Wall clock time and date at job start Mon Mar 30 2020 07:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35964 * 116.99967 * 2 1 4 4 C 1.38820 * 120.02395 * 270.29480 * 3 2 1 5 5 F 1.35096 * 120.05988 * 359.97438 * 4 3 2 6 6 C 1.38722 * 119.87293 * 180.27148 * 4 3 2 7 7 O 1.35985 * 120.03876 * 179.70283 * 6 4 3 8 8 C 1.38837 * 119.92790 * 359.72766 * 6 4 3 9 9 Cl 1.73596 * 119.97678 * 179.97438 * 8 6 4 10 10 C 1.38256 * 120.04683 * 359.97438 * 8 6 4 11 11 C 1.38244 * 120.12294 * 0.02562 * 10 8 6 12 12 C 1.50699 * 119.96115 * 180.02562 * 11 10 8 13 13 C 1.50706 * 109.46817 * 265.00070 * 12 11 10 14 14 H 1.07995 * 120.00167 * 359.72198 * 13 12 11 15 15 C 1.37879 * 119.99394 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47474 * 90.00322 * 17 15 13 19 19 H 1.48507 * 109.46754 * 210.00056 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99887 * 17 15 13 21 21 H 1.09002 * 109.47265 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47440 * 300.00217 * 1 2 3 23 23 H 1.09002 * 109.47051 * 60.00062 * 1 2 3 24 24 H 0.96694 * 113.99884 * 270.02875 * 7 6 4 25 25 H 1.07999 * 119.93600 * 180.02562 * 10 8 6 26 26 H 1.09000 * 109.47247 * 145.00133 * 12 11 10 27 27 H 1.09001 * 109.47358 * 24.99560 * 12 11 10 28 28 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 2.3561 1.8332 -1.2019 5 9 2.0453 1.2353 -2.3728 6 6 2.9910 3.0666 -1.1983 7 8 3.3015 3.6758 -2.3737 8 6 3.3095 3.6781 0.0067 9 17 4.1046 5.2213 0.0128 10 6 2.9939 3.0590 1.2020 11 6 2.3612 1.8298 1.2007 12 6 2.0184 1.1585 2.5056 13 6 3.1136 0.1916 2.8760 14 1 3.9697 0.0717 2.2287 15 6 3.0198 -0.5436 4.0386 16 7 1.9746 -0.4015 4.8241 17 14 4.3776 -1.7414 4.4980 18 1 5.3995 -1.0411 5.3169 19 1 3.8023 -2.8655 5.2797 20 1 5.0102 -2.2701 3.2629 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 4.1765 3.4474 -2.7159 25 1 3.2421 3.5365 2.1383 26 1 1.0774 0.6186 2.4003 27 1 1.9196 1.9120 3.2870 28 1 1.9086 -0.9191 5.6418 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216630071.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:51 Heat of formation + Delta-G solvation = -132.092315 kcal Electronic energy + Delta-G solvation = -17323.575062 eV Core-core repulsion = 14086.777527 eV Total energy + Delta-G solvation = -3236.797535 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 260.040 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.05721 -41.19228 -39.44658 -37.70766 -37.23553 -35.19984 -32.46356 -31.10861 -28.83743 -27.71840 -25.30963 -23.82504 -22.65086 -19.96240 -18.75143 -18.54666 -18.24311 -17.91125 -17.00556 -16.58325 -16.32218 -16.04708 -15.64463 -15.25762 -14.68233 -14.43108 -14.14448 -13.93483 -13.39777 -13.30857 -12.86770 -12.67630 -12.56261 -12.28441 -12.07051 -11.88407 -11.67722 -11.41532 -11.00943 -10.56115 -9.74664 -9.53169 -8.18709 -6.28681 -0.29392 -0.14058 0.89363 1.42426 1.43497 1.54225 2.06752 2.43424 2.49029 2.95183 3.13780 3.20316 3.69036 3.89677 4.23104 4.31722 4.40800 4.46816 4.69541 4.75776 4.88542 4.92531 5.25311 5.39715 5.65237 5.74644 6.14309 6.38579 6.54799 6.79819 7.38427 8.91150 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.020204 B = 0.007215 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.534167 B = 3880.118663 C = 4696.100180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.338 6.338 3 C 0.072 3.928 4 C 0.056 3.944 5 F -0.127 7.127 6 C 0.085 3.915 7 O -0.477 6.477 8 C -0.036 4.036 9 Cl -0.032 7.032 10 C -0.093 4.093 11 C -0.047 4.047 12 C 0.064 3.936 13 C -0.520 4.520 14 H 0.051 0.949 15 C 0.013 3.987 16 N -0.926 5.926 17 Si 0.958 3.042 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.271 1.271 21 H 0.113 0.887 22 H 0.044 0.956 23 H 0.058 0.942 24 H 0.412 0.588 25 H 0.154 0.846 26 H 0.019 0.981 27 H 0.020 0.980 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.526 7.160 -10.871 13.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.255 6.255 3 C 0.026 3.974 4 C 0.035 3.965 5 F -0.105 7.105 6 C 0.038 3.962 7 O -0.289 6.289 8 C -0.064 4.064 9 Cl -0.003 7.003 10 C -0.111 4.111 11 C -0.048 4.048 12 C 0.028 3.972 13 C -0.558 4.558 14 H 0.069 0.931 15 C -0.186 4.186 16 N -0.566 5.566 17 Si 0.783 3.217 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.195 1.195 21 H 0.132 0.868 22 H 0.063 0.937 23 H 0.077 0.923 24 H 0.271 0.729 25 H 0.172 0.828 26 H 0.037 0.963 27 H 0.038 0.962 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.039 7.289 -10.723 13.007 hybrid contribution 0.743 -0.817 0.213 1.125 sum 1.782 6.472 -10.510 12.471 Atomic orbital electron populations 1.23191 0.77286 1.04851 1.00816 1.86080 1.21604 1.23688 1.94094 1.18587 1.00538 0.87734 0.90508 1.18199 1.05187 0.92021 0.81048 1.91456 1.91089 1.83043 1.44918 1.17578 1.02187 0.90127 0.86294 1.84837 1.41488 1.68568 1.34045 1.21005 1.01731 0.90624 0.93030 1.98359 1.77691 1.25423 1.98815 1.20969 0.98206 0.94199 0.97776 1.20656 0.95236 0.92914 0.95962 1.18048 0.96775 0.94637 0.87773 1.21207 1.05625 1.22797 1.06161 0.93068 1.25734 0.98062 0.98586 0.96217 1.70038 1.30270 1.42554 1.13697 0.85550 0.79270 0.78596 0.78283 1.19537 1.20694 1.19550 0.86848 0.93682 0.92348 0.72898 0.82824 0.96277 0.96153 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 10.80 113.37 1.22 2.26 15 2 O -0.34 -13.90 9.55 -93.15 -0.89 -14.79 15 3 C 0.07 2.83 5.70 22.52 0.13 2.96 15 4 C 0.06 1.94 7.32 22.53 0.16 2.11 15 5 F -0.13 -4.30 16.95 44.97 0.76 -3.53 15 6 C 0.09 2.58 6.70 22.53 0.15 2.73 15 7 O -0.48 -11.74 12.82 -93.38 -1.20 -12.94 15 8 C -0.04 -1.10 6.33 22.42 0.14 -0.96 15 9 Cl -0.03 -0.81 28.50 -2.72 -0.08 -0.89 15 10 C -0.09 -3.23 9.45 22.28 0.21 -3.02 15 11 C -0.05 -1.93 5.08 -19.76 -0.10 -2.03 15 12 C 0.06 3.20 4.82 29.10 0.14 3.34 15 13 C -0.52 -28.42 9.09 25.60 0.23 -28.18 15 14 H 0.05 2.80 7.74 -2.91 -0.02 2.78 15 15 C 0.01 0.69 5.46 84.66 0.46 1.16 15 16 N -0.93 -53.33 13.29 21.45 0.28 -53.05 15 17 Si 0.96 43.30 29.54 68.60 2.03 45.32 15 18 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 20 H -0.27 -12.06 7.11 99.48 0.71 -11.36 15 21 H 0.11 3.12 8.14 -2.39 -0.02 3.10 15 22 H 0.04 1.50 7.17 -2.38 -0.02 1.49 15 23 H 0.06 1.62 8.14 -2.39 -0.02 1.60 15 24 H 0.41 6.24 9.06 -74.06 -0.67 5.57 15 25 H 0.15 5.04 8.06 -2.91 -0.02 5.02 15 26 H 0.02 1.01 6.42 -2.39 -0.02 0.99 15 27 H 0.02 1.04 8.05 -2.39 -0.02 1.02 15 28 H 0.27 14.42 8.31 -92.71 -0.77 13.65 15 Total: -1.00 -62.61 273.80 4.21 -58.40 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: 0.54 Total: 1.11 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 2.76 Total: -19.64 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.28 Total: -53.05 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -2.09 Total: -27.73 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.76 Total: -3.53 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -62.61 4.21 -58.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216630071.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.688 kcal (2) G-P(sol) polarization free energy of solvation -62.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds