533 34 1 1.8711 -2.5465 -2.1736 35 1 0.5894 -0.0132 -2.5810 36 1 1.9536 1.0955 -2.3017 37 1 4.0928 0.7312 -3.3861 38 1 5.2807 -0.2461 -5.3088 39 1 4.2388 -2.0607 -6.6069 40 1 2.0123 -2.9030 -5.9776 41 1 0.8279 -1.9315 -4.0497 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211467347.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:31 Heat of formation + Delta-G solvation = 5.043059 kcal Electronic energy + Delta-G solvation = -19769.513834 eV Core-core repulsion = 17033.940941 eV Total energy + Delta-G solvation = -2735.572893 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.86414 -39.53931 -35.75633 -33.88605 -32.84878 -31.72250 -31.39314 -28.49266 -26.95600 -26.35785 -23.59526 -23.34834 -22.84733 -21.68914 -19.35732 -18.26883 -17.57090 -16.92815 -16.55114 -16.12313 -16.11045 -15.36243 -15.28429 -14.72603 -14.38849 -14.18144 -14.12672 -13.80209 -13.50114 -13.25989 -13.21392 -12.86867 -12.65528 -12.55226 -12.52353 -12.24677 -11.86943 -11.82042 -11.77045 -11.55742 -11.12310 -10.69917 -10.58571 -10.32555 -9.71716 -9.60510 -8.96925 -8.03469 -6.16058 0.51103 0.58804 1.43129 1.43865 1.51167 2.45239 2.85881 3.23874 3.37311 3.89705 4.02486 4.18446 4.24126 4.29119 4.29696 4.37394 4.44527 4.52625 4.62733 4.69443 4.73623 4.77499 4.83280 4.86352 5.02333 5.08097 5.17765 5.19684 5.24357 5.29425 5.34976 5.50638 5.56936 5.64438 5.69125 5.69246 5.82021 6.03019 6.18403 6.20701 6.28569 6.41702 6.53719 6.96312 7.51056 9.01185 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.038982 B = 0.004755 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.110362 B = 5887.098888 C = 5978.761284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 H 0.058 0.942 4 C 0.062 3.938 5 H -0.013 1.013 6 C -0.524 4.524 7 H 0.057 0.943 8 C 0.013 3.987 9 N -0.918 5.918 10 Si 0.950 3.050 11 H -0.271 1.271 12 H -0.288 1.288 13 H -0.273 1.273 14 C -0.102 4.102 15 C -0.112 4.112 16 C 0.065 3.935 17 N -0.537 5.537 18 C 0.093 3.907 19 C -0.083 4.083 20 C -0.118 4.118 21 C -0.128 4.128 22 C -0.129 4.129 23 C -0.126 4.126 24 C -0.125 4.125 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.258 0.742 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.065 0.935 32 H 0.042 0.958 33 H 0.035 0.965 34 H 0.079 0.921 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.138 0.862 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.543 -0.187 -17.717 17.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.010 4.010 3 H 0.076 0.924 4 C 0.043 3.957 5 H 0.006 0.994 6 C -0.562 4.562 7 H 0.075 0.925 8 C -0.186 4.186 9 N -0.558 5.558 10 Si 0.776 3.224 11 H -0.196 1.196 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.140 4.140 15 C -0.149 4.149 16 C -0.063 4.063 17 N -0.261 5.261 18 C -0.034 4.034 19 C -0.084 4.084 20 C -0.137 4.137 21 C -0.146 4.146 22 C -0.147 4.147 23 C -0.144 4.144 24 C -0.144 4.144 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.137 0.863 38 H 0.156 0.844 39 H 0.161 0.839 40 H 0.160 0.840 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.955 -0.308 -17.545 17.573 hybrid contribution -0.908 0.405 1.375 1.697 sum -1.863 0.098 -16.169 16.276 Atomic orbital electron populations 1.22254 0.97241 1.01487 1.01093 1.21584 0.93110 0.96604 0.89739 0.92383 1.18533 0.93799 0.92430 0.90896 0.99448 1.21501 1.30502 1.12581 0.91661 0.92525 1.25699 0.95407 0.95711 1.01754 1.70052 1.37600 1.24507 1.23635 0.85742 0.78815 0.78761 0.79092 1.19627 1.21326 1.19788 1.21456 0.97756 0.98356 0.96406 1.21584 0.99864 0.98235 0.95255 1.22049 0.97020 0.89011 0.98214 1.62143 1.60139 1.02417 1.01393 1.21039 0.97184 0.97540 0.87636 1.19852 0.95587 0.97141 0.95780 1.21198 0.94478 1.00642 0.97360 1.21411 1.00527 0.97189 0.95498 1.21456 0.95733 0.96997 1.00468 1.21406 0.95586 1.00348 0.97072 1.21229 1.00598 0.96447 0.96097 0.92946 0.92777 0.92493 0.93310 0.92870 0.95007 0.91626 0.93943 0.94671 0.90273 0.93559 0.90407 0.86322 0.84420 0.83865 0.84038 0.85786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.02 7.92 71.98 0.57 -5.46 16 2 C 0.10 4.04 2.43 44.94 0.11 4.15 16 3 H 0.06 2.47 8.01 -2.39 -0.02 2.45 16 4 C 0.06 3.17 2.04 -11.49 -0.02 3.14 16 5 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 6 C -0.52 -28.67 7.83 25.60 0.20 -28.47 16 7 H 0.06 3.01 6.65 -2.91 -0.02 2.99 16 8 C 0.01 0.70 5.31 84.65 0.45 1.15 16 9 N -0.92 -53.97 11.36 21.45 0.24 -53.72 16 10 Si 0.95 43.89 29.54 68.60 2.03 45.92 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 14 C -0.10 -4.90 4.72 30.67 0.14 -4.76 16 15 C -0.11 -4.45 6.09 30.64 0.19 -4.26 16 16 C 0.06 2.22 4.87 86.32 0.42 2.64 16 17 N -0.54 -19.49 4.59 -875.65 -4.02 -23.51 16 18 C 0.09 2.74 4.58 85.56 0.39 3.14 16 19 C -0.08 -2.24 4.89 -19.87 -0.10 -2.34 16 20 C -0.12 -3.05 9.70 22.27 0.22 -2.83 16 21 C -0.13 -2.76 10.05 22.27 0.22 -2.54 16 22 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 23 C -0.13 -2.53 10.05 22.27 0.22 -2.31 16 24 C -0.13 -2.96 7.88 22.27 0.18 -2.78 16 25 H 0.05 1.96 4.80 -2.39 -0.01 1.95 16 26 H 0.05 2.16 6.56 -2.38 -0.02 2.14 16 27 H 0.06 1.78 6.78 -2.38 -0.02 1.76 16 28 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 29 H 0.05 2.93 6.16 -2.39 -0.01 2.92 16 30 H 0.03 1.50 6.56 -2.39 -0.02 1.49 16 31 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 32 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.04 1.17 6.19 -2.39 -0.01 1.15 16 34 H 0.08 2.46 5.75 -2.39 -0.01 2.45 16 35 H 0.05 1.28 6.91 -2.39 -0.02 1.26 16 36 H 0.08 2.25 7.92 -2.38 -0.02 2.23 16 37 H 0.12 3.02 8.06 -2.91 -0.02 2.99 16 38 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 39 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 41 H 0.12 2.68 7.95 -2.91 -0.02 2.66 16 Total: -1.00 -61.40 310.43 2.66 -58.74 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 1.00 Total: 16.35 kcal Atomic # 6 Polarization: -47.18 SS G_CDS: 3.41 Total: -43.77 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -3.78 Total: -77.24 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -61.40 2.66 -58.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211467347.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.785 kcal (2) G-P(sol) polarization free energy of solvation -61.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds