Wall clock time and date at job start Mon Mar 30 2020 07:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35707 * 117.00106 * 2 1 4 4 C 1.39053 * 119.76183 * 359.97438 * 3 2 1 5 5 C 1.38027 * 120.19575 * 180.29924 * 4 3 2 6 6 O 1.35693 * 120.14005 * 179.72749 * 5 4 3 7 7 C 1.42893 * 117.00412 * 0.02562 * 6 5 4 8 8 C 1.41419 * 119.71105 * 359.46534 * 5 4 3 9 9 C 1.40976 * 120.23379 * 180.27508 * 8 5 4 10 10 H 1.08005 * 119.99736 * 316.68045 * 9 8 5 11 11 C 1.39847 * 120.00440 * 136.69222 * 9 8 5 12 12 N 1.30962 * 120.00468 * 160.53913 * 11 9 8 13 13 Si 1.86807 * 119.99554 * 340.53699 * 11 9 8 14 14 H 1.48498 * 109.47014 * 95.27784 * 13 11 9 15 15 H 1.48506 * 109.46781 * 215.27895 * 13 11 9 16 16 H 1.48499 * 109.47242 * 335.27540 * 13 11 9 17 17 C 1.41041 * 119.53331 * 0.53421 * 8 5 4 18 18 F 1.35099 * 120.10339 * 179.71484 * 17 8 5 19 19 C 1.37672 * 119.79433 * 359.73287 * 17 8 5 20 20 Cl 1.73600 * 119.85849 * 180.02562 * 19 17 8 21 21 H 1.08998 * 109.46892 * 60.00451 * 1 2 3 22 22 H 1.09002 * 109.47493 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47188 * 300.00320 * 1 2 3 24 24 H 1.08003 * 119.89699 * 0.02987 * 4 3 2 25 25 H 1.08996 * 109.47555 * 300.00023 * 7 6 5 26 26 H 1.09005 * 109.47352 * 60.00109 * 7 6 5 27 27 H 1.09001 * 109.47429 * 179.97438 * 7 6 5 28 28 H 0.96992 * 120.00129 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2830 2.3722 -0.0005 5 6 1.9003 3.6067 -0.0068 6 8 1.1554 4.7409 -0.0129 7 6 -0.2649 4.5844 -0.0119 8 6 3.3123 3.6843 -0.0012 9 6 3.9543 4.9394 -0.0016 10 1 3.5969 5.7285 -0.6467 11 6 5.0539 5.1628 0.8331 12 7 5.8775 6.1494 0.5813 13 14 5.3479 4.0537 2.3073 14 1 6.3043 2.9801 1.9360 15 1 5.9112 4.8541 3.4242 16 1 4.0620 3.4455 2.7334 17 6 4.0739 2.4972 -0.0007 18 9 5.4235 2.5579 -0.0011 19 6 3.4376 1.2763 -0.0001 20 17 4.3733 -0.1859 0.0012 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.2048 2.3093 -0.0005 25 1 -0.5699 4.0290 -0.8988 26 1 -0.5697 4.0387 0.8811 27 1 -0.7387 5.5660 -0.0167 28 1 6.6399 6.3045 1.1605 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216630603.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:17 Heat of formation + Delta-G solvation = -115.877220 kcal Electronic energy + Delta-G solvation = -17791.808698 eV Core-core repulsion = 14555.714303 eV Total energy + Delta-G solvation = -3236.094396 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 260.040 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.77473 -41.20110 -39.62759 -37.68525 -36.97390 -35.21820 -32.01300 -30.72645 -28.62311 -28.14924 -26.17947 -23.05115 -22.91160 -20.05365 -19.50347 -18.21833 -17.61613 -17.28541 -16.91918 -16.69494 -16.37223 -16.24161 -16.04154 -15.45822 -14.88894 -14.72956 -13.89241 -13.75358 -13.53974 -13.30015 -12.81242 -12.63904 -12.52355 -12.25505 -12.15425 -12.07236 -11.93654 -11.60779 -11.07609 -10.89588 -9.42950 -8.97673 -8.84011 -6.42708 0.21473 0.38797 1.21785 1.26590 1.30931 1.36609 2.10930 2.28317 2.37826 2.55805 3.01949 3.69671 4.00939 4.20517 4.28503 4.42456 4.46888 4.49134 4.54205 4.71762 4.78001 4.79913 4.97464 5.20684 5.30581 5.70614 6.12006 6.31545 6.39232 6.74205 6.81399 8.23247 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.011652 C = 0.007805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.012842 B = 2402.497418 C = 3586.669792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.320 6.320 3 C 0.113 3.887 4 C -0.253 4.253 5 C 0.120 3.880 6 O -0.320 6.320 7 C 0.014 3.986 8 C -0.002 4.002 9 C -0.473 4.473 10 H 0.067 0.933 11 C 0.061 3.939 12 N -0.849 5.849 13 Si 0.933 3.067 14 H -0.260 1.260 15 H -0.271 1.271 16 H -0.258 1.258 17 C 0.029 3.971 18 F -0.136 7.136 19 C -0.114 4.114 20 Cl -0.066 7.066 21 H 0.065 0.935 22 H 0.123 0.877 23 H 0.064 0.936 24 H 0.174 0.826 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.117 0.883 28 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.596 -8.960 1.049 15.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.234 6.234 3 C 0.066 3.934 4 C -0.273 4.273 5 C 0.073 3.927 6 O -0.233 6.233 7 C -0.081 4.081 8 C -0.005 4.005 9 C -0.503 4.503 10 H 0.085 0.915 11 C -0.153 4.153 12 N -0.476 5.476 13 Si 0.756 3.244 14 H -0.185 1.185 15 H -0.196 1.196 16 H -0.181 1.181 17 C 0.007 3.993 18 F -0.115 7.115 19 C -0.142 4.142 20 Cl -0.037 7.037 21 H 0.084 0.916 22 H 0.141 0.859 23 H 0.082 0.918 24 H 0.191 0.809 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.135 0.865 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.131 -8.887 1.077 15.077 hybrid contribution 0.585 -0.067 0.424 0.725 sum -11.547 -8.954 1.501 14.688 Atomic orbital electron populations 1.23378 0.76378 1.05661 1.02256 1.86007 1.23384 1.24863 1.89133 1.17690 0.88434 0.85377 1.01874 1.21174 1.01309 0.89713 1.15066 1.18862 0.89882 0.85428 0.98569 1.86093 1.20272 1.28817 1.88142 1.23401 0.77035 1.05345 1.02282 1.17020 0.90191 0.92255 1.01060 1.18727 1.11372 0.97521 1.22725 0.91514 1.26458 0.92878 0.95924 1.00015 1.69751 1.11342 1.29879 1.36669 0.86090 0.80608 0.79517 0.78184 1.18463 1.19650 1.18131 1.17051 0.76927 0.91934 1.13369 1.91248 1.29187 1.96776 1.94273 1.19811 0.90286 0.86023 1.18067 1.98272 1.72921 1.35010 1.97516 0.91638 0.85874 0.91776 0.80934 0.91393 0.91496 0.86524 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.80 113.37 1.11 1.44 15 2 O -0.32 -10.02 9.92 -90.28 -0.90 -10.91 15 3 C 0.11 4.26 6.70 22.75 0.15 4.41 15 4 C -0.25 -8.83 8.00 22.42 0.18 -8.65 15 5 C 0.12 5.15 6.71 23.00 0.15 5.30 15 6 O -0.32 -12.68 9.95 -90.12 -0.90 -13.58 15 7 C 0.01 0.33 9.81 113.37 1.11 1.44 15 8 C 0.00 -0.08 4.69 -21.14 -0.10 -0.18 15 9 C -0.47 -27.20 8.91 23.33 0.21 -26.99 15 10 H 0.07 4.13 8.06 -2.91 -0.02 4.11 15 11 C 0.06 3.46 4.97 85.21 0.42 3.89 15 12 N -0.85 -48.81 13.94 21.82 0.30 -48.51 15 13 Si 0.93 45.77 24.73 68.60 1.70 47.47 15 14 H -0.26 -12.80 6.29 99.48 0.63 -12.17 15 15 H -0.27 -12.27 7.11 99.48 0.71 -11.57 15 16 H -0.26 -12.58 7.11 99.48 0.71 -11.87 15 17 C 0.03 1.44 5.61 22.82 0.13 1.57 15 18 F -0.14 -7.20 12.45 44.97 0.56 -6.64 15 19 C -0.11 -4.99 6.33 22.42 0.14 -4.85 15 20 Cl -0.07 -2.60 28.12 -2.72 -0.08 -2.68 15 21 H 0.07 1.08 7.64 -2.39 -0.02 1.06 15 22 H 0.12 1.64 8.14 -2.39 -0.02 1.62 15 23 H 0.06 1.07 7.64 -2.39 -0.02 1.05 15 24 H 0.17 4.30 4.47 -2.91 -0.01 4.29 15 25 H 0.07 1.35 7.66 -2.39 -0.02 1.33 15 26 H 0.07 1.35 7.66 -2.38 -0.02 1.33 15 27 H 0.12 2.23 8.14 -2.39 -0.02 2.21 15 28 H 0.29 15.19 8.30 -92.71 -0.77 14.42 15 Total: -1.00 -66.97 258.85 5.32 -61.64 By element: Atomic # 1 Polarization: -5.30 SS G_CDS: 1.12 Total: -4.18 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 3.51 Total: -22.61 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.30 Total: -48.51 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -1.79 Total: -24.49 kcal Atomic # 9 Polarization: -7.20 SS G_CDS: 0.56 Total: -6.64 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.70 Total: 47.47 kcal Atomic # 17 Polarization: -2.60 SS G_CDS: -0.08 Total: -2.68 kcal Total: -66.97 5.32 -61.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216630603.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.234 kcal (2) G-P(sol) polarization free energy of solvation -66.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds