Wall clock time and date at job start Mon Mar 30 2020 06:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86801 * 120.00103 * 2 1 4 4 H 1.48503 * 109.46852 * 240.00204 * 3 2 1 5 5 H 1.48496 * 109.46962 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47283 * 120.00078 * 3 2 1 7 7 C 1.39902 * 119.99495 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99379 * 162.76199 * 7 2 1 9 9 C 1.41305 * 120.00430 * 342.76390 * 7 2 1 10 10 C 1.40729 * 120.18384 * 334.78987 * 9 7 2 11 11 C 1.37944 * 119.74335 * 179.97438 * 10 9 7 12 12 O 1.35949 * 119.93420 * 179.97438 * 11 10 9 13 13 C 1.39438 * 120.12537 * 0.26202 * 11 10 9 14 14 F 1.35103 * 119.80998 * 179.74192 * 13 11 10 15 15 C 1.38872 * 120.38016 * 359.48167 * 13 11 10 16 16 Br 1.89099 * 119.87401 * 180.28074 * 15 13 11 17 17 C 1.37672 * 120.25331 * 0.51870 * 15 13 11 18 18 H 0.96998 * 119.99881 * 0.02562 * 1 2 3 19 19 H 1.07995 * 120.13091 * 0.02562 * 10 9 7 20 20 H 0.96696 * 113.99493 * 90.00237 * 12 11 10 21 21 H 1.08005 * 120.06853 * 179.76797 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0964 1.6963 -1.2126 5 1 1.2777 2.7464 -0.0006 6 1 3.0964 1.6964 1.2124 7 6 2.0080 -1.2117 0.0005 8 1 3.0516 -1.2328 -0.2766 9 6 1.3491 -2.4077 0.3637 10 6 0.2203 -2.3669 1.2032 11 6 -0.4163 -3.5401 1.5515 12 8 -1.5067 -3.5052 2.3627 13 6 0.0601 -4.7621 1.0780 14 9 -0.5652 -5.9076 1.4274 15 6 1.1703 -4.8079 0.2450 16 35 1.7994 -6.4723 -0.3952 17 6 1.8177 -3.6467 -0.1125 18 1 -0.4850 0.8400 -0.0004 19 1 -0.1466 -1.4208 1.5726 20 1 -2.3459 -3.4209 1.8899 21 1 2.6831 -3.6862 -0.7574 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216658536.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:32 Heat of formation + Delta-G solvation = -78.358258 kcal Electronic energy + Delta-G solvation = -11967.439169 eV Core-core repulsion = 9382.710937 eV Total energy + Delta-G solvation = -2584.728232 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 259.959 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.64175 -38.22226 -35.99063 -33.83336 -30.94520 -29.22983 -27.91428 -25.38478 -21.52620 -21.12356 -18.04248 -16.74206 -16.23682 -15.77258 -15.02557 -14.61703 -13.91956 -13.26516 -12.85360 -12.56595 -12.17280 -11.67468 -11.46164 -11.27804 -11.13153 -10.59444 -10.18449 -9.93641 -9.61093 -9.54820 -9.28014 -7.67096 -7.58321 -7.07035 -4.68576 2.25522 2.29321 2.40244 2.92377 2.94073 2.98477 3.72522 4.14586 5.02123 5.19327 5.51766 6.17342 6.53050 6.56275 6.81840 6.89821 7.20275 7.43812 7.49166 7.67116 8.07102 8.41674 8.48798 8.58944 9.86650 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.031838 B = 0.007872 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.245502 B = 3556.245473 C = 4353.860423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.074 3.926 3 Si 0.917 3.083 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.446 4.446 8 H 0.088 0.912 9 C 0.115 3.885 10 C -0.155 4.155 11 C 0.095 3.905 12 O -0.499 6.499 13 C -0.044 4.044 14 F -0.153 7.153 15 C -0.065 4.065 16 Br -0.084 7.084 17 C -0.183 4.183 18 H 0.288 0.712 19 H 0.138 0.862 20 H 0.379 0.621 21 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.047 -3.711 -1.161 4.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.474 4.474 8 H 0.106 0.894 9 C 0.111 3.889 10 C -0.175 4.175 11 C 0.050 3.950 12 O -0.308 6.308 13 C -0.066 4.066 14 F -0.132 7.132 15 C -0.144 4.144 16 Br 0.001 6.999 17 C -0.204 4.204 18 H 0.099 0.901 19 H 0.156 0.844 20 H 0.232 0.768 21 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.467 -4.263 -0.951 4.608 hybrid contribution -0.363 0.943 -0.242 1.039 sum 1.104 -3.320 -1.194 3.697 Atomic orbital electron populations 1.69773 1.07771 1.30235 1.32976 1.26010 0.94876 1.01862 0.91857 0.86201 0.80101 0.79323 0.80319 1.18673 1.20064 1.18474 1.19581 0.98211 0.90572 1.39023 0.89424 1.17426 0.90766 0.91837 0.88871 1.21601 0.99837 0.96327 0.99734 1.18190 0.90891 0.90943 0.95008 1.84767 1.15550 1.96003 1.34447 1.17261 0.99051 0.81610 1.08724 1.91333 1.82069 1.48236 1.91557 1.21291 0.98987 0.90868 1.03298 1.96472 1.88207 1.27620 1.87632 1.20906 1.03450 0.90397 1.05677 0.90129 0.84396 0.76767 0.86541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.38 10.96 55.55 0.61 -17.77 14 2 C 0.07 1.68 5.14 -17.34 -0.09 1.59 14 3 Si 0.92 17.02 29.59 -169.99 -5.03 11.99 14 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 14 5 H -0.28 -5.01 7.11 56.52 0.40 -4.60 14 6 H -0.26 -4.84 7.11 56.52 0.40 -4.44 14 7 C -0.45 -10.71 9.04 -37.79 -0.34 -11.05 14 8 H 0.09 1.99 7.90 -52.49 -0.41 1.58 14 9 C 0.12 2.84 5.57 -106.84 -0.59 2.24 14 10 C -0.15 -3.79 8.61 -38.75 -0.33 -4.13 14 11 C 0.10 2.24 6.70 -39.24 -0.26 1.98 14 12 O -0.50 -10.47 13.36 -19.58 -0.26 -10.73 14 13 C -0.04 -1.04 7.30 -38.90 -0.28 -1.32 14 14 F -0.15 -3.52 16.55 2.25 0.04 -3.48 14 15 C -0.06 -1.47 6.22 -39.55 -0.25 -1.71 14 16 Br -0.08 -1.61 33.26 -68.01 -2.26 -3.87 14 17 C -0.18 -4.23 9.52 -38.84 -0.37 -4.60 14 18 H 0.29 6.12 8.30 -40.82 -0.34 5.78 14 19 H 0.14 3.45 6.18 -52.49 -0.32 3.12 14 20 H 0.38 6.10 9.06 45.56 0.41 6.52 14 21 H 0.12 2.50 8.06 -52.48 -0.42 2.08 14 LS Contribution 222.64 15.07 3.36 3.36 Total: -1.00 -25.92 222.64 -5.96 -31.88 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 0.12 Total: 5.62 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -2.52 Total: -17.00 kcal Atomic # 7 Polarization: -18.38 SS G_CDS: 0.61 Total: -17.77 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -0.26 Total: -10.73 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.04 Total: -3.48 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.99 kcal Atomic # 35 Polarization: -1.61 SS G_CDS: -2.26 Total: -3.87 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -25.92 -5.96 -31.88 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216658536.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.479 kcal (2) G-P(sol) polarization free energy of solvation -25.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds