Wall clock time and date at job start Mon Mar 30 2020 06:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86800 * 119.99952 * 2 1 4 4 H 1.48496 * 109.47215 * 239.99852 * 3 2 1 5 5 H 1.48504 * 109.47099 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47049 * 119.99794 * 3 2 1 7 7 C 1.39924 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99887 * 200.28728 * 7 2 1 9 9 C 1.41130 * 120.00428 * 20.55791 * 7 2 1 10 10 C 1.41257 * 120.28098 * 38.54188 * 9 7 2 11 11 O 1.35709 * 120.20355 * 0.02562 * 10 9 7 12 12 C 1.38529 * 119.58921 * 180.02562 * 10 9 7 13 13 F 1.35097 * 119.91770 * 180.02562 * 12 10 9 14 14 C 1.38518 * 120.16321 * 359.97438 * 12 10 9 15 15 C 1.38752 * 120.58446 * 359.97438 * 14 12 10 16 16 C 1.37613 * 120.40432 * 359.76229 * 15 14 12 17 17 Br 1.89106 * 120.08763 * 180.25488 * 16 15 14 18 18 H 0.96999 * 120.00301 * 3.40973 * 1 2 3 19 19 H 0.96696 * 113.99841 * 90.00363 * 11 10 9 20 20 H 1.07993 * 119.70331 * 180.02562 * 14 12 10 21 21 H 1.07999 * 119.79591 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0965 1.6964 -1.2124 5 1 1.2777 2.7465 0.0006 6 1 3.0964 1.6964 1.2125 7 6 2.0083 -1.2118 -0.0005 8 1 3.0381 -1.2410 0.3238 9 6 1.3701 -2.3949 -0.4302 10 6 0.4792 -2.3660 -1.5260 11 8 0.2312 -1.1995 -2.1737 12 6 -0.1398 -3.5358 -1.9354 13 9 -0.9927 -3.5158 -2.9829 14 6 0.1143 -4.7260 -1.2740 15 6 0.9890 -4.7626 -0.1975 16 6 1.6210 -3.6158 0.2257 17 35 2.8169 -3.6773 1.6893 18 1 -0.4850 0.8385 -0.0500 19 1 0.8309 -1.0243 -2.9118 20 1 -0.3720 -5.6336 -1.5996 21 1 1.1782 -5.6977 0.3087 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216658009.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:16 Heat of formation + Delta-G solvation = -87.669322 kcal Electronic energy + Delta-G solvation = -12273.388727 eV Core-core repulsion = 9688.256737 eV Total energy + Delta-G solvation = -2585.131990 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 259.959 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.65546 -39.87150 -37.09300 -35.39198 -32.46917 -31.18426 -29.23446 -27.13186 -23.27908 -22.57574 -19.66506 -18.66626 -17.81376 -16.95046 -16.74174 -16.44843 -15.72290 -14.95307 -14.62611 -14.44182 -13.69858 -13.21206 -12.93002 -12.85875 -12.55623 -12.37962 -11.97526 -11.17091 -11.12249 -10.74598 -10.67790 -9.33630 -9.10015 -8.67736 -6.45467 0.46572 0.74083 1.26048 1.43202 1.49564 1.53632 2.23337 2.57763 3.28167 3.57136 3.84935 4.31128 4.59390 4.87441 5.18972 5.24393 5.44675 5.50106 5.68950 6.04973 6.33343 6.60304 6.81580 7.29814 8.32476 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.017391 B = 0.015052 C = 0.008394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.614584 B = 1859.746751 C = 3334.783272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.057 3.943 3 Si 0.971 3.029 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.475 4.475 8 H 0.091 0.909 9 C 0.108 3.892 10 C -0.007 4.007 11 O -0.471 6.471 12 C 0.082 3.918 13 F -0.157 7.157 14 C -0.258 4.258 15 C -0.039 4.039 16 C -0.200 4.200 17 Br -0.069 7.069 18 H 0.289 0.711 19 H 0.366 0.634 20 H 0.142 0.858 21 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.478 -3.485 0.670 5.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.164 4.164 3 Si 0.792 3.208 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.502 4.502 8 H 0.109 0.891 9 C 0.103 3.897 10 C -0.054 4.054 11 O -0.278 6.278 12 C 0.061 3.939 13 F -0.136 7.136 14 C -0.279 4.279 15 C -0.059 4.059 16 C -0.280 4.280 17 Br 0.015 6.985 18 H 0.099 0.901 19 H 0.220 0.780 20 H 0.160 0.840 21 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.199 -3.305 1.657 5.594 hybrid contribution -0.013 0.732 -0.955 1.203 sum 4.186 -2.573 0.702 4.963 Atomic orbital electron populations 1.69787 1.09319 1.31160 1.29875 1.26486 0.94933 1.03735 0.91281 0.85418 0.78894 0.76334 0.80178 1.18058 1.19971 1.18596 1.19580 0.99557 0.91997 1.39057 0.89105 1.17781 0.89445 0.92705 0.89806 1.18527 1.05373 0.84173 0.97356 1.84922 1.57548 1.37323 1.48011 1.18357 0.93014 0.95280 0.87207 1.91341 1.68758 1.97512 1.55947 1.20517 1.08587 0.96267 1.02501 1.20689 0.93654 0.96825 0.94703 1.21830 1.08487 0.97129 1.00564 1.96298 1.60948 1.98845 1.42391 0.90082 0.78044 0.84015 0.83917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -40.13 11.24 21.83 0.25 -39.88 14 2 C 0.06 2.72 4.39 85.24 0.37 3.10 14 3 Si 0.97 36.76 29.61 68.60 2.03 38.79 14 4 H -0.26 -9.35 7.11 99.48 0.71 -8.64 14 5 H -0.27 -10.15 7.11 99.48 0.71 -9.45 14 6 H -0.26 -9.70 7.11 99.48 0.71 -8.99 14 7 C -0.47 -23.56 8.03 23.39 0.19 -23.38 14 8 H 0.09 4.39 7.38 -2.91 -0.02 4.37 14 9 C 0.11 5.38 5.37 -21.19 -0.11 5.27 14 10 C -0.01 -0.33 6.20 23.08 0.14 -0.18 14 11 O -0.47 -22.66 10.24 -90.30 -0.92 -23.58 14 12 C 0.08 3.76 7.30 22.41 0.16 3.93 14 13 F -0.16 -7.03 17.10 44.97 0.77 -6.26 14 14 C -0.26 -10.52 10.02 22.46 0.22 -10.29 14 15 C -0.04 -1.55 9.75 22.24 0.22 -1.34 14 16 C -0.20 -8.99 6.27 22.76 0.14 -8.85 14 17 Br -0.07 -2.71 32.33 -20.37 -0.66 -3.37 14 18 H 0.29 13.78 8.30 -92.71 -0.77 13.01 14 19 H 0.37 14.48 9.06 -74.06 -0.67 13.81 14 20 H 0.14 4.86 8.06 -2.91 -0.02 4.84 14 21 H 0.14 4.72 8.06 -2.91 -0.02 4.70 14 Total: -1.00 -55.82 220.03 3.41 -52.41 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.61 Total: 13.65 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 1.34 Total: -31.75 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.25 Total: -39.88 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.92 Total: -23.58 kcal Atomic # 9 Polarization: -7.03 SS G_CDS: 0.77 Total: -6.26 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 2.03 Total: 38.79 kcal Atomic # 35 Polarization: -2.71 SS G_CDS: -0.66 Total: -3.37 kcal Total: -55.82 3.41 -52.41 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216658009.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.263 kcal (2) G-P(sol) polarization free energy of solvation -55.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds