Wall clock time and date at job start Mon Mar 30 2020 06:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86801 * 119.99889 * 2 1 4 4 H 1.48498 * 109.46671 * 269.99491 * 3 2 1 5 5 H 1.48493 * 109.47113 * 29.99635 * 3 2 1 6 6 H 1.48507 * 109.47014 * 149.99684 * 3 2 1 7 7 C 1.39927 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00022 * 197.91611 * 7 2 1 9 9 C 1.41352 * 119.99733 * 17.91180 * 7 2 1 10 10 C 1.40692 * 120.19603 * 204.49528 * 9 7 2 11 11 C 1.38051 * 119.75583 * 179.97438 * 10 9 7 12 12 O 1.35913 * 119.92092 * 180.02562 * 11 10 9 13 13 C 1.39230 * 120.15328 * 0.27631 * 11 10 9 14 14 Br 1.89099 * 119.80122 * 179.70231 * 13 11 10 15 15 C 1.38865 * 120.39956 * 359.45277 * 13 11 10 16 16 F 1.35093 * 119.87730 * 180.29757 * 15 13 11 17 17 C 1.37845 * 120.23682 * 0.54393 * 15 13 11 18 18 H 0.96994 * 120.00367 * 0.02562 * 1 2 3 19 19 H 1.07992 * 120.11886 * 0.02562 * 10 9 7 20 20 H 0.96696 * 113.99931 * 90.00223 * 12 11 10 21 21 H 1.08008 * 120.07691 * 179.74977 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4398 2.6527 0.6999 6 1 3.5399 1.4402 0.7001 7 6 2.0081 -1.2118 0.0005 8 1 3.0488 -1.2343 0.2883 9 6 1.3527 -2.4064 -0.3754 10 6 1.8254 -3.6484 0.0866 11 6 1.1780 -4.8095 -0.2859 12 8 1.6315 -6.0110 0.1589 13 6 0.0648 -4.7527 -1.1202 14 35 -0.8093 -6.3499 -1.6309 15 6 -0.4106 -3.5300 -1.5754 16 9 -1.4951 -3.4868 -2.3797 17 6 0.2232 -2.3605 -1.2137 18 1 -0.4850 0.8400 -0.0004 19 1 2.6909 -3.6932 0.7308 20 1 1.2391 -6.2941 0.9961 21 1 -0.1463 -1.4112 -1.5725 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216658596.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:20 Heat of formation + Delta-G solvation = -94.411620 kcal Electronic energy + Delta-G solvation = -11962.217615 eV Core-core repulsion = 9376.793257 eV Total energy + Delta-G solvation = -2585.424358 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 259.959 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.72188 -40.06171 -37.63701 -35.35084 -32.70259 -30.63763 -29.98737 -27.06509 -23.34817 -22.83378 -20.13063 -18.42113 -17.49348 -17.28935 -16.57200 -16.43968 -16.39760 -15.36857 -14.73280 -14.36451 -13.60858 -13.34837 -12.87974 -12.83388 -12.34938 -12.26303 -11.99434 -11.63125 -11.45487 -11.02178 -10.92942 -9.44374 -9.35078 -8.84460 -6.62018 0.46368 0.64719 1.01162 1.39921 1.47007 1.55367 2.14413 2.40839 3.18894 3.38252 3.84181 4.37889 4.69718 4.84028 5.08579 5.26551 5.31838 5.50791 5.75140 5.96111 6.34703 6.58234 6.65101 6.94694 8.10167 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.048054 B = 0.007166 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.534034 B = 3906.138335 C = 4407.933205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.035 3.965 3 Si 0.992 3.008 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.250 1.250 7 C -0.461 4.461 8 H 0.099 0.901 9 C 0.122 3.878 10 C -0.260 4.260 11 C 0.187 3.813 12 O -0.495 6.495 13 C -0.291 4.291 14 Br -0.059 7.059 15 C 0.139 3.861 16 F -0.151 7.151 17 C -0.228 4.228 18 H 0.298 0.702 19 H 0.127 0.873 20 H 0.403 0.597 21 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.194 -4.194 0.524 4.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.184 4.184 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.174 1.174 7 C -0.487 4.487 8 H 0.117 0.883 9 C 0.118 3.882 10 C -0.280 4.280 11 C 0.140 3.860 12 O -0.307 6.307 13 C -0.372 4.372 14 Br 0.024 6.976 15 C 0.118 3.882 16 F -0.130 7.130 17 C -0.249 4.249 18 H 0.109 0.891 19 H 0.144 0.856 20 H 0.261 0.739 21 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.057 -4.633 -0.170 4.637 hybrid contribution -0.302 0.925 0.341 1.031 sum -0.360 -3.708 0.172 3.730 Atomic orbital electron populations 1.69844 1.09427 1.31905 1.31181 1.26999 0.95508 1.05254 0.90647 0.85035 0.79233 0.74848 0.79778 1.18635 1.19070 1.17355 1.20095 0.99094 0.91425 1.38134 0.88326 1.17579 0.89870 0.93254 0.87465 1.21396 1.06222 0.90966 1.09446 1.17561 0.90170 0.85048 0.93208 1.84695 1.67833 1.33697 1.44479 1.21507 1.06568 0.89830 1.19309 1.96338 1.78435 1.30867 1.91933 1.17254 0.85013 0.93628 0.92289 1.91378 1.52764 1.97386 1.71426 1.21224 1.02444 0.95469 1.05801 0.89063 0.85554 0.73865 0.85975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.12 10.96 21.82 0.24 -37.88 14 2 C 0.04 1.58 5.14 85.25 0.44 2.02 14 3 Si 0.99 33.66 29.60 68.60 2.03 35.69 14 4 H -0.26 -8.78 7.11 99.48 0.71 -8.07 14 5 H -0.27 -8.63 7.11 99.48 0.71 -7.93 14 6 H -0.25 -8.13 7.11 99.48 0.71 -7.42 14 7 C -0.46 -22.08 9.05 23.45 0.21 -21.87 14 8 H 0.10 4.41 7.91 -2.91 -0.02 4.39 14 9 C 0.12 6.10 5.57 -21.31 -0.12 5.98 14 10 C -0.26 -11.82 9.72 22.83 0.22 -11.60 14 11 C 0.19 8.06 6.68 22.46 0.15 8.21 14 12 O -0.49 -17.79 12.81 -92.58 -1.19 -18.98 14 13 C -0.29 -13.13 6.27 22.66 0.14 -12.99 14 14 Br -0.06 -2.26 32.70 -20.37 -0.67 -2.93 14 15 C 0.14 6.80 7.25 22.33 0.16 6.96 14 16 F -0.15 -7.14 16.71 44.97 0.75 -6.39 14 17 C -0.23 -11.70 8.67 22.78 0.20 -11.50 14 18 H 0.30 12.70 8.30 -92.71 -0.77 11.93 14 19 H 0.13 5.27 8.06 -2.91 -0.02 5.25 14 20 H 0.40 10.58 9.06 -74.06 -0.67 9.91 14 21 H 0.12 6.49 6.15 -2.91 -0.02 6.47 14 Total: -1.00 -53.95 221.91 3.19 -50.76 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.62 Total: 14.52 kcal Atomic # 6 Polarization: -36.21 SS G_CDS: 1.40 Total: -34.80 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.24 Total: -37.88 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -1.19 Total: -18.98 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 0.75 Total: -6.39 kcal Atomic # 14 Polarization: 33.66 SS G_CDS: 2.03 Total: 35.69 kcal Atomic # 35 Polarization: -2.26 SS G_CDS: -0.67 Total: -2.93 kcal Total: -53.95 3.19 -50.76 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216658596.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.651 kcal (2) G-P(sol) polarization free energy of solvation -53.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds