Wall clock time and date at job start Mon Mar 30 2020 06:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86801 * 120.00321 * 2 1 4 4 H 1.48497 * 109.46990 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47149 * 299.99825 * 3 2 1 6 6 H 1.48503 * 109.46961 * 59.99905 * 3 2 1 7 7 C 1.39936 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00036 * 160.72340 * 7 2 1 9 9 C 1.41247 * 119.99745 * 341.00137 * 7 2 1 10 10 C 1.41038 * 120.24495 * 322.54385 * 9 7 2 11 11 F 1.35099 * 120.10330 * 0.02562 * 10 9 7 12 12 C 1.37911 * 119.78948 * 179.71346 * 10 9 7 13 13 C 1.38506 * 120.29423 * 0.56556 * 12 10 9 14 14 C 1.39093 * 120.50258 * 359.70881 * 13 12 10 15 15 O 1.35959 * 119.90301 * 180.02562 * 14 13 12 16 16 C 1.38165 * 120.20106 * 0.02562 * 14 13 12 17 17 Br 1.89091 * 120.15152 * 180.02562 * 16 14 13 18 18 H 0.97005 * 119.99979 * 0.02562 * 1 2 3 19 19 H 1.07997 * 119.84801 * 180.24794 * 12 10 9 20 20 H 1.07998 * 119.74826 * 179.68972 * 13 12 10 21 21 H 0.96697 * 113.99853 * 269.97746 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.7026 1.3462 0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8839 2.3964 1.2125 7 6 2.0082 -1.2119 0.0005 8 1 3.0428 -1.2382 -0.3082 9 6 1.3596 -2.4016 0.3993 10 6 0.4275 -2.3821 1.4576 11 9 0.1502 -1.2238 2.0951 12 6 -0.2047 -3.5482 1.8353 13 6 0.0806 -4.7389 1.1879 14 6 1.0019 -4.7732 0.1464 15 8 1.2723 -5.9486 -0.4810 16 6 1.6433 -3.6162 -0.2525 17 35 2.8951 -3.6643 -1.6689 18 1 -0.4850 0.8401 -0.0004 19 1 -0.9215 -3.5336 2.6429 20 1 -0.4160 -5.6477 1.4942 21 1 1.9988 -6.4483 -0.0840 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216658657.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:18 Heat of formation + Delta-G solvation = -69.805360 kcal Electronic energy + Delta-G solvation = -12238.745910 eV Core-core repulsion = 9654.388560 eV Total energy + Delta-G solvation = -2584.357350 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 259.959 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.14541 -38.30273 -35.66293 -33.58286 -31.04555 -29.15053 -27.44074 -25.37884 -21.31776 -21.04549 -18.21799 -16.56349 -15.90344 -15.53116 -14.95828 -14.43179 -13.82150 -13.15029 -12.73012 -12.36541 -12.04621 -11.57961 -11.39411 -11.19595 -10.90180 -10.47376 -10.26027 -9.62496 -9.51158 -9.20413 -8.92352 -7.62520 -7.21736 -6.97453 -4.64378 2.26463 2.44453 3.00282 3.03148 3.05366 3.10402 3.86380 4.31501 5.01636 5.12685 5.79567 6.02835 6.18911 6.72385 6.94379 6.99493 7.21046 7.26931 7.45669 7.74470 8.19639 8.33228 8.56761 8.60610 10.01536 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.024413 B = 0.012777 C = 0.008715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.654926 B = 2190.959536 C = 3211.921147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.079 3.921 3 Si 0.913 3.087 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.449 4.449 8 H 0.097 0.903 9 C 0.113 3.887 10 C 0.041 3.959 11 F -0.138 7.138 12 C -0.114 4.114 13 C -0.235 4.235 14 C 0.143 3.857 15 O -0.499 6.499 16 C -0.191 4.191 17 Br -0.080 7.080 18 H 0.287 0.713 19 H 0.111 0.889 20 H 0.112 0.888 21 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.634 -4.060 0.115 5.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.477 4.477 8 H 0.115 0.885 9 C 0.108 3.892 10 C 0.020 3.980 11 F -0.116 7.116 12 C -0.134 4.134 13 C -0.256 4.256 14 C 0.097 3.903 15 O -0.307 6.307 16 C -0.272 4.272 17 Br 0.005 6.995 18 H 0.098 0.902 19 H 0.129 0.871 20 H 0.130 0.870 21 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 3.407 -3.696 -0.783 5.087 hybrid contribution 0.176 0.811 0.710 1.092 sum 3.584 -2.885 -0.072 4.601 Atomic orbital electron populations 1.69773 1.07929 1.30307 1.30942 1.25876 0.94688 1.01552 0.92207 0.86161 0.81102 0.80404 0.78703 1.18018 1.19752 1.19460 1.19590 0.99295 0.90510 1.38259 0.88529 1.17225 0.90497 0.91990 0.89490 1.17712 1.03450 0.80924 0.95920 1.91348 1.92587 1.47717 1.79985 1.20554 1.00058 0.92053 1.00703 1.20298 1.06599 0.97535 1.01138 1.17891 0.95960 0.84027 0.92448 1.84793 1.56442 1.32494 1.57016 1.21712 1.07362 0.96323 1.01819 1.96294 1.57300 1.98953 1.46990 0.90225 0.87119 0.87009 0.76980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.93 11.13 55.55 0.62 -19.31 14 2 C 0.08 1.97 4.53 -17.33 -0.08 1.89 14 3 Si 0.91 18.72 29.60 -169.99 -5.03 13.69 14 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 14 5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 14 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 14 7 C -0.45 -11.60 8.11 -37.80 -0.31 -11.91 14 8 H 0.10 2.43 7.31 -52.49 -0.38 2.04 14 9 C 0.11 2.93 5.39 -106.75 -0.58 2.36 14 10 C 0.04 1.05 6.68 -38.64 -0.26 0.79 14 11 F -0.14 -3.59 14.31 2.25 0.03 -3.56 14 12 C -0.11 -2.53 10.00 -39.60 -0.40 -2.93 14 13 C -0.24 -4.96 9.98 -39.17 -0.39 -5.35 14 14 C 0.14 3.14 6.68 -39.29 -0.26 2.87 14 15 O -0.50 -9.46 12.82 -19.61 -0.25 -9.71 14 16 C -0.19 -4.57 6.29 -38.67 -0.24 -4.81 14 17 Br -0.08 -1.69 31.74 -68.01 -2.16 -3.85 14 18 H 0.29 6.77 8.30 -40.82 -0.34 6.43 14 19 H 0.11 2.16 8.06 -52.49 -0.42 1.74 14 20 H 0.11 2.05 8.06 -52.49 -0.42 1.63 14 21 H 0.38 5.29 9.06 45.56 0.41 5.70 14 LS Contribution 219.36 15.07 3.31 3.31 Total: -1.00 -27.93 219.36 -5.95 -33.87 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: 0.05 Total: 2.65 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -2.51 Total: -17.10 kcal Atomic # 7 Polarization: -19.93 SS G_CDS: 0.62 Total: -19.31 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.25 Total: -9.71 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.03 Total: -3.56 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Atomic # 35 Polarization: -1.69 SS G_CDS: -2.16 Total: -3.85 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -27.93 -5.95 -33.87 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216658657.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.931 kcal (2) G-P(sol) polarization free energy of solvation -27.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds