Wall clock time and date at job start Mon Mar 30 2020 07:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35980 * 116.99715 * 2 1 4 4 C 1.38834 * 120.03792 * 90.00323 * 3 2 1 5 5 Cl 1.73601 * 119.97417 * 359.97438 * 4 3 2 6 6 C 1.38256 * 120.04979 * 180.02562 * 4 3 2 7 7 C 1.38244 * 120.12294 * 359.97438 * 6 4 3 8 8 C 1.50699 * 119.96115 * 180.02562 * 7 6 4 9 9 C 1.50706 * 109.46817 * 265.00070 * 8 7 6 10 10 H 1.07995 * 120.00167 * 359.72198 * 9 8 7 11 11 C 1.37879 * 119.99394 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47487 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47233 * 120.00158 * 13 11 9 16 16 H 1.48508 * 109.46883 * 239.99963 * 13 11 9 17 17 C 1.38674 * 120.07533 * 0.27558 * 7 6 4 18 18 O 1.35979 * 120.02508 * 179.70702 * 17 7 6 19 19 C 1.38729 * 120.04163 * 270.02924 * 3 2 1 20 20 F 1.35103 * 120.05976 * 359.97311 * 19 3 2 21 21 H 1.09001 * 109.47108 * 299.99425 * 1 2 3 22 22 H 1.09001 * 109.47521 * 59.99778 * 1 2 3 23 23 H 1.09000 * 109.46834 * 179.97438 * 1 2 3 24 24 H 1.07999 * 119.93600 * 180.02562 * 6 4 3 25 25 H 1.09000 * 109.47247 * 145.00133 * 8 7 6 26 26 H 1.09001 * 109.47358 * 24.99560 * 8 7 6 27 27 H 0.96996 * 119.99730 * 179.97438 * 12 11 9 28 28 H 0.96702 * 113.99715 * 90.00157 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 2.3618 1.8308 1.2019 5 17 1.9674 1.0580 2.7055 6 6 2.9890 3.0630 1.2022 7 6 3.3040 3.6814 0.0066 8 6 3.9880 5.0242 0.0111 9 6 2.9550 6.1146 -0.1111 10 1 1.9082 5.8605 -0.1892 11 6 3.3467 7.4365 -0.1284 12 7 4.6219 7.7457 -0.0387 13 14 2.0662 8.7881 -0.2791 14 1 0.7136 8.1813 -0.3647 15 1 2.1379 9.6730 0.9113 16 1 2.3292 9.5847 -1.5046 17 6 2.9865 3.0699 -1.1969 18 8 3.2914 3.6819 -2.3723 19 6 2.3610 1.8307 -1.2009 20 9 2.0553 1.2307 -2.3721 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 3.2339 3.5428 2.1382 25 1 4.6793 5.0827 -0.8296 26 1 4.5387 5.1483 0.9436 27 1 4.8974 8.6756 -0.0513 28 1 4.1670 3.4584 -2.7165 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216630146.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:47 Heat of formation + Delta-G solvation = -113.381651 kcal Electronic energy + Delta-G solvation = -17218.279381 eV Core-core repulsion = 13982.293201 eV Total energy + Delta-G solvation = -3235.986180 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 260.040 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.66835 -39.79413 -38.18643 -36.57544 -35.59791 -33.32715 -30.96913 -29.32059 -27.78913 -26.17564 -23.42994 -22.61451 -21.00249 -18.53262 -17.40999 -16.99754 -16.52088 -16.38678 -15.79941 -14.99940 -14.81033 -14.40426 -14.37830 -14.07099 -13.32578 -12.79903 -12.47984 -12.26954 -12.09162 -11.83395 -11.40694 -11.08660 -10.89798 -10.64532 -10.59474 -10.41935 -9.98452 -9.75149 -9.51574 -8.50838 -8.34315 -8.07801 -6.13161 -4.16336 1.12450 1.21533 2.18209 3.26283 3.33495 3.36725 3.43131 3.75250 4.33160 4.39615 4.62016 5.13291 5.20457 5.23668 5.29376 5.40563 5.50946 5.63901 5.85915 6.10046 6.39139 6.48030 6.76373 7.32902 7.40916 7.47783 7.81620 7.98421 8.16371 8.86238 9.47515 10.97072 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.023417 B = 0.006498 C = 0.005775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.408615 B = 4307.884318 C = 4847.571038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.319 6.319 3 C 0.050 3.950 4 C -0.034 4.034 5 Cl -0.059 7.059 6 C -0.099 4.099 7 C -0.023 4.023 8 C 0.055 3.945 9 C -0.507 4.507 10 H 0.058 0.942 11 C 0.061 3.939 12 N -0.893 5.893 13 Si 0.897 3.103 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.089 3.911 18 O -0.467 6.467 19 C 0.064 3.936 20 F -0.127 7.127 21 H 0.049 0.951 22 H 0.046 0.954 23 H 0.095 0.905 24 H 0.147 0.853 25 H 0.039 0.961 26 H 0.036 0.964 27 H 0.263 0.737 28 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.107 -12.571 1.193 13.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.236 6.236 3 C 0.004 3.996 4 C -0.061 4.061 5 Cl -0.030 7.030 6 C -0.118 4.118 7 C -0.024 4.024 8 C 0.019 3.981 9 C -0.545 4.545 10 H 0.076 0.924 11 C -0.141 4.141 12 N -0.532 5.532 13 Si 0.725 3.275 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.209 1.209 17 C 0.042 3.958 18 O -0.276 6.276 19 C 0.043 3.957 20 F -0.106 7.106 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.113 0.887 24 H 0.165 0.835 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -4.521 -12.445 1.334 13.308 hybrid contribution -0.487 0.569 -0.288 0.802 sum -5.009 -11.877 1.046 12.932 Atomic orbital electron populations 1.23049 0.79046 1.03189 1.00959 1.86099 1.19999 1.23377 1.94117 1.17929 1.03228 0.88801 0.89635 1.21055 1.04126 0.94817 0.86087 1.98342 1.92726 1.81108 1.30867 1.20961 0.98908 0.92182 0.99781 1.21040 0.93910 0.97794 0.89684 1.18336 0.95572 0.85131 0.99081 1.20946 0.92908 0.89875 1.50773 0.92391 1.24956 0.95441 0.98716 0.94974 1.69944 1.14599 1.18467 1.50196 0.86442 0.81697 0.81662 0.77709 1.19659 1.20899 1.20862 1.18232 1.00902 0.89163 0.87504 1.84964 1.38857 1.69135 1.34634 1.18266 1.04687 0.91860 0.80853 1.91460 1.91177 1.82978 1.44986 0.93202 0.93487 0.88684 0.83506 0.94315 0.94541 0.92764 0.75792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.13 101.05 1.12 1.51 15 2 O -0.32 -5.01 9.74 -19.68 -0.19 -5.20 15 3 C 0.05 0.84 5.72 -39.18 -0.22 0.62 15 4 C -0.03 -0.56 6.33 -39.35 -0.25 -0.81 15 5 Cl -0.06 -0.85 28.50 -51.86 -1.48 -2.33 15 6 C -0.10 -1.77 9.45 -39.57 -0.37 -2.14 15 7 C -0.02 -0.47 5.08 -104.46 -0.53 -1.00 15 8 C 0.06 1.32 4.82 -29.03 -0.14 1.18 15 9 C -0.51 -13.60 9.09 -34.44 -0.31 -13.92 15 10 H 0.06 1.58 7.74 -52.49 -0.41 1.17 15 11 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 12 N -0.89 -25.31 13.29 55.43 0.74 -24.57 15 13 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 15 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 17 C 0.09 1.69 6.68 -39.21 -0.26 1.43 15 18 O -0.47 -8.75 12.50 -19.67 -0.25 -9.00 15 19 C 0.06 1.15 7.32 -39.19 -0.29 0.86 15 20 F -0.13 -2.26 16.95 2.25 0.04 -2.22 15 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 15 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 23 H 0.09 0.89 8.14 -51.93 -0.42 0.46 15 24 H 0.15 2.45 8.06 -52.49 -0.42 2.03 15 25 H 0.04 0.96 7.69 -51.93 -0.40 0.56 15 26 H 0.04 0.89 8.05 -51.93 -0.42 0.47 15 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 28 H 0.39 5.27 9.06 45.56 0.41 5.69 15 LS Contribution 276.25 15.07 4.16 4.16 Total: -1.00 -29.71 276.25 -4.99 -34.70 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -1.64 Total: -0.96 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -1.35 Total: -10.70 kcal Atomic # 7 Polarization: -25.31 SS G_CDS: 0.74 Total: -24.57 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.44 Total: -14.20 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.48 Total: -2.33 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.71 -4.99 -34.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216630146.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.683 kcal (2) G-P(sol) polarization free energy of solvation -29.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds