Wall clock time and date at job start Mon Mar 30 2020 06:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86802 * 120.00245 * 2 1 4 4 H 1.48500 * 109.46664 * 85.18710 * 3 2 1 5 5 H 1.48499 * 109.47176 * 205.18521 * 3 2 1 6 6 H 1.48492 * 109.47292 * 325.18723 * 3 2 1 7 7 C 1.39932 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99489 * 197.30820 * 7 2 1 9 9 C 1.41160 * 120.00095 * 17.31578 * 7 2 1 10 10 C 1.40752 * 120.27343 * 25.14329 * 9 7 2 11 11 C 1.36540 * 119.96036 * 179.69461 * 10 9 7 12 12 Br 1.89099 * 119.73176 * 180.29960 * 11 10 9 13 13 C 1.38924 * 120.53415 * 0.60924 * 11 10 9 14 14 C 1.38437 * 120.55968 * 359.67145 * 13 11 10 15 15 F 1.35100 * 119.99330 * 180.02562 * 14 13 11 16 16 C 1.38667 * 120.01644 * 0.02562 * 14 13 11 17 17 O 1.35705 * 120.26033 * 180.02562 * 16 14 13 18 18 H 0.96996 * 119.99655 * 0.02562 * 1 2 3 19 19 H 1.07999 * 120.01930 * 359.97438 * 10 9 7 20 20 H 1.07999 * 119.71537 * 179.68865 * 13 11 10 21 21 H 0.96702 * 113.99954 * 269.97355 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3885 2.1050 1.3952 5 1 3.5875 1.4129 -0.5958 6 1 1.4949 2.6211 -0.7992 7 6 2.0083 -1.2119 0.0005 8 1 3.0516 -1.2329 0.2788 9 6 1.3504 -2.4068 -0.3628 10 6 0.2215 -2.3682 -1.2025 11 6 -0.4062 -3.5284 -1.5550 12 35 -1.9173 -3.4697 -2.6904 13 6 0.0524 -4.7511 -1.0810 14 6 1.1572 -4.8140 -0.2492 15 9 1.5937 -6.0093 0.2046 16 6 1.8160 -3.6505 0.1183 17 8 2.8998 -3.7064 0.9330 18 1 -0.4849 0.8400 -0.0004 19 1 -0.1453 -1.4218 -1.5715 20 1 -0.4572 -5.6603 -1.3642 21 1 2.6875 -3.6470 1.8746 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216658207.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:29 Heat of formation + Delta-G solvation = -95.453817 kcal Electronic energy + Delta-G solvation = -12030.240373 eV Core-core repulsion = 9444.770823 eV Total energy + Delta-G solvation = -2585.469551 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 259.959 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.70837 -39.97550 -37.34820 -35.76747 -32.43680 -31.45904 -29.26255 -27.42638 -23.35658 -22.73079 -19.66889 -18.89637 -17.69827 -17.29838 -16.74833 -16.50593 -15.91204 -15.02734 -14.70878 -14.48684 -13.64397 -13.34961 -13.26846 -12.96014 -12.78784 -12.18978 -11.90441 -11.47422 -11.14380 -11.07890 -11.00644 -9.59885 -9.24311 -8.82783 -6.56314 0.40996 0.61221 0.80353 1.40051 1.45635 1.56157 2.15920 2.41515 3.23233 3.55795 3.76048 4.39717 4.65129 4.75394 5.02616 5.19794 5.32391 5.57662 5.69413 5.95226 6.27092 6.54840 6.65523 7.13628 8.11735 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.019605 B = 0.010612 C = 0.007030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.872626 B = 2637.881642 C = 3981.922384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.039 3.961 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.262 1.262 7 C -0.456 4.456 8 H 0.088 0.912 9 C 0.087 3.913 10 C -0.146 4.146 11 C -0.044 4.044 12 Br -0.058 7.058 13 C -0.252 4.252 14 C 0.101 3.899 15 F -0.151 7.151 16 C -0.068 4.068 17 O -0.490 6.490 18 H 0.299 0.701 19 H 0.129 0.871 20 H 0.134 0.866 21 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.118 -0.320 -2.295 3.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.180 4.180 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.183 1.183 6 H -0.186 1.186 7 C -0.483 4.483 8 H 0.106 0.894 9 C 0.082 3.918 10 C -0.167 4.167 11 C -0.123 4.123 12 Br 0.027 6.973 13 C -0.274 4.274 14 C 0.081 3.919 15 F -0.130 7.130 16 C -0.115 4.115 17 O -0.299 6.299 18 H 0.111 0.889 19 H 0.146 0.854 20 H 0.152 0.848 21 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -3.582 -0.247 -3.219 4.822 hybrid contribution 0.354 0.259 0.920 1.020 sum -3.228 0.012 -2.299 3.963 Atomic orbital electron populations 1.69814 1.09014 1.31900 1.31493 1.26875 0.95547 1.04758 0.90789 0.85080 0.79135 0.75270 0.79745 1.18345 1.18348 1.18560 1.19788 0.98528 0.91197 1.38782 0.89392 1.17947 0.91279 0.92183 0.90397 1.21027 0.98875 0.96632 1.00143 1.20997 0.95567 0.95335 1.00445 1.96456 1.37847 1.99270 1.63746 1.20226 1.01163 0.97414 1.08588 1.17850 0.95397 0.79515 0.99142 1.91356 1.89334 1.44341 1.87920 1.18558 0.96516 0.91441 1.04985 1.84709 1.29479 1.95590 1.20144 0.88946 0.85350 0.84803 0.76725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.24 10.97 21.83 0.24 -37.00 14 2 C 0.04 1.78 5.14 85.25 0.44 2.22 14 3 Si 0.99 34.37 29.59 68.60 2.03 36.40 14 4 H -0.26 -8.65 7.11 99.48 0.71 -7.94 14 5 H -0.26 -9.11 7.11 99.48 0.71 -8.40 14 6 H -0.26 -8.60 7.11 99.48 0.71 -7.90 14 7 C -0.46 -22.60 8.71 23.40 0.20 -22.40 14 8 H 0.09 4.32 7.66 -2.91 -0.02 4.30 14 9 C 0.09 4.41 5.58 -21.21 -0.12 4.30 14 10 C -0.15 -7.11 8.35 22.49 0.19 -6.93 14 11 C -0.04 -1.95 6.18 22.04 0.14 -1.82 14 12 Br -0.06 -2.11 33.67 -20.37 -0.69 -2.80 14 13 C -0.25 -11.04 9.75 22.48 0.22 -10.82 14 14 C 0.10 4.71 7.30 22.42 0.16 4.87 14 15 F -0.15 -6.62 17.11 44.97 0.77 -5.85 14 16 C -0.07 -3.33 6.75 23.11 0.16 -3.17 14 17 O -0.49 -22.08 12.67 -90.25 -1.14 -23.22 14 18 H 0.30 12.43 8.30 -92.71 -0.77 11.66 14 19 H 0.13 6.42 6.18 -2.91 -0.02 6.40 14 20 H 0.13 5.22 8.06 -2.91 -0.02 5.20 14 21 H 0.38 13.76 9.06 -74.06 -0.67 13.09 14 Total: -1.00 -53.02 222.35 3.21 -49.81 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.62 Total: 16.41 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 1.39 Total: -33.74 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.24 Total: -37.00 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -1.14 Total: -23.22 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 0.77 Total: -5.85 kcal Atomic # 14 Polarization: 34.37 SS G_CDS: 2.03 Total: 36.40 kcal Atomic # 35 Polarization: -2.11 SS G_CDS: -0.69 Total: -2.80 kcal Total: -53.02 3.21 -49.81 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216658207.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.645 kcal (2) G-P(sol) polarization free energy of solvation -53.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds