Wall clock time and date at job start Mon Mar 30 2020 06:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86799 * 119.99940 * 2 1 4 4 H 1.48506 * 109.47328 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47664 * 119.99884 * 3 2 1 6 6 H 1.48508 * 109.46830 * 240.00014 * 3 2 1 7 7 C 1.39923 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99622 * 154.66534 * 7 2 1 9 9 C 1.41145 * 120.00213 * 334.66213 * 7 2 1 10 10 C 1.40745 * 120.26884 * 334.43324 * 9 7 2 11 11 C 1.37655 * 119.80068 * 179.69744 * 10 9 7 12 12 F 1.35093 * 119.81975 * 180.32020 * 11 10 9 13 13 C 1.39063 * 120.36107 * 0.60254 * 11 10 9 14 14 C 1.38329 * 120.55983 * 359.66843 * 13 11 10 15 15 Br 1.89107 * 119.90820 * 180.02562 * 14 13 11 16 16 C 1.38490 * 120.18642 * 0.03086 * 14 13 11 17 17 O 1.35687 * 120.18540 * 180.02562 * 16 14 13 18 18 H 0.97001 * 120.00173 * 174.20300 * 1 2 3 19 19 H 1.07998 * 120.10083 * 359.97052 * 10 9 7 20 20 H 1.08004 * 119.71504 * 179.69531 * 13 11 10 21 21 H 0.96696 * 113.99957 * 269.97544 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 1.2776 2.7465 -0.0006 5 1 3.0964 1.6965 1.2124 6 1 3.0964 1.6963 -1.2126 7 6 2.0082 -1.2118 0.0005 8 1 3.0104 -1.2569 -0.3997 9 6 1.4044 -2.3751 0.5242 10 6 0.3913 -2.2727 1.4958 11 6 -0.1954 -3.4133 1.9954 12 9 -1.1723 -3.3152 2.9233 13 6 0.2161 -4.6663 1.5544 14 6 1.2143 -4.7846 0.6041 15 35 1.7590 -6.4978 0.0170 16 6 1.8159 -3.6520 0.0815 17 8 2.7947 -3.7681 -0.8511 18 1 -0.4850 -0.8357 -0.0848 19 1 0.0721 -1.3019 1.8452 20 1 -0.2481 -5.5546 1.9570 21 1 3.6858 -3.8283 -0.4805 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216658406.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:25 Heat of formation + Delta-G solvation = -99.312833 kcal Electronic energy + Delta-G solvation = -12054.245403 eV Core-core repulsion = 9468.608513 eV Total energy + Delta-G solvation = -2585.636890 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 259.959 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -49.81993 -40.26359 -37.26233 -35.99873 -32.75065 -30.95121 -29.45663 -27.32026 -23.30520 -23.02077 -20.12825 -19.05495 -17.73493 -17.66286 -16.59701 -16.20340 -15.78495 -15.35798 -14.71876 -14.44203 -14.18060 -13.63533 -12.98007 -12.88642 -12.51690 -12.03122 -11.89170 -11.62910 -11.22289 -11.16895 -10.90356 -9.79498 -9.53803 -9.20578 -6.67183 0.26151 0.46397 0.66677 1.52195 1.58572 1.81024 2.28058 2.36707 3.07016 3.53875 3.56276 4.22382 4.36879 4.66082 4.94323 5.14672 5.30807 5.40541 5.57121 5.81591 5.95678 6.32578 6.62295 7.06556 7.84721 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.031279 B = 0.008282 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.963575 B = 3380.136664 C = 4166.396700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.002 3.998 3 Si 1.119 2.881 4 H -0.273 1.273 5 H -0.258 1.258 6 H -0.254 1.254 7 C -0.504 4.504 8 H 0.093 0.907 9 C 0.071 3.929 10 C -0.260 4.260 11 C 0.125 3.875 12 F -0.153 7.153 13 C -0.258 4.258 14 C -0.046 4.046 15 Br -0.040 7.040 16 C -0.001 4.001 17 O -0.481 6.481 18 H 0.287 0.713 19 H 0.109 0.891 20 H 0.137 0.863 21 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.817 -5.969 0.564 7.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.216 4.216 3 Si 0.935 3.065 4 H -0.197 1.197 5 H -0.182 1.182 6 H -0.178 1.178 7 C -0.530 4.530 8 H 0.111 0.889 9 C 0.066 3.934 10 C -0.281 4.281 11 C 0.105 3.895 12 F -0.132 7.132 13 C -0.279 4.279 14 C -0.126 4.126 15 Br 0.045 6.955 16 C -0.049 4.049 17 O -0.290 6.290 18 H 0.099 0.901 19 H 0.127 0.873 20 H 0.155 0.845 21 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 4.245 -4.975 0.022 6.539 hybrid contribution -0.106 -1.465 0.645 1.604 sum 4.138 -6.439 0.667 7.683 Atomic orbital electron populations 1.70593 1.09160 1.33672 1.28461 1.28686 0.95525 1.07869 0.89542 0.82975 0.74788 0.69193 0.79537 1.19738 1.18247 1.17772 1.20773 1.03639 0.93970 1.34652 0.88851 1.17901 0.91849 0.93113 0.90532 1.20986 1.05964 0.96641 1.04460 1.17478 0.88109 0.94479 0.89431 1.91377 1.60586 1.97222 1.64026 1.20216 1.05626 0.95797 1.06274 1.21763 1.01101 0.90358 0.99403 1.96488 1.90538 1.18819 1.89666 1.18318 0.98789 0.90283 0.97519 1.84742 1.17204 1.95252 1.31825 0.90093 0.87255 0.84492 0.76381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.92 12.32 21.82 0.27 -40.65 14 2 C 0.00 0.11 4.94 85.25 0.42 0.53 14 3 Si 1.12 39.40 30.00 68.60 2.06 41.46 14 4 H -0.27 -9.62 7.11 99.48 0.71 -8.91 14 5 H -0.26 -8.48 7.11 99.48 0.71 -7.77 14 6 H -0.25 -8.15 7.11 99.48 0.71 -7.44 14 7 C -0.50 -24.85 8.64 23.39 0.20 -24.65 14 8 H 0.09 4.37 7.71 -2.91 -0.02 4.35 14 9 C 0.07 3.55 5.31 -21.21 -0.11 3.44 14 10 C -0.26 -12.99 7.91 22.75 0.18 -12.81 14 11 C 0.13 5.80 7.28 22.33 0.16 5.96 14 12 F -0.15 -6.77 17.26 44.97 0.78 -5.99 14 13 C -0.26 -10.98 9.76 22.49 0.22 -10.76 14 14 C -0.05 -1.95 6.23 22.35 0.14 -1.81 14 15 Br -0.04 -1.37 33.14 -20.37 -0.68 -2.04 14 16 C 0.00 -0.04 6.73 23.08 0.16 0.11 14 17 O -0.48 -19.84 12.12 -90.06 -1.09 -20.93 14 18 H 0.29 15.46 6.68 -92.71 -0.62 14.84 14 19 H 0.11 5.71 6.50 -2.91 -0.02 5.69 14 20 H 0.14 5.19 8.06 -2.91 -0.02 5.16 14 21 H 0.38 12.31 9.06 -74.06 -0.67 11.63 14 Total: -1.00 -54.06 220.96 3.47 -50.59 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.77 Total: 17.56 kcal Atomic # 6 Polarization: -41.36 SS G_CDS: 1.37 Total: -40.00 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.27 Total: -40.65 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -1.09 Total: -20.93 kcal Atomic # 9 Polarization: -6.77 SS G_CDS: 0.78 Total: -5.99 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.06 Total: 41.46 kcal Atomic # 35 Polarization: -1.37 SS G_CDS: -0.68 Total: -2.04 kcal Total: -54.06 3.47 -50.59 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216658406.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.723 kcal (2) G-P(sol) polarization free energy of solvation -54.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds