Wall clock time and date at job start Mon Mar 30 2020 07:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35969 * 117.00421 * 2 1 4 4 C 1.38709 * 120.01087 * 89.99357 * 3 2 1 5 5 C 1.50699 * 119.96326 * 0.02562 * 4 3 2 6 6 C 1.50706 * 109.46817 * 84.72500 * 5 4 3 7 7 H 1.07995 * 120.00167 * 359.72198 * 6 5 4 8 8 C 1.37879 * 119.99394 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00338 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99424 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47474 * 90.00322 * 10 8 6 12 12 H 1.48507 * 109.46754 * 210.00056 * 10 8 6 13 13 H 1.48498 * 109.47278 * 329.99887 * 10 8 6 14 14 C 1.38220 * 120.07545 * 179.72899 * 4 3 2 15 15 C 1.38346 * 120.09903 * 0.30186 * 14 4 3 16 16 F 1.35097 * 119.99180 * 179.97438 * 15 14 4 17 17 C 1.38898 * 120.01966 * 359.97392 * 15 14 4 18 18 O 1.35980 * 120.03339 * 180.02562 * 17 15 14 19 19 C 1.38672 * 119.92582 * 0.02562 * 17 15 14 20 20 Cl 1.73602 * 120.05068 * 180.02562 * 19 17 15 21 21 H 1.08996 * 109.47295 * 300.00155 * 1 2 3 22 22 H 1.09007 * 109.46928 * 60.00037 * 1 2 3 23 23 H 1.09001 * 109.47633 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47247 * 324.72563 * 5 4 3 25 25 H 1.09001 * 109.47358 * 204.71989 * 5 4 3 26 26 H 0.96996 * 119.99730 * 179.97438 * 9 8 6 27 27 H 1.08003 * 119.95582 * 180.27140 * 14 4 3 28 28 H 0.96701 * 114.00221 * 90.00453 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 2.3612 1.8296 1.2011 5 6 2.0192 1.1576 2.5059 6 6 3.1148 0.1908 2.8752 7 1 3.9706 0.0715 2.2275 8 6 3.0218 -0.5450 4.0375 9 7 1.9769 -0.4036 4.8236 10 14 4.3801 -1.7427 4.4957 11 1 5.4022 -1.0425 5.3144 12 1 3.8055 -2.8673 5.2771 13 1 5.0122 -2.2706 3.2600 14 6 2.9938 3.0586 1.2027 15 6 3.3090 3.6782 0.0066 16 9 3.9269 4.8795 0.0106 17 6 2.9904 3.0654 -1.1985 18 8 3.3006 3.6739 -2.3744 19 6 2.3557 1.8325 -1.2012 20 17 1.9566 1.0634 -2.7055 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.0783 0.6175 2.4007 25 1 1.9205 1.9107 3.2876 26 1 1.9114 -0.9216 5.6410 27 1 3.2421 3.5361 2.1390 28 1 4.1757 3.4456 -2.7166 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216629928.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:27 Heat of formation + Delta-G solvation = -130.989672 kcal Electronic energy + Delta-G solvation = -17317.100792 eV Core-core repulsion = 14080.351071 eV Total energy + Delta-G solvation = -3236.749721 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 260.040 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.02108 -41.28957 -39.22952 -37.62053 -37.34319 -35.19564 -32.50696 -31.01989 -28.83856 -27.61070 -25.33360 -23.87136 -22.58504 -19.94505 -18.61689 -18.55374 -18.33453 -17.88734 -16.84197 -16.44482 -16.36004 -15.98647 -15.54056 -15.50413 -14.58401 -14.37734 -14.31407 -13.78617 -13.33445 -13.31435 -12.83405 -12.68556 -12.45233 -12.31199 -12.16468 -11.84638 -11.70528 -11.42472 -10.93333 -10.55801 -9.77444 -9.46801 -8.18432 -6.28392 -0.25243 -0.15361 0.88852 1.42526 1.43597 1.54389 2.07272 2.44074 2.54691 2.98534 3.14375 3.23148 3.73031 3.91665 4.16839 4.37026 4.44632 4.48927 4.66650 4.76600 4.92509 4.95465 5.31198 5.43949 5.65516 5.74854 6.14710 6.43726 6.55279 6.80203 7.38721 8.91405 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.021511 B = 0.007229 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.349976 B = 3872.290707 C = 4552.256327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.332 6.332 3 C 0.103 3.897 4 C -0.047 4.047 5 C 0.065 3.935 6 C -0.519 4.519 7 H 0.051 0.949 8 C 0.012 3.988 9 N -0.926 5.926 10 Si 0.958 3.042 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.270 1.270 14 C -0.126 4.126 15 C 0.082 3.918 16 F -0.127 7.127 17 C 0.084 3.916 18 O -0.477 6.477 19 C -0.063 4.063 20 Cl -0.030 7.030 21 H 0.041 0.959 22 H 0.059 0.941 23 H 0.112 0.888 24 H 0.021 0.979 25 H 0.017 0.983 26 H 0.265 0.735 27 H 0.154 0.846 28 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.356 4.860 -12.404 13.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.248 6.248 3 C 0.058 3.942 4 C -0.048 4.048 5 C 0.028 3.972 6 C -0.557 4.557 7 H 0.070 0.930 8 C -0.186 4.186 9 N -0.566 5.566 10 Si 0.783 3.217 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.194 1.194 14 C -0.144 4.144 15 C 0.062 3.938 16 F -0.105 7.105 17 C 0.037 3.963 18 O -0.290 6.290 19 C -0.091 4.091 20 Cl 0.000 7.000 21 H 0.060 0.940 22 H 0.078 0.922 23 H 0.130 0.870 24 H 0.039 0.961 25 H 0.035 0.965 26 H 0.074 0.926 27 H 0.171 0.829 28 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -0.205 4.845 -12.349 13.267 hybrid contribution 0.880 -0.557 0.392 1.113 sum 0.676 4.288 -11.957 12.721 Atomic orbital electron populations 1.23148 0.77468 1.04699 1.00714 1.86082 1.21287 1.23427 1.94024 1.18229 0.98967 0.87162 0.89830 1.20615 0.95243 0.92643 0.96331 1.18045 0.96873 0.94558 0.87727 1.21206 1.05616 1.22722 1.06169 0.93039 1.25735 0.98054 0.98604 0.96220 1.70040 1.30311 1.42554 1.13695 0.85550 0.79244 0.78598 0.78307 1.19706 1.20664 1.19440 1.21071 1.00103 0.95405 0.97871 1.17713 0.99517 0.83489 0.93100 1.91491 1.80134 1.41642 1.97261 1.17580 1.02350 0.90772 0.85647 1.84837 1.41446 1.68830 1.33854 1.21449 1.05863 0.93690 0.88107 1.98342 1.92213 1.80379 1.29105 0.94050 0.92228 0.86990 0.96055 0.96473 0.92600 0.82868 0.72933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 10.80 113.37 1.22 2.25 15 2 O -0.33 -12.97 9.14 -93.20 -0.85 -13.82 15 3 C 0.10 3.95 5.69 22.50 0.13 4.08 15 4 C -0.05 -1.95 5.08 -19.76 -0.10 -2.05 15 5 C 0.06 3.22 4.82 29.10 0.14 3.36 15 6 C -0.52 -28.32 9.09 25.60 0.23 -28.09 15 7 H 0.05 2.81 7.74 -2.91 -0.02 2.79 15 8 C 0.01 0.68 5.46 84.66 0.46 1.15 15 9 N -0.93 -53.37 13.29 21.45 0.28 -53.09 15 10 Si 0.96 43.27 29.54 68.60 2.03 45.30 15 11 H -0.27 -11.83 7.11 99.48 0.71 -11.13 15 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 13 H -0.27 -11.97 7.11 99.48 0.71 -11.27 15 14 C -0.13 -4.50 9.65 22.29 0.22 -4.28 15 15 C 0.08 2.62 7.31 22.45 0.16 2.78 15 16 F -0.13 -3.85 17.11 44.97 0.77 -3.08 15 17 C 0.08 2.53 6.70 22.53 0.15 2.68 15 18 O -0.48 -11.76 12.82 -93.33 -1.20 -12.96 15 19 C -0.06 -2.06 6.34 22.49 0.14 -1.91 15 20 Cl -0.03 -0.83 28.04 -2.72 -0.08 -0.91 15 21 H 0.04 1.35 7.17 -2.39 -0.02 1.33 15 22 H 0.06 1.57 8.14 -2.38 -0.02 1.56 15 23 H 0.11 2.97 8.14 -2.39 -0.02 2.95 15 24 H 0.02 1.12 6.42 -2.39 -0.02 1.10 15 25 H 0.02 0.88 8.05 -2.39 -0.02 0.86 15 26 H 0.27 14.42 8.31 -92.71 -0.77 13.65 15 27 H 0.15 5.19 8.06 -2.91 -0.02 5.17 15 28 H 0.41 6.25 9.06 -74.06 -0.67 5.58 15 Total: -1.00 -61.95 273.29 4.26 -57.69 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: 0.54 Total: 0.90 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 2.76 Total: -20.04 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.28 Total: -53.09 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -2.05 Total: -26.78 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.77 Total: -3.08 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -61.95 4.26 -57.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216629928.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.298 kcal (2) G-P(sol) polarization free energy of solvation -61.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds