Wall clock time and date at job start Mon Mar 30 2020 07:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35760 * 117.00060 * 2 1 4 4 C 1.39122 * 119.78411 * 269.98454 * 3 2 1 5 5 F 1.35096 * 120.01112 * 0.04133 * 4 3 2 6 6 C 1.38274 * 119.97835 * 180.02562 * 4 3 2 7 7 O 1.35738 * 120.22044 * 180.27497 * 6 4 3 8 8 C 1.42904 * 117.00146 * 269.71908 * 7 6 4 9 9 C 1.41407 * 119.55838 * 359.97438 * 6 4 3 10 10 C 1.41016 * 120.21319 * 179.97438 * 9 6 4 11 11 H 1.08004 * 120.00282 * 24.87795 * 10 9 6 12 12 C 1.39856 * 119.99873 * 204.88039 * 10 9 6 13 13 N 1.30937 * 120.00300 * 17.78537 * 12 10 9 14 14 Si 1.86802 * 120.00031 * 197.78049 * 12 10 9 15 15 H 1.48503 * 109.47156 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47075 * 119.99722 * 14 12 10 17 17 H 1.48500 * 109.47347 * 240.00122 * 14 12 10 18 18 C 1.40806 * 119.57335 * 359.97438 * 9 6 4 19 19 C 1.36429 * 120.01024 * 0.02562 * 18 9 6 20 20 Cl 1.73599 * 119.77478 * 179.97438 * 19 18 9 21 21 H 1.08998 * 109.47635 * 59.99581 * 1 2 3 22 22 H 1.08997 * 109.47119 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46672 * 299.99634 * 1 2 3 24 24 H 1.09001 * 109.46943 * 60.00160 * 8 7 6 25 25 H 1.08995 * 109.46999 * 179.97438 * 8 7 6 26 26 H 1.08997 * 109.46884 * 300.00384 * 8 7 6 27 27 H 0.97003 * 120.00032 * 179.97438 * 13 12 10 28 28 H 1.08000 * 119.99407 * 179.97438 * 18 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 2.3594 1.8252 -1.2074 5 9 2.0503 1.2199 -2.3750 6 6 2.9876 3.0570 -1.2121 7 8 3.2912 3.6646 -2.3873 8 6 4.5731 3.3813 -2.9520 9 6 3.3059 3.6824 0.0155 10 6 3.9471 4.9383 0.0269 11 1 3.8458 5.6040 -0.8176 12 6 4.7141 5.3219 1.1316 13 7 5.1287 4.4202 1.9857 14 14 5.1473 7.1207 1.3887 15 1 4.5624 7.9325 0.2914 16 1 4.5996 7.5806 2.6901 17 1 6.6239 7.2791 1.3893 18 6 2.9785 3.0430 1.2266 19 6 2.3587 1.8278 1.2108 20 17 1.9585 1.0446 2.7075 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 4.6567 2.3118 -3.1451 25 1 4.6871 3.9290 -3.8874 26 1 5.3529 3.6866 -2.2543 27 1 5.6611 4.6862 2.7517 28 1 3.2188 3.5143 2.1681 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216630472.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:49 Heat of formation + Delta-G solvation = -128.345893 kcal Electronic energy + Delta-G solvation = -17641.827418 eV Core-core repulsion = 14405.192340 eV Total energy + Delta-G solvation = -3236.635078 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 260.040 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.75568 -40.52206 -39.27189 -37.64837 -37.02545 -35.32006 -31.35091 -30.60993 -28.48283 -27.62048 -26.34068 -23.36804 -22.92764 -19.80023 -19.03711 -18.32845 -17.54470 -17.20356 -17.04694 -16.60211 -16.07083 -15.69388 -15.55267 -15.29194 -15.04395 -14.48309 -13.92141 -13.55859 -13.40584 -13.13609 -12.98166 -12.78331 -12.52764 -12.26669 -12.04519 -11.76212 -11.66799 -11.09200 -10.90152 -10.59665 -9.47732 -9.33774 -8.88436 -6.57540 0.31762 0.43620 1.26943 1.40303 1.44683 1.57639 2.14685 2.27863 2.85176 3.02734 3.48777 3.56478 4.38016 4.47222 4.48273 4.55623 4.64381 4.68237 4.73892 4.78949 4.97816 5.01244 5.13975 5.26461 5.53304 5.78889 6.14976 6.41876 6.58903 6.65805 6.95739 8.05822 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.019866 B = 0.009228 C = 0.006621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.109609 B = 3033.434722 C = 4227.657722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.329 6.329 3 C -0.076 4.076 4 C 0.101 3.899 5 F -0.146 7.146 6 C -0.073 4.073 7 O -0.331 6.331 8 C 0.031 3.969 9 C 0.096 3.904 10 C -0.435 4.435 11 H 0.093 0.907 12 C 0.039 3.961 13 N -0.791 5.791 14 Si 0.990 3.010 15 H -0.255 1.255 16 H -0.259 1.259 17 H -0.261 1.261 18 C -0.158 4.158 19 C 0.001 3.999 20 Cl -0.072 7.072 21 H 0.035 0.965 22 H 0.114 0.886 23 H 0.043 0.957 24 H 0.031 0.969 25 H 0.113 0.887 26 H 0.038 0.962 27 H 0.302 0.698 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.790 0.146 -0.118 1.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.245 6.245 3 C -0.123 4.123 4 C 0.080 3.920 5 F -0.124 7.124 6 C -0.119 4.119 7 O -0.248 6.248 8 C -0.063 4.063 9 C 0.092 3.908 10 C -0.461 4.461 11 H 0.111 0.889 12 C -0.182 4.182 13 N -0.414 5.414 14 Si 0.809 3.191 15 H -0.179 1.179 16 H -0.184 1.184 17 H -0.186 1.186 18 C -0.178 4.178 19 C -0.026 4.026 20 Cl -0.043 7.043 21 H 0.053 0.947 22 H 0.133 0.867 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.131 0.869 26 H 0.057 0.943 27 H 0.113 0.887 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.711 -0.058 0.083 1.714 hybrid contribution 0.174 0.224 0.119 0.307 sum -1.537 0.166 0.201 1.559 Atomic orbital electron populations 1.23181 0.79854 1.03915 1.00038 1.86046 1.20375 1.24025 1.94093 1.17527 1.13246 0.92305 0.89186 1.18106 1.02397 0.91135 0.80316 1.91335 1.91330 1.83264 1.46498 1.18478 1.13119 0.93190 0.87144 1.85949 1.35435 1.68745 1.34665 1.23035 0.84735 0.99904 0.98639 1.17845 0.90422 0.93467 0.89082 1.19846 1.23428 0.99750 1.03110 0.88899 1.26951 0.93100 1.04702 0.93413 1.69852 1.23177 1.37679 1.10673 0.85015 0.78985 0.75279 0.79818 1.17869 1.18352 1.18596 1.20866 1.02979 0.94474 0.99521 1.20612 1.02436 0.94230 0.85353 1.98265 1.92780 1.81002 1.32233 0.94652 0.86730 0.93819 0.95016 0.86853 0.94343 0.88656 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.81 11.13 113.37 1.26 2.07 15 2 O -0.33 -14.01 9.70 -90.87 -0.88 -14.89 15 3 C -0.08 -3.57 5.74 22.79 0.13 -3.44 15 4 C 0.10 4.91 7.31 22.49 0.16 5.07 15 5 F -0.15 -6.82 16.94 44.97 0.76 -6.06 15 6 C -0.07 -3.64 5.76 23.06 0.13 -3.51 15 7 O -0.33 -15.42 9.56 -90.62 -0.87 -16.28 15 8 C 0.03 1.18 11.13 113.37 1.26 2.44 15 9 C 0.10 4.86 5.58 -21.19 -0.12 4.74 15 10 C -0.44 -20.97 8.71 23.34 0.20 -20.77 15 11 H 0.09 4.43 7.65 -2.91 -0.02 4.40 15 12 C 0.04 1.69 5.13 85.22 0.44 2.13 15 13 N -0.79 -36.03 10.97 21.82 0.24 -35.79 15 14 Si 0.99 33.08 29.60 68.60 2.03 35.11 15 15 H -0.26 -8.50 7.11 99.48 0.71 -7.80 15 16 H -0.26 -8.32 7.11 99.48 0.71 -7.61 15 17 H -0.26 -8.35 7.11 99.48 0.71 -7.65 15 18 C -0.16 -7.74 8.38 22.48 0.19 -7.55 15 19 C 0.00 0.05 6.29 22.15 0.14 0.19 15 20 Cl -0.07 -2.83 28.46 -2.72 -0.08 -2.90 15 21 H 0.03 1.16 8.14 -2.39 -0.02 1.14 15 22 H 0.11 2.96 8.14 -2.39 -0.02 2.94 15 23 H 0.04 1.40 8.14 -2.38 -0.02 1.38 15 24 H 0.03 1.17 8.14 -2.39 -0.02 1.15 15 25 H 0.11 3.36 8.14 -2.39 -0.02 3.34 15 26 H 0.04 1.49 8.14 -2.39 -0.02 1.48 15 27 H 0.30 12.16 8.30 -92.71 -0.77 11.39 15 28 H 0.14 6.67 6.17 -2.91 -0.02 6.66 15 Total: -1.00 -54.82 272.66 6.20 -48.62 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 1.19 Total: 10.82 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: 3.80 Total: -18.63 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.24 Total: -35.79 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -1.75 Total: -31.17 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 0.76 Total: -6.06 kcal Atomic # 14 Polarization: 33.08 SS G_CDS: 2.03 Total: 35.11 kcal Atomic # 17 Polarization: -2.83 SS G_CDS: -0.08 Total: -2.90 kcal Total: -54.82 6.20 -48.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216630472.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.729 kcal (2) G-P(sol) polarization free energy of solvation -54.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds