Wall clock time and date at job start Mon Mar 30 2020 07:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35707 * 117.00106 * 2 1 4 4 C 1.39053 * 119.76183 * 359.97438 * 3 2 1 5 5 C 1.38027 * 120.19575 * 180.29924 * 4 3 2 6 6 O 1.35693 * 120.14005 * 179.72749 * 5 4 3 7 7 C 1.42893 * 117.00412 * 0.02562 * 6 5 4 8 8 C 1.41419 * 119.71105 * 359.46534 * 5 4 3 9 9 C 1.40976 * 120.23379 * 180.27508 * 8 5 4 10 10 H 1.08005 * 119.99736 * 316.68045 * 9 8 5 11 11 C 1.39847 * 120.00440 * 136.69222 * 9 8 5 12 12 N 1.30962 * 120.00468 * 160.53913 * 11 9 8 13 13 Si 1.86807 * 119.99554 * 340.53699 * 11 9 8 14 14 H 1.48498 * 109.47014 * 95.27784 * 13 11 9 15 15 H 1.48506 * 109.46781 * 215.27895 * 13 11 9 16 16 H 1.48499 * 109.47242 * 335.27540 * 13 11 9 17 17 C 1.41041 * 119.53331 * 0.53421 * 8 5 4 18 18 F 1.35099 * 120.10339 * 179.71484 * 17 8 5 19 19 C 1.37672 * 119.79433 * 359.73287 * 17 8 5 20 20 Cl 1.73600 * 119.85849 * 180.02562 * 19 17 8 21 21 H 1.08998 * 109.46892 * 60.00451 * 1 2 3 22 22 H 1.09002 * 109.47493 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47188 * 300.00320 * 1 2 3 24 24 H 1.08003 * 119.89699 * 0.02987 * 4 3 2 25 25 H 1.08996 * 109.47555 * 300.00023 * 7 6 5 26 26 H 1.09005 * 109.47352 * 60.00109 * 7 6 5 27 27 H 1.09001 * 109.47429 * 179.97438 * 7 6 5 28 28 H 0.96992 * 120.00129 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2830 2.3722 -0.0005 5 6 1.9003 3.6067 -0.0068 6 8 1.1554 4.7409 -0.0129 7 6 -0.2649 4.5844 -0.0119 8 6 3.3123 3.6843 -0.0012 9 6 3.9543 4.9394 -0.0016 10 1 3.5969 5.7285 -0.6467 11 6 5.0539 5.1628 0.8331 12 7 5.8775 6.1494 0.5813 13 14 5.3479 4.0537 2.3073 14 1 6.3043 2.9801 1.9360 15 1 5.9112 4.8541 3.4242 16 1 4.0620 3.4455 2.7334 17 6 4.0739 2.4972 -0.0007 18 9 5.4235 2.5579 -0.0011 19 6 3.4376 1.2763 -0.0001 20 17 4.3733 -0.1859 0.0012 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.2048 2.3093 -0.0005 25 1 -0.5699 4.0290 -0.8988 26 1 -0.5697 4.0387 0.8811 27 1 -0.7387 5.5660 -0.0167 28 1 6.6399 6.3045 1.1605 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216630603.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:18 Heat of formation + Delta-G solvation = -95.939094 kcal Electronic energy + Delta-G solvation = -17790.944116 eV Core-core repulsion = 14555.714303 eV Total energy + Delta-G solvation = -3235.229814 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 260.040 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.82219 -39.59773 -38.13114 -36.04510 -35.28066 -33.35503 -30.26451 -29.07295 -27.42307 -26.76489 -24.52230 -21.37492 -21.17190 -18.32793 -17.78041 -16.57764 -15.82605 -15.71461 -15.39659 -14.99528 -14.90953 -14.63671 -14.19945 -14.08343 -13.13423 -12.95394 -12.43955 -12.20785 -11.76358 -11.70002 -11.28616 -11.09079 -10.99162 -10.81761 -10.64844 -10.45313 -10.14082 -9.84455 -9.34649 -9.08487 -7.70571 -7.23386 -6.90346 -4.44547 1.98320 2.13806 2.92192 3.18647 3.25977 3.30182 3.73186 3.97259 4.04250 4.18388 4.94088 5.24390 5.37363 5.39164 5.42971 5.50036 5.65443 5.72826 5.76946 5.91366 6.01654 6.50378 6.70716 6.96770 7.13710 7.50324 7.81711 7.97086 8.29515 8.49396 8.69692 10.10539 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.011652 C = 0.007805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.012842 B = 2402.497418 C = 3586.669792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.311 6.311 3 C 0.074 3.926 4 C -0.258 4.258 5 C 0.106 3.894 6 O -0.293 6.293 7 C 0.028 3.972 8 C 0.032 3.968 9 C -0.438 4.438 10 H 0.102 0.898 11 C 0.092 3.908 12 N -0.801 5.801 13 Si 0.895 3.105 14 H -0.254 1.254 15 H -0.288 1.288 16 H -0.253 1.253 17 C 0.034 3.966 18 F -0.123 7.123 19 C -0.079 4.079 20 Cl -0.081 7.081 21 H 0.047 0.953 22 H 0.091 0.909 23 H 0.047 0.953 24 H 0.126 0.874 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.092 0.908 28 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.399 -6.582 0.594 11.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.225 6.225 3 C 0.029 3.971 4 C -0.278 4.278 5 C 0.060 3.940 6 O -0.206 6.206 7 C -0.067 4.067 8 C 0.028 3.972 9 C -0.466 4.466 10 H 0.120 0.880 11 C -0.127 4.127 12 N -0.426 5.426 13 Si 0.720 3.280 14 H -0.178 1.178 15 H -0.215 1.215 16 H -0.177 1.177 17 C 0.012 3.988 18 F -0.101 7.101 19 C -0.107 4.107 20 Cl -0.052 7.052 21 H 0.066 0.934 22 H 0.109 0.891 23 H 0.066 0.934 24 H 0.144 0.856 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.110 0.890 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.895 -6.493 0.619 11.031 hybrid contribution -0.010 -0.511 0.659 0.834 sum -8.906 -7.004 1.278 11.402 Atomic orbital electron populations 1.22862 0.79857 1.02746 1.00664 1.85972 1.19916 1.26507 1.90144 1.17464 0.88918 0.83901 1.06841 1.20804 0.99032 0.91525 1.16457 1.18736 0.90564 0.83777 1.00923 1.86099 1.16848 1.28925 1.88692 1.22922 0.80697 1.02787 1.00342 1.16832 0.88313 0.92862 0.99220 1.18915 1.09496 0.97139 1.21042 0.88049 1.26003 0.92944 0.95076 0.98720 1.69721 1.10010 1.27748 1.35082 0.86667 0.81231 0.80628 0.79468 1.17841 1.21463 1.17670 1.16755 0.77349 0.90948 1.13759 1.91290 1.28083 1.96635 1.94137 1.19685 0.88936 0.85995 1.16066 1.98278 1.73033 1.36395 1.97497 0.93392 0.89097 0.93438 0.85632 0.93595 0.93570 0.88984 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.80 101.05 0.99 1.43 15 2 O -0.31 -5.63 9.92 -18.83 -0.19 -5.81 15 3 C 0.07 1.54 6.70 -38.84 -0.26 1.28 15 4 C -0.26 -5.03 8.00 -39.36 -0.31 -5.35 15 5 C 0.11 2.37 6.71 -38.45 -0.26 2.11 15 6 O -0.29 -6.03 9.95 -18.78 -0.19 -6.22 15 7 C 0.03 0.40 9.81 101.05 0.99 1.39 15 8 C 0.03 0.81 4.69 -106.59 -0.50 0.31 15 9 C -0.44 -11.96 8.91 -37.94 -0.34 -12.29 15 10 H 0.10 2.91 8.06 -52.48 -0.42 2.48 15 11 C 0.09 2.48 4.97 -17.32 -0.09 2.39 15 12 N -0.80 -21.80 13.94 55.54 0.77 -21.03 15 13 Si 0.90 21.77 24.73 -169.99 -4.20 17.57 15 14 H -0.25 -6.20 6.29 56.52 0.36 -5.84 15 15 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 16 H -0.25 -6.22 7.11 56.52 0.40 -5.82 15 17 C 0.03 0.84 5.61 -38.73 -0.22 0.63 15 18 F -0.12 -3.18 12.45 2.25 0.03 -3.15 15 19 C -0.08 -1.79 6.33 -39.35 -0.25 -2.04 15 20 Cl -0.08 -1.66 28.12 -51.86 -1.46 -3.12 15 21 H 0.05 0.55 7.64 -51.93 -0.40 0.16 15 22 H 0.09 0.89 8.14 -51.93 -0.42 0.47 15 23 H 0.05 0.56 7.64 -51.93 -0.40 0.16 15 24 H 0.13 1.97 4.47 -52.48 -0.23 1.74 15 25 H 0.05 0.57 7.66 -51.93 -0.40 0.18 15 26 H 0.05 0.59 7.66 -51.93 -0.40 0.19 15 27 H 0.09 1.06 8.14 -51.93 -0.42 0.63 15 28 H 0.29 7.08 8.30 -40.82 -0.34 6.75 15 LS Contribution 258.85 15.07 3.90 3.90 Total: -1.00 -29.30 258.85 -3.85 -33.15 By element: Atomic # 1 Polarization: -2.87 SS G_CDS: -2.27 Total: -5.14 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -0.24 Total: -10.15 kcal Atomic # 7 Polarization: -21.80 SS G_CDS: 0.77 Total: -21.03 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -0.37 Total: -12.03 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.03 Total: -3.15 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.20 Total: 17.57 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -1.46 Total: -3.12 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.30 -3.85 -33.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216630603.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.791 kcal (2) G-P(sol) polarization free energy of solvation -29.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds