Wall clock time and date at job start Mon Mar 30 2020 06:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86802 * 120.00183 * 2 1 4 4 H 1.48493 * 109.47398 * 274.87335 * 3 2 1 5 5 H 1.48507 * 109.46813 * 34.86960 * 3 2 1 6 6 H 1.48502 * 109.47368 * 154.86870 * 3 2 1 7 7 C 1.39912 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99973 * 199.98856 * 7 2 1 9 9 C 1.41092 * 120.00267 * 20.26745 * 7 2 1 10 10 C 1.41327 * 120.29894 * 216.41875 * 9 7 2 11 11 O 1.35674 * 120.18282 * 359.94794 * 10 9 7 12 12 C 1.38281 * 119.63953 * 179.97438 * 10 9 7 13 13 C 1.38420 * 120.25419 * 359.97438 * 12 10 9 14 14 C 1.38734 * 120.61717 * 359.97438 * 13 12 10 15 15 Br 1.89090 * 119.82440 * 180.02562 * 14 13 12 16 16 C 1.37913 * 120.35246 * 359.78113 * 14 13 12 17 17 F 1.35100 * 120.13406 * 180.23673 * 16 14 13 18 18 H 0.96998 * 120.00104 * 359.97438 * 1 2 3 19 19 H 0.96694 * 113.99963 * 90.00298 * 11 10 9 20 20 H 1.08002 * 119.87764 * 180.02562 * 12 10 9 21 21 H 1.07989 * 119.69392 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3875 2.1059 -1.3949 5 1 1.4956 2.6208 0.8005 6 1 3.5882 1.4127 0.5946 7 6 2.0084 -1.2117 -0.0005 8 1 3.0397 -1.2400 0.3192 9 6 1.3685 -2.3956 -0.4243 10 6 1.6519 -3.6259 0.2109 11 8 2.5429 -3.6766 1.2328 12 6 1.0165 -4.7778 -0.2152 13 6 0.1072 -4.7278 -1.2576 14 6 -0.1797 -3.5257 -1.8880 15 35 -1.4262 -3.4832 -3.3093 16 6 0.4356 -2.3608 -1.4802 17 9 0.1494 -1.1918 -2.0941 18 1 -0.4850 0.8400 0.0004 19 1 2.1483 -3.5440 2.1055 20 1 1.2298 -5.7199 0.2678 21 1 -0.3835 -5.6330 -1.5833 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216658270.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:28 Heat of formation + Delta-G solvation = -86.453316 kcal Electronic energy + Delta-G solvation = -12288.087483 eV Core-core repulsion = 9703.008223 eV Total energy + Delta-G solvation = -2585.079260 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 259.959 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.12686 -39.93843 -37.02309 -35.68057 -32.46682 -31.60472 -29.18141 -27.20466 -23.24819 -22.68881 -19.52079 -18.99447 -17.41363 -17.03996 -16.73268 -16.05149 -15.88686 -15.16314 -14.61531 -14.18253 -13.51851 -13.30661 -13.18125 -12.90476 -12.75588 -12.19315 -11.78209 -11.53389 -11.23630 -11.10706 -10.88206 -9.40828 -9.14655 -8.78511 -6.50516 0.38108 0.71107 0.78801 1.35691 1.43466 1.49521 2.16919 2.51855 3.16827 3.64283 4.02892 4.30576 4.60651 4.87576 5.11663 5.25777 5.36881 5.56367 5.72675 5.99857 6.25746 6.58617 6.74539 7.21194 8.22105 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.026372 B = 0.010596 C = 0.007825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.496744 B = 2641.889410 C = 3577.291222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.039 3.961 3 Si 0.977 3.023 4 H -0.269 1.269 5 H -0.264 1.264 6 H -0.254 1.254 7 C -0.483 4.483 8 H 0.085 0.915 9 C 0.034 3.966 10 C 0.018 3.982 11 O -0.495 6.495 12 C -0.114 4.114 13 C -0.167 4.167 14 C -0.113 4.113 15 Br -0.060 7.060 16 C 0.041 3.959 17 F -0.140 7.140 18 H 0.291 0.709 19 H 0.386 0.614 20 H 0.148 0.852 21 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.086 -4.526 -1.877 5.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.179 4.179 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.189 1.189 6 H -0.177 1.177 7 C -0.512 4.512 8 H 0.103 0.897 9 C 0.030 3.970 10 C -0.029 4.029 11 O -0.305 6.305 12 C -0.134 4.134 13 C -0.187 4.187 14 C -0.193 4.193 15 Br 0.025 6.975 16 C 0.019 3.981 17 F -0.119 7.119 18 H 0.102 0.898 19 H 0.242 0.758 20 H 0.166 0.834 21 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.373 -4.417 -2.855 5.770 hybrid contribution 0.014 1.134 0.584 1.276 sum -2.359 -3.283 -2.271 4.637 Atomic orbital electron populations 1.69810 1.09105 1.31295 1.32849 1.26650 0.95325 1.04415 0.91480 0.85239 0.79507 0.76263 0.79175 1.19444 1.18856 1.17735 1.19454 0.99405 0.91801 1.40505 0.89663 1.18182 0.92339 0.94933 0.91585 1.18508 0.98073 0.92266 0.94015 1.84642 1.34754 1.94189 1.16909 1.21199 0.96067 0.97974 0.98145 1.20459 1.03155 0.95334 0.99799 1.21808 1.01573 0.96055 0.99912 1.96448 1.57087 1.99317 1.44673 1.17669 1.04138 0.80066 0.96257 1.91333 1.92386 1.47106 1.81039 0.89820 0.75798 0.83427 0.83585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.37 11.10 21.82 0.24 -42.13 14 2 C 0.04 1.97 4.50 85.24 0.38 2.36 14 3 Si 0.98 38.80 29.60 68.60 2.03 40.83 14 4 H -0.27 -10.74 7.11 99.48 0.71 -10.03 14 5 H -0.26 -9.84 7.11 99.48 0.71 -9.13 14 6 H -0.25 -9.69 7.11 99.48 0.71 -8.99 14 7 C -0.48 -25.57 8.49 23.38 0.20 -25.37 14 8 H 0.09 4.46 7.88 -2.91 -0.02 4.43 14 9 C 0.03 1.78 5.42 -21.16 -0.11 1.67 14 10 C 0.02 0.80 6.74 23.04 0.16 0.96 14 11 O -0.49 -20.28 12.93 -89.91 -1.16 -21.44 14 12 C -0.11 -4.47 9.96 22.32 0.22 -4.25 14 13 C -0.17 -6.54 9.77 22.43 0.22 -6.32 14 14 C -0.11 -5.08 6.22 22.31 0.14 -4.95 14 15 Br -0.06 -2.29 33.25 -20.37 -0.68 -2.96 14 16 C 0.04 2.14 6.65 22.86 0.15 2.30 14 17 F -0.14 -7.64 13.67 44.97 0.61 -7.02 14 18 H 0.29 14.03 8.30 -92.71 -0.77 13.27 14 19 H 0.39 12.53 9.06 -74.06 -0.67 11.85 14 20 H 0.15 4.64 8.06 -2.91 -0.02 4.61 14 21 H 0.15 4.73 8.06 -2.92 -0.02 4.70 14 Total: -1.00 -58.63 220.97 3.01 -55.62 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.61 Total: 10.72 kcal Atomic # 6 Polarization: -34.97 SS G_CDS: 1.35 Total: -33.61 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.24 Total: -42.13 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -1.16 Total: -21.44 kcal Atomic # 9 Polarization: -7.64 SS G_CDS: 0.61 Total: -7.02 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Atomic # 35 Polarization: -2.29 SS G_CDS: -0.68 Total: -2.96 kcal Total: -58.63 3.01 -55.62 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216658270.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.835 kcal (2) G-P(sol) polarization free energy of solvation -58.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds