Wall clock time and date at job start Mon Mar 30 2020 07:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35969 * 117.00421 * 2 1 4 4 C 1.38709 * 120.01087 * 89.99357 * 3 2 1 5 5 C 1.50699 * 119.96326 * 0.02562 * 4 3 2 6 6 C 1.50706 * 109.46817 * 84.72500 * 5 4 3 7 7 H 1.07995 * 120.00167 * 359.72198 * 6 5 4 8 8 C 1.37879 * 119.99394 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00338 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99424 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47474 * 90.00322 * 10 8 6 12 12 H 1.48507 * 109.46754 * 210.00056 * 10 8 6 13 13 H 1.48498 * 109.47278 * 329.99887 * 10 8 6 14 14 C 1.38220 * 120.07545 * 179.72899 * 4 3 2 15 15 C 1.38346 * 120.09903 * 0.30186 * 14 4 3 16 16 F 1.35097 * 119.99180 * 179.97438 * 15 14 4 17 17 C 1.38898 * 120.01966 * 359.97392 * 15 14 4 18 18 O 1.35980 * 120.03339 * 180.02562 * 17 15 14 19 19 C 1.38672 * 119.92582 * 0.02562 * 17 15 14 20 20 Cl 1.73602 * 120.05068 * 180.02562 * 19 17 15 21 21 H 1.08996 * 109.47295 * 300.00155 * 1 2 3 22 22 H 1.09007 * 109.46928 * 60.00037 * 1 2 3 23 23 H 1.09001 * 109.47633 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47247 * 324.72563 * 5 4 3 25 25 H 1.09001 * 109.47358 * 204.71989 * 5 4 3 26 26 H 0.96996 * 119.99730 * 179.97438 * 9 8 6 27 27 H 1.08003 * 119.95582 * 180.27140 * 14 4 3 28 28 H 0.96701 * 114.00221 * 90.00453 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 2.3612 1.8296 1.2011 5 6 2.0192 1.1576 2.5059 6 6 3.1148 0.1908 2.8752 7 1 3.9706 0.0715 2.2275 8 6 3.0218 -0.5450 4.0375 9 7 1.9769 -0.4036 4.8236 10 14 4.3801 -1.7427 4.4957 11 1 5.4022 -1.0425 5.3144 12 1 3.8055 -2.8673 5.2771 13 1 5.0122 -2.2706 3.2600 14 6 2.9938 3.0586 1.2027 15 6 3.3090 3.6782 0.0066 16 9 3.9269 4.8795 0.0106 17 6 2.9904 3.0654 -1.1985 18 8 3.3006 3.6739 -2.3744 19 6 2.3557 1.8325 -1.2012 20 17 1.9566 1.0634 -2.7055 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.0783 0.6175 2.4007 25 1 1.9205 1.9107 3.2876 26 1 1.9114 -0.9216 5.6410 27 1 3.2421 3.5361 2.1390 28 1 4.1757 3.4456 -2.7166 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216629928.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:27 Heat of formation + Delta-G solvation = -112.004770 kcal Electronic energy + Delta-G solvation = -17316.277545 eV Core-core repulsion = 14080.351071 eV Total energy + Delta-G solvation = -3235.926474 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 260.040 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.69793 -39.88601 -37.93049 -36.31227 -35.98104 -33.25764 -30.82758 -29.61024 -27.23136 -26.15805 -23.56930 -22.44372 -21.02982 -18.67838 -17.22807 -17.00352 -16.54855 -16.43323 -15.43399 -14.98634 -14.69248 -14.56751 -14.27245 -14.12637 -13.12734 -12.84902 -12.54321 -12.34190 -11.82108 -11.62210 -11.32337 -11.10662 -10.83734 -10.66171 -10.61785 -10.55650 -9.90483 -9.53584 -9.48566 -8.48961 -8.39001 -8.00836 -6.11929 -4.15038 1.13913 1.23354 2.20637 3.27836 3.34199 3.38239 3.49377 3.85088 4.35228 4.40258 4.52754 5.18213 5.24308 5.30036 5.53114 5.60216 5.73344 5.83924 6.00503 6.02288 6.45382 6.51105 6.78876 7.35078 7.49254 7.55782 7.81645 7.84544 8.17345 8.87162 9.48562 10.98334 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.021511 B = 0.007229 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.349976 B = 3872.290707 C = 4552.256327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.307 6.307 3 C 0.107 3.893 4 C -0.019 4.019 5 C 0.054 3.946 6 C -0.507 4.507 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.272 1.272 14 C -0.130 4.130 15 C 0.081 3.919 16 F -0.133 7.133 17 C 0.060 3.940 18 O -0.478 6.478 19 C -0.058 4.058 20 Cl -0.050 7.050 21 H 0.052 0.948 22 H 0.039 0.961 23 H 0.093 0.907 24 H 0.040 0.960 25 H 0.035 0.965 26 H 0.263 0.737 27 H 0.148 0.852 28 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.485 4.678 -10.889 11.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.223 6.223 3 C 0.062 3.938 4 C -0.020 4.020 5 C 0.018 3.982 6 C -0.545 4.545 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.197 1.197 14 C -0.149 4.149 15 C 0.061 3.939 16 F -0.111 7.111 17 C 0.013 3.987 18 O -0.287 6.287 19 C -0.086 4.086 20 Cl -0.021 7.021 21 H 0.070 0.930 22 H 0.058 0.942 23 H 0.112 0.888 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.166 0.834 28 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -1.063 4.656 -10.811 11.819 hybrid contribution 1.162 -0.558 0.057 1.290 sum 0.099 4.098 -10.754 11.509 Atomic orbital electron populations 1.22967 0.79191 1.03279 1.00311 1.86145 1.19456 1.22865 1.93859 1.18177 0.98972 0.87262 0.89421 1.20979 0.92309 0.91272 0.97461 1.18370 0.98335 0.95467 0.86058 1.20906 1.05163 1.22180 1.06221 0.92361 1.24948 0.95946 0.96938 0.96188 1.69936 1.28620 1.41485 1.13220 0.86502 0.81810 0.80639 0.78593 1.20581 1.21112 1.19692 1.21091 1.00802 0.96171 0.96867 1.17852 0.99362 0.83307 0.93370 1.91473 1.80285 1.42063 1.97305 1.17645 1.04265 0.91699 0.85111 1.84894 1.39546 1.69203 1.35050 1.21532 1.05791 0.93377 0.87874 1.98337 1.92351 1.80619 1.30784 0.92952 0.94214 0.88823 0.94173 0.94689 0.92735 0.83379 0.75813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 10.80 101.05 1.09 1.67 15 2 O -0.31 -6.05 9.14 -19.64 -0.18 -6.22 15 3 C 0.11 2.07 5.69 -39.23 -0.22 1.85 15 4 C -0.02 -0.39 5.08 -104.45 -0.53 -0.92 15 5 C 0.05 1.31 4.82 -29.03 -0.14 1.17 15 6 C -0.51 -13.58 9.09 -34.44 -0.31 -13.89 15 7 H 0.06 1.57 7.74 -52.49 -0.41 1.17 15 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 9 N -0.89 -25.31 13.29 55.43 0.74 -24.58 15 10 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 15 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 13 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 14 C -0.13 -2.36 9.65 -39.55 -0.38 -2.75 15 15 C 0.08 1.37 7.31 -39.30 -0.29 1.09 15 16 F -0.13 -2.17 17.11 2.25 0.04 -2.13 15 17 C 0.06 0.97 6.70 -39.18 -0.26 0.71 15 18 O -0.48 -6.73 12.82 -19.68 -0.25 -6.98 15 19 C -0.06 -1.00 6.34 -39.24 -0.25 -1.25 15 20 Cl -0.05 -0.76 28.04 -51.86 -1.45 -2.22 15 21 H 0.05 0.84 7.17 -51.93 -0.37 0.47 15 22 H 0.04 0.55 8.14 -51.93 -0.42 0.13 15 23 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15 24 H 0.04 1.01 6.42 -51.93 -0.33 0.67 15 25 H 0.03 0.87 8.05 -51.93 -0.42 0.45 15 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 15 27 H 0.15 2.51 8.06 -52.48 -0.42 2.09 15 28 H 0.39 3.71 9.06 45.56 0.41 4.13 15 LS Contribution 273.29 15.07 4.12 4.12 Total: -1.00 -29.38 273.29 -4.93 -34.30 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -1.52 Total: -1.59 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -1.39 Total: -10.75 kcal Atomic # 7 Polarization: -25.31 SS G_CDS: 0.74 Total: -24.58 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.43 Total: -13.21 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.45 Total: -2.22 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.38 -4.93 -34.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216629928.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.700 kcal (2) G-P(sol) polarization free energy of solvation -29.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds