Wall clock time and date at job start Mon Mar 30 2020 07:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35976 * 116.99970 * 2 1 4 4 C 1.38935 * 120.03670 * 89.99885 * 3 2 1 5 5 F 1.35101 * 119.98994 * 0.02562 * 4 3 2 6 6 C 1.38303 * 120.02350 * 180.02562 * 4 3 2 7 7 C 1.38268 * 120.09777 * 0.02562 * 6 4 3 8 8 C 1.50699 * 119.96159 * 179.97438 * 7 6 4 9 9 C 1.50706 * 109.46817 * 264.99879 * 8 7 6 10 10 H 1.07995 * 120.00167 * 359.72198 * 9 8 7 11 11 C 1.37879 * 119.99394 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99350 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00608 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47353 * 89.99430 * 13 11 9 15 15 H 1.48494 * 109.47031 * 209.99977 * 13 11 9 16 16 H 1.48504 * 109.46680 * 329.99678 * 13 11 9 17 17 C 1.38674 * 120.07490 * 0.26817 * 7 6 4 18 18 O 1.35962 * 120.00804 * 179.72779 * 17 7 6 19 19 C 1.38634 * 120.03993 * 270.02203 * 3 2 1 20 20 Cl 1.73603 * 120.04877 * 0.02562 * 19 3 2 21 21 H 1.09002 * 109.46665 * 60.00014 * 1 2 3 22 22 H 1.08996 * 109.47187 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47125 * 299.99968 * 1 2 3 24 24 H 1.07997 * 119.95054 * 180.02562 * 6 4 3 25 25 H 1.09000 * 109.47247 * 144.99942 * 8 7 6 26 26 H 1.09001 * 109.47358 * 24.99369 * 8 7 6 27 27 H 0.97005 * 119.99656 * 180.02562 * 12 11 9 28 28 H 0.96700 * 114.00391 * 90.00359 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 2.3621 1.8312 1.2028 5 9 2.0561 1.2296 2.3731 6 6 2.9894 3.0637 1.2024 7 6 3.3032 3.6818 0.0060 8 6 3.9863 5.0251 0.0093 9 6 2.9523 6.1147 -0.1129 10 1 1.9057 5.8597 -0.1902 11 6 3.3431 7.4368 -0.1313 12 7 2.4409 8.3876 -0.2385 13 14 5.1540 7.8775 -0.0056 14 1 5.7435 7.9423 -1.3670 15 1 5.2972 9.1975 0.6593 16 1 5.8610 6.8427 0.7911 17 6 2.9845 3.0698 -1.1968 18 8 3.2886 3.6813 -2.3725 19 6 2.3610 1.8301 -1.2001 20 17 1.9669 1.0594 -2.7049 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 3.2347 3.5442 2.1381 25 1 4.6769 5.0835 -0.8320 26 1 4.5375 5.1502 0.9413 27 1 2.7158 9.3178 -0.2518 28 1 4.1638 3.4575 -2.7174 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216630001.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:22 Heat of formation + Delta-G solvation = -128.873664 kcal Electronic energy + Delta-G solvation = -17239.483134 eV Core-core repulsion = 14002.825170 eV Total energy + Delta-G solvation = -3236.657964 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 260.040 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.04152 -41.27076 -39.46547 -37.62603 -37.15950 -35.18811 -32.99609 -30.75248 -29.45562 -27.67207 -24.90399 -24.08793 -22.37858 -19.88155 -18.98632 -18.67362 -18.52028 -17.69849 -17.12148 -16.38370 -16.09654 -15.99310 -15.80124 -15.38318 -14.99390 -14.67414 -14.14458 -13.65712 -13.50708 -13.38617 -12.88605 -12.65791 -12.37503 -12.31245 -12.18713 -11.77619 -11.65162 -11.42407 -11.17012 -10.74837 -9.78838 -9.47276 -8.25401 -6.30850 -0.24698 -0.21799 0.87640 1.42198 1.43711 1.54295 2.02181 2.39203 2.46337 3.02998 3.11910 3.17178 3.67811 3.89114 4.10122 4.34484 4.37657 4.47152 4.63953 4.70104 4.80371 4.87404 5.03109 5.33901 5.49409 5.58416 6.16995 6.25696 6.73310 6.77962 7.31382 8.91477 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.025916 B = 0.006685 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.155532 B = 4187.501139 C = 4777.664519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.328 6.328 3 C 0.064 3.936 4 C 0.081 3.919 5 F -0.128 7.128 6 C -0.122 4.122 7 C -0.047 4.047 8 C 0.028 3.972 9 C -0.513 4.513 10 H 0.023 0.977 11 C 0.008 3.992 12 N -0.951 5.951 13 Si 0.951 3.049 14 H -0.266 1.266 15 H -0.289 1.289 16 H -0.236 1.236 17 C 0.123 3.877 18 O -0.481 6.481 19 C -0.065 4.065 20 Cl -0.030 7.030 21 H 0.049 0.951 22 H 0.128 0.872 23 H 0.049 0.951 24 H 0.160 0.840 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.266 0.734 28 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.316 -15.982 -0.608 16.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.245 6.245 3 C 0.018 3.982 4 C 0.061 3.939 5 F -0.106 7.106 6 C -0.141 4.141 7 C -0.048 4.048 8 C -0.009 4.009 9 C -0.550 4.550 10 H 0.042 0.958 11 C -0.189 4.189 12 N -0.592 5.592 13 Si 0.773 3.227 14 H -0.191 1.191 15 H -0.215 1.215 16 H -0.159 1.159 17 C 0.076 3.924 18 O -0.293 6.293 19 C -0.093 4.093 20 Cl -0.001 7.001 21 H 0.068 0.932 22 H 0.146 0.854 23 H 0.068 0.932 24 H 0.178 0.822 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 1.764 -15.842 -0.664 15.954 hybrid contribution 0.377 0.523 -0.051 0.647 sum 2.141 -15.319 -0.715 15.484 Atomic orbital electron populations 1.23328 0.76868 1.05504 1.01125 1.86068 1.21877 1.22475 1.94107 1.18037 1.01930 0.88712 0.89491 1.17740 1.02963 0.92603 0.80619 1.91484 1.91197 1.83001 1.44968 1.21124 0.99711 0.93058 1.00207 1.20371 0.96702 0.96535 0.91148 1.18593 0.95379 0.87903 0.98988 1.20994 0.93109 0.90667 1.50275 0.95815 1.25960 1.02916 0.95999 0.94022 1.70066 1.36339 1.00644 1.52144 0.85659 0.79268 0.78226 0.79501 1.19077 1.21478 1.15921 1.17913 0.98941 0.88795 0.86715 1.84925 1.40538 1.69435 1.34391 1.21469 1.05982 0.93792 0.88068 1.98344 1.92392 1.80173 1.29211 0.93215 0.85367 0.93238 0.82227 0.93567 0.93494 0.92467 0.73444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.13 113.37 1.26 1.81 15 2 O -0.33 -9.43 9.74 -93.28 -0.91 -10.34 15 3 C 0.06 2.04 5.72 22.53 0.13 2.17 15 4 C 0.08 2.62 7.31 22.45 0.16 2.78 15 5 F -0.13 -3.99 17.11 44.97 0.77 -3.22 15 6 C -0.12 -4.16 9.65 22.29 0.22 -3.95 15 7 C -0.05 -1.76 5.08 -19.75 -0.10 -1.86 15 8 C 0.03 1.22 3.88 29.10 0.11 1.33 15 9 C -0.51 -28.29 9.65 25.60 0.25 -28.05 15 10 H 0.02 1.50 7.98 -2.91 -0.02 1.47 15 11 C 0.01 0.44 5.47 84.66 0.46 0.90 15 12 N -0.95 -58.59 13.96 21.45 0.30 -58.29 15 13 Si 0.95 41.45 27.47 68.60 1.88 43.34 15 14 H -0.27 -11.14 7.11 99.48 0.71 -10.44 15 15 H -0.29 -12.64 7.11 99.48 0.71 -11.93 15 16 H -0.24 -9.13 6.54 99.48 0.65 -8.48 15 17 C 0.12 4.36 6.67 22.50 0.15 4.51 15 18 O -0.48 -16.43 12.09 -93.13 -1.13 -17.56 15 19 C -0.07 -2.11 6.34 22.49 0.14 -1.96 15 20 Cl -0.03 -0.86 28.04 -2.72 -0.08 -0.93 15 21 H 0.05 1.10 8.14 -2.39 -0.02 1.08 15 22 H 0.13 1.96 8.14 -2.39 -0.02 1.94 15 23 H 0.05 1.08 8.14 -2.39 -0.02 1.06 15 24 H 0.16 4.95 8.06 -2.91 -0.02 4.93 15 25 H 0.05 1.85 7.12 -2.39 -0.02 1.83 15 26 H 0.05 1.89 7.11 -2.39 -0.02 1.87 15 27 H 0.27 15.30 8.31 -92.70 -0.77 14.53 15 28 H 0.41 9.39 9.06 -74.06 -0.67 8.72 15 Total: -1.00 -66.83 272.14 4.11 -62.72 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 0.48 Total: 6.60 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: 2.79 Total: -22.31 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: 0.30 Total: -58.29 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -2.03 Total: -27.90 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.77 Total: -3.22 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 1.88 Total: 43.34 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.93 kcal Total: -66.83 4.11 -62.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216630001.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.158 kcal (2) G-P(sol) polarization free energy of solvation -66.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds