Wall clock time and date at job start Mon Mar 30 2020 06:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86799 * 120.00203 * 2 1 4 4 H 1.48499 * 109.47456 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47107 * 299.99985 * 3 2 1 6 6 H 1.48499 * 109.47269 * 59.99829 * 3 2 1 7 7 C 1.39883 * 120.00183 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00469 * 197.95187 * 7 2 1 9 9 C 1.41200 * 119.99520 * 17.95585 * 7 2 1 10 10 C 1.40850 * 120.16913 * 24.56684 * 9 7 2 11 11 C 1.36585 * 119.80893 * 179.97438 * 10 9 7 12 12 F 1.35093 * 119.92383 * 180.02562 * 11 10 9 13 13 C 1.39535 * 120.15005 * 359.97438 * 11 10 9 14 14 O 1.35735 * 119.82995 * 180.02562 * 13 11 10 15 15 C 1.39303 * 120.34064 * 0.27913 * 13 11 10 16 16 Br 1.89105 * 119.90563 * 179.72150 * 15 13 11 17 17 C 1.36559 * 120.18983 * 359.44711 * 15 13 11 18 18 H 0.97009 * 119.99923 * 0.02562 * 1 2 3 19 19 H 1.07995 * 120.09299 * 359.97438 * 10 9 7 20 20 H 0.96702 * 113.99706 * 90.00115 * 14 13 11 21 21 H 1.07995 * 120.08059 * 180.29252 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8841 2.3964 1.2125 7 6 2.0083 -1.2114 0.0005 8 1 3.0488 -1.2341 0.2888 9 6 1.3538 -2.4046 -0.3759 10 6 0.2251 -2.3577 -1.2172 11 6 -0.4020 -3.5165 -1.5772 12 9 -1.4844 -3.4742 -2.3844 13 6 0.0734 -4.7438 -1.1139 14 8 -0.5545 -5.8914 -1.4762 15 6 1.1860 -4.7970 -0.2773 16 35 1.8151 -6.4665 0.3497 17 6 1.8270 -3.6475 0.0868 18 1 -0.4850 0.8401 -0.0004 19 1 -0.1433 -1.4083 -1.5766 20 1 -0.2115 -6.2877 -2.2888 21 1 2.6922 -3.6912 0.7316 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216658074.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:12 Heat of formation + Delta-G solvation = -93.553335 kcal Electronic energy + Delta-G solvation = -11975.779255 eV Core-core repulsion = 9390.392115 eV Total energy + Delta-G solvation = -2585.387140 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 259.959 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.70185 -39.99219 -37.75053 -35.38768 -32.75513 -31.15208 -29.79824 -27.03707 -23.22099 -22.98799 -19.57006 -19.19927 -17.78090 -17.25504 -16.73338 -16.53109 -15.82309 -15.00236 -14.60456 -14.52675 -13.66030 -13.57943 -13.14888 -12.80792 -12.61963 -12.32298 -11.86258 -11.56522 -11.30928 -11.10998 -10.97442 -9.47116 -9.41434 -8.82952 -6.54462 0.44648 0.56307 0.75396 1.40545 1.45020 1.57922 2.15865 2.40984 3.29695 3.45161 3.73904 4.49268 4.62998 4.76787 5.08283 5.17829 5.32937 5.46172 5.73759 5.92355 6.34023 6.58634 6.66539 6.98606 8.13203 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.031187 B = 0.007927 C = 0.006442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.591337 B = 3531.453463 C = 4345.550467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.034 3.966 3 Si 0.991 3.009 4 H -0.250 1.250 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.463 4.463 8 H 0.099 0.901 9 C 0.105 3.895 10 C -0.208 4.208 11 C 0.093 3.907 12 F -0.155 7.155 13 C -0.059 4.059 14 O -0.485 6.485 15 C -0.045 4.045 16 Br -0.046 7.046 17 C -0.201 4.201 18 H 0.297 0.703 19 H 0.123 0.877 20 H 0.381 0.619 21 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.397 -4.762 -0.582 6.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.184 4.184 3 Si 0.811 3.189 4 H -0.173 1.173 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.490 4.490 8 H 0.117 0.883 9 C 0.100 3.900 10 C -0.229 4.229 11 C 0.072 3.928 12 F -0.134 7.134 13 C -0.108 4.108 14 O -0.293 6.293 15 C -0.125 4.125 16 Br 0.039 6.961 17 C -0.222 4.222 18 H 0.108 0.892 19 H 0.141 0.859 20 H 0.235 0.765 21 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.036 -5.153 0.155 6.547 hybrid contribution -0.157 0.922 -0.739 1.192 sum 3.879 -4.230 -0.584 5.769 Atomic orbital electron populations 1.69873 1.09456 1.31702 1.32142 1.26978 0.95470 1.05250 0.90700 0.85003 0.79691 0.75205 0.79032 1.17267 1.18944 1.18960 1.20010 0.99147 0.91369 1.38488 0.88290 1.17658 0.90508 0.93164 0.88637 1.21053 1.01608 0.96031 1.04165 1.17763 0.86352 0.94600 0.94091 1.91343 1.53131 1.97468 1.71489 1.17498 0.99514 0.84548 1.09191 1.84825 1.60727 1.36691 1.47100 1.21488 0.97148 0.91984 1.01864 1.96467 1.87278 1.24764 1.87552 1.20859 1.04177 0.90679 1.06514 0.89215 0.85944 0.76468 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.10 10.96 21.82 0.24 -38.86 14 2 C 0.03 1.55 5.13 85.23 0.44 1.99 14 3 Si 0.99 33.99 29.60 68.60 2.03 36.02 14 4 H -0.25 -8.21 7.11 99.48 0.71 -7.51 14 5 H -0.26 -8.86 7.11 99.48 0.71 -8.16 14 6 H -0.26 -8.78 7.11 99.48 0.71 -8.08 14 7 C -0.46 -22.24 9.04 23.40 0.21 -22.02 14 8 H 0.10 4.42 7.91 -2.91 -0.02 4.40 14 9 C 0.10 5.22 5.57 -21.28 -0.12 5.10 14 10 C -0.21 -10.63 8.61 22.52 0.19 -10.44 14 11 C 0.09 4.51 7.26 22.20 0.16 4.67 14 12 F -0.16 -7.37 17.10 44.97 0.77 -6.60 14 13 C -0.06 -2.67 6.73 22.84 0.15 -2.52 14 14 O -0.48 -19.29 12.67 -90.59 -1.15 -20.44 14 15 C -0.05 -1.95 6.20 22.13 0.14 -1.81 14 16 Br -0.05 -1.59 33.13 -20.37 -0.67 -2.26 14 17 C -0.20 -9.15 9.46 22.51 0.21 -8.93 14 18 H 0.30 12.85 8.30 -92.70 -0.77 12.08 14 19 H 0.12 6.51 6.16 -2.91 -0.02 6.49 14 20 H 0.38 11.61 9.06 -74.06 -0.67 10.94 14 21 H 0.13 5.32 8.06 -2.91 -0.02 5.30 14 Total: -1.00 -53.87 222.25 3.22 -50.65 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.62 Total: 15.46 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 1.39 Total: -33.96 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.24 Total: -38.86 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -1.15 Total: -20.44 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 0.77 Total: -6.60 kcal Atomic # 14 Polarization: 33.99 SS G_CDS: 2.03 Total: 36.02 kcal Atomic # 35 Polarization: -1.59 SS G_CDS: -0.67 Total: -2.26 kcal Total: -53.87 3.22 -50.65 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216658074.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.903 kcal (2) G-P(sol) polarization free energy of solvation -53.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds