Wall clock time and date at job start Mon Mar 30 2020 06:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30913 * 1 3 3 Si 1.86799 * 120.00126 * 2 1 4 4 H 1.48504 * 109.47251 * 240.00473 * 3 2 1 5 5 H 1.48501 * 109.47103 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47118 * 119.99986 * 3 2 1 7 7 C 1.39872 * 120.00032 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00111 * 196.52026 * 7 2 1 9 9 C 1.41144 * 119.99789 * 16.79622 * 7 2 1 10 10 C 1.40828 * 120.19683 * 25.58342 * 9 7 2 11 11 C 1.36351 * 119.97183 * 180.02562 * 10 9 7 12 12 C 1.39370 * 120.37984 * 359.97438 * 11 10 9 13 13 O 1.35699 * 119.79740 * 180.02562 * 12 11 10 14 14 C 1.39222 * 120.40233 * 0.02562 * 12 11 10 15 15 Br 1.89100 * 119.99260 * 179.97438 * 14 12 11 16 16 C 1.37814 * 120.01668 * 359.67814 * 14 12 11 17 17 F 1.35102 * 120.19045 * 180.29836 * 16 14 12 18 18 H 0.97004 * 119.99639 * 0.02562 * 1 2 3 19 19 H 1.08001 * 120.01321 * 0.02562 * 10 9 7 20 20 H 1.07999 * 119.80886 * 180.02562 * 11 10 9 21 21 H 0.96694 * 114.00569 * 89.99725 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.0969 1.6964 -1.2126 5 1 1.2782 2.7465 0.0006 6 1 3.0969 1.6964 1.2125 7 6 2.0085 -1.2113 -0.0005 8 1 3.0550 -1.2308 0.2654 9 6 1.3479 -2.4074 -0.3543 10 6 0.2174 -2.3708 -1.1933 11 6 -0.4175 -3.5290 -1.5318 12 6 0.0458 -4.7528 -1.0523 13 8 -0.5948 -5.8983 -1.3970 14 6 1.1619 -4.8073 -0.2218 15 35 1.7802 -6.4741 0.4227 16 6 1.8199 -3.6473 0.1257 17 9 2.9069 -3.6967 0.9265 18 1 -0.4850 0.8401 -0.0004 19 1 -0.1464 -1.4256 -1.5686 20 1 -1.2840 -3.4979 -2.1757 21 1 -0.2579 -6.3097 -2.2046 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216658145.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:17 Heat of formation + Delta-G solvation = -91.410469 kcal Electronic energy + Delta-G solvation = -12040.223265 eV Core-core repulsion = 9454.929047 eV Total energy + Delta-G solvation = -2585.294218 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 259.959 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.35939 -40.03376 -37.57143 -35.31302 -32.82437 -31.19555 -29.75441 -26.92610 -23.17034 -22.95168 -19.38500 -19.30669 -17.62690 -17.22350 -16.66041 -16.21369 -15.89520 -15.19603 -14.52913 -14.29294 -13.81793 -13.54161 -12.98954 -12.74734 -12.44221 -12.21912 -11.86503 -11.64199 -11.42168 -11.13017 -11.00631 -9.42786 -9.40761 -8.81685 -6.50679 0.44731 0.56891 0.74289 1.38841 1.46330 1.51748 2.16478 2.45146 3.27195 3.42575 4.00146 4.28559 4.63700 4.86049 5.10584 5.16731 5.35037 5.66963 5.80998 5.86834 6.33966 6.57830 6.64809 7.05618 8.14820 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.041505 B = 0.007907 C = 0.006771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.448271 B = 3540.146112 C = 4134.361579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.041 3.959 3 Si 0.988 3.012 4 H -0.256 1.256 5 H -0.260 1.260 6 H -0.263 1.263 7 C -0.477 4.477 8 H 0.078 0.922 9 C 0.060 3.940 10 C -0.134 4.134 11 C -0.115 4.115 12 C 0.019 3.981 13 O -0.487 6.487 14 C -0.113 4.113 15 Br -0.049 7.049 16 C -0.028 4.028 17 F -0.153 7.153 18 H 0.299 0.701 19 H 0.130 0.870 20 H 0.139 0.861 21 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.861 -4.737 -2.999 5.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.177 4.177 3 Si 0.808 3.192 4 H -0.180 1.180 5 H -0.184 1.184 6 H -0.188 1.188 7 C -0.505 4.505 8 H 0.096 0.904 9 C 0.056 3.944 10 C -0.154 4.154 11 C -0.135 4.135 12 C -0.029 4.029 13 O -0.297 6.297 14 C -0.194 4.194 15 Br 0.036 6.964 16 C -0.050 4.050 17 F -0.132 7.132 18 H 0.110 0.890 19 H 0.148 0.852 20 H 0.157 0.843 21 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 0.576 -5.110 -2.202 5.594 hybrid contribution 0.637 0.786 -0.200 1.031 sum 1.213 -4.324 -2.402 5.093 Atomic orbital electron populations 1.69813 1.08842 1.31777 1.32662 1.26774 0.95632 1.04500 0.90790 0.85141 0.78843 0.74988 0.80225 1.17995 1.18362 1.18791 1.19698 0.98167 0.91928 1.40671 0.90359 1.17961 0.93753 0.90950 0.91766 1.20965 0.97421 0.98096 0.98935 1.21008 1.00410 0.91093 1.00947 1.17487 0.94769 0.86669 1.03943 1.84767 1.59644 1.37033 1.48292 1.22145 1.00353 0.90103 1.06778 1.96437 1.88425 1.24079 1.87492 1.17497 0.91355 0.93936 1.02248 1.91296 1.52617 1.97144 1.72160 0.89015 0.85200 0.84286 0.75568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.45 10.96 21.82 0.24 -38.21 14 2 C 0.04 1.91 5.15 85.23 0.44 2.35 14 3 Si 0.99 35.41 29.59 68.60 2.03 37.44 14 4 H -0.26 -8.93 7.11 99.48 0.71 -8.22 14 5 H -0.26 -8.58 7.11 99.48 0.71 -7.88 14 6 H -0.26 -9.45 7.11 99.48 0.71 -8.74 14 7 C -0.48 -24.70 8.77 23.38 0.20 -24.49 14 8 H 0.08 4.04 7.74 -2.91 -0.02 4.02 14 9 C 0.06 3.12 5.57 -21.23 -0.12 3.00 14 10 C -0.13 -6.44 8.62 22.46 0.19 -6.24 14 11 C -0.12 -4.87 9.91 22.10 0.22 -4.65 14 12 C 0.02 0.80 6.72 22.78 0.15 0.95 14 13 O -0.49 -17.27 12.81 -90.19 -1.16 -18.42 14 14 C -0.11 -5.15 6.24 22.41 0.14 -5.01 14 15 Br -0.05 -1.87 32.72 -20.37 -0.67 -2.54 14 16 C -0.03 -1.42 7.27 22.87 0.17 -1.25 14 17 F -0.15 -7.80 16.18 44.97 0.73 -7.08 14 18 H 0.30 12.65 8.30 -92.71 -0.77 11.88 14 19 H 0.13 6.25 6.19 -2.91 -0.02 6.23 14 20 H 0.14 4.98 8.06 -2.91 -0.02 4.96 14 21 H 0.39 9.98 9.06 -74.06 -0.67 9.30 14 Total: -1.00 -55.78 221.16 3.19 -52.59 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.62 Total: 11.56 kcal Atomic # 6 Polarization: -36.74 SS G_CDS: 1.40 Total: -35.34 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.24 Total: -38.21 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -1.16 Total: -18.42 kcal Atomic # 9 Polarization: -7.80 SS G_CDS: 0.73 Total: -7.08 kcal Atomic # 14 Polarization: 35.41 SS G_CDS: 2.03 Total: 37.44 kcal Atomic # 35 Polarization: -1.87 SS G_CDS: -0.67 Total: -2.54 kcal Total: -55.78 3.19 -52.59 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216658145.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.817 kcal (2) G-P(sol) polarization free energy of solvation -55.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds