Wall clock time and date at job start Mon Mar 30 2020 07:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35976 * 116.99970 * 2 1 4 4 C 1.38935 * 120.03670 * 89.99885 * 3 2 1 5 5 F 1.35101 * 119.98994 * 0.02562 * 4 3 2 6 6 C 1.38303 * 120.02350 * 180.02562 * 4 3 2 7 7 C 1.38268 * 120.09777 * 0.02562 * 6 4 3 8 8 C 1.50699 * 119.96159 * 179.97438 * 7 6 4 9 9 C 1.50706 * 109.46817 * 264.99879 * 8 7 6 10 10 H 1.07995 * 120.00167 * 359.72198 * 9 8 7 11 11 C 1.37879 * 119.99394 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99350 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00608 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47353 * 89.99430 * 13 11 9 15 15 H 1.48494 * 109.47031 * 209.99977 * 13 11 9 16 16 H 1.48504 * 109.46680 * 329.99678 * 13 11 9 17 17 C 1.38674 * 120.07490 * 0.26817 * 7 6 4 18 18 O 1.35962 * 120.00804 * 179.72779 * 17 7 6 19 19 C 1.38634 * 120.03993 * 270.02203 * 3 2 1 20 20 Cl 1.73603 * 120.04877 * 0.02562 * 19 3 2 21 21 H 1.09002 * 109.46665 * 60.00014 * 1 2 3 22 22 H 1.08996 * 109.47187 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47125 * 299.99968 * 1 2 3 24 24 H 1.07997 * 119.95054 * 180.02562 * 6 4 3 25 25 H 1.09000 * 109.47247 * 144.99942 * 8 7 6 26 26 H 1.09001 * 109.47358 * 24.99369 * 8 7 6 27 27 H 0.97005 * 119.99656 * 180.02562 * 12 11 9 28 28 H 0.96700 * 114.00391 * 90.00359 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 2.3621 1.8312 1.2028 5 9 2.0561 1.2296 2.3731 6 6 2.9894 3.0637 1.2024 7 6 3.3032 3.6818 0.0060 8 6 3.9863 5.0251 0.0093 9 6 2.9523 6.1147 -0.1129 10 1 1.9057 5.8597 -0.1902 11 6 3.3431 7.4368 -0.1313 12 7 2.4409 8.3876 -0.2385 13 14 5.1540 7.8775 -0.0056 14 1 5.7435 7.9423 -1.3670 15 1 5.2972 9.1975 0.6593 16 1 5.8610 6.8427 0.7911 17 6 2.9845 3.0698 -1.1968 18 8 3.2886 3.6813 -2.3725 19 6 2.3610 1.8301 -1.2001 20 17 1.9669 1.0594 -2.7049 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 3.2347 3.5442 2.1381 25 1 4.6769 5.0835 -0.8320 26 1 4.5375 5.1502 0.9413 27 1 2.7158 9.3178 -0.2518 28 1 4.1638 3.4575 -2.7174 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216630001.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:22 Heat of formation + Delta-G solvation = -107.681610 kcal Electronic energy + Delta-G solvation = -17238.564178 eV Core-core repulsion = 14002.825170 eV Total energy + Delta-G solvation = -3235.739007 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 260.040 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.73226 -39.93994 -38.20032 -36.36305 -35.80512 -33.28073 -31.29121 -29.34972 -28.03808 -26.36653 -23.23763 -22.70527 -20.82167 -18.58223 -17.33656 -17.24035 -16.90405 -16.34039 -15.85050 -14.90260 -14.81683 -14.58879 -14.30899 -14.11739 -13.47954 -13.04109 -12.54817 -12.23869 -12.08610 -11.83074 -11.69916 -11.11670 -11.07663 -10.69591 -10.61129 -10.14342 -10.07341 -9.97011 -9.47307 -8.65320 -8.44496 -8.06886 -6.13658 -4.13825 1.09962 1.12666 2.16172 3.23168 3.30849 3.31586 3.33778 3.72409 4.34112 4.37546 4.46322 5.06338 5.16900 5.18760 5.28821 5.37595 5.43377 5.59366 5.81430 5.96554 6.28856 6.34482 6.61935 6.84313 7.11200 7.37795 7.54811 7.93476 8.38978 8.89966 9.44333 10.99253 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.025916 B = 0.006685 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.155532 B = 4187.501139 C = 4777.664519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.320 6.320 3 C 0.054 3.946 4 C 0.086 3.914 5 F -0.131 7.131 6 C -0.127 4.127 7 C -0.019 4.019 8 C 0.023 3.977 9 C -0.510 4.510 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.896 5.896 13 Si 0.877 3.123 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.265 1.265 17 C 0.121 3.879 18 O -0.464 6.464 19 C -0.058 4.058 20 Cl -0.047 7.047 21 H 0.050 0.950 22 H 0.095 0.905 23 H 0.048 0.952 24 H 0.149 0.851 25 H 0.033 0.967 26 H 0.034 0.966 27 H 0.265 0.735 28 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.961 -14.466 -0.671 14.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.236 6.236 3 C 0.008 3.992 4 C 0.066 3.934 5 F -0.110 7.110 6 C -0.146 4.146 7 C -0.020 4.020 8 C -0.014 4.014 9 C -0.548 4.548 10 H 0.092 0.908 11 C -0.130 4.130 12 N -0.534 5.534 13 Si 0.704 3.296 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.190 1.190 17 C 0.074 3.926 18 O -0.273 6.273 19 C -0.086 4.086 20 Cl -0.018 7.018 21 H 0.068 0.932 22 H 0.114 0.886 23 H 0.066 0.934 24 H 0.167 0.833 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.398 -14.285 -0.722 14.309 hybrid contribution 0.953 0.180 0.020 0.970 sum 1.351 -14.106 -0.702 14.188 Atomic orbital electron populations 1.23060 0.78868 1.03251 1.01080 1.86092 1.20115 1.23305 1.94126 1.17940 1.02869 0.88725 0.89660 1.17791 1.02639 0.92643 0.80336 1.91478 1.91214 1.83121 1.45167 1.21045 1.00395 0.92911 1.00277 1.20554 0.94559 0.96901 0.89941 1.18763 0.96402 0.88220 0.98051 1.20755 0.94023 0.88768 1.51252 0.90777 1.24947 0.97436 0.96205 0.94393 1.69887 1.33458 1.00115 1.49932 0.86823 0.85813 0.78158 0.78779 1.20046 1.21175 1.18965 1.17879 0.99265 0.88520 0.86929 1.84994 1.38679 1.69051 1.34527 1.21508 1.05994 0.93922 0.87152 1.98342 1.92551 1.80613 1.30336 0.93158 0.88625 0.93361 0.83299 0.94897 0.94747 0.92466 0.75977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.13 101.05 1.12 1.51 15 2 O -0.32 -4.93 9.74 -19.66 -0.19 -5.13 15 3 C 0.05 0.90 5.72 -39.18 -0.22 0.67 15 4 C 0.09 1.45 7.31 -39.30 -0.29 1.16 15 5 F -0.13 -2.15 17.11 2.25 0.04 -2.11 15 6 C -0.13 -2.23 9.65 -39.55 -0.38 -2.61 15 7 C -0.02 -0.36 5.08 -104.45 -0.53 -0.89 15 8 C 0.02 0.50 3.88 -29.03 -0.11 0.38 15 9 C -0.51 -13.85 9.65 -34.44 -0.33 -14.19 15 10 H 0.07 2.25 7.98 -52.49 -0.42 1.83 15 11 C 0.07 2.01 5.47 -17.82 -0.10 1.92 15 12 N -0.90 -26.80 13.96 55.43 0.77 -26.03 15 13 Si 0.88 20.40 27.47 -169.99 -4.67 15.73 15 14 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 15 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 16 H -0.27 -5.78 6.54 56.52 0.37 -5.41 15 17 C 0.12 2.19 6.67 -39.23 -0.26 1.93 15 18 O -0.46 -8.16 12.09 -19.62 -0.24 -8.39 15 19 C -0.06 -0.97 6.34 -39.24 -0.25 -1.22 15 20 Cl -0.05 -0.71 28.04 -51.86 -1.45 -2.16 15 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 15 22 H 0.10 0.88 8.14 -51.93 -0.42 0.46 15 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 24 H 0.15 2.40 8.06 -52.49 -0.42 1.98 15 25 H 0.03 0.70 7.12 -51.93 -0.37 0.33 15 26 H 0.03 0.73 7.11 -51.93 -0.37 0.36 15 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 15 28 H 0.38 4.76 9.06 45.56 0.41 5.17 15 LS Contribution 272.14 15.07 4.10 4.10 Total: -1.00 -30.77 272.14 -4.59 -35.36 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -1.60 Total: -0.03 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -1.35 Total: -11.34 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.77 Total: -26.03 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.43 Total: -13.52 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.67 Total: 15.73 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.45 Total: -2.16 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.77 -4.59 -35.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216630001.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.318 kcal (2) G-P(sol) polarization free energy of solvation -30.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds