Wall clock time and date at job start Mon Mar 30 2020 06:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86792 * 120.00475 * 2 1 4 4 H 1.48505 * 109.47413 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47218 * 299.99752 * 3 2 1 6 6 H 1.48504 * 109.47291 * 59.99783 * 3 2 1 7 7 C 1.39929 * 119.99395 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99776 * 200.20892 * 7 2 1 9 9 C 1.41268 * 120.00224 * 20.48973 * 7 2 1 10 10 C 1.40877 * 120.24467 * 36.25386 * 9 7 2 11 11 F 1.35105 * 120.17648 * 359.97438 * 10 9 7 12 12 C 1.38361 * 119.64893 * 180.02562 * 10 9 7 13 13 O 1.35980 * 119.93358 * 179.97438 * 12 10 9 14 14 C 1.38977 * 120.14432 * 0.02562 * 12 10 9 15 15 C 1.38595 * 120.49779 * 359.97438 * 14 12 10 16 16 C 1.37701 * 120.35277 * 359.71342 * 15 14 12 17 17 Br 1.89103 * 120.07677 * 180.30052 * 16 15 14 18 18 H 0.96999 * 119.99505 * 3.51089 * 1 2 3 19 19 H 0.96700 * 113.99882 * 89.99057 * 13 12 10 20 20 H 1.07991 * 119.75092 * 180.02562 * 14 12 10 21 21 H 1.08004 * 119.82126 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 3.7027 1.3462 0.0006 5 1 1.8841 2.3963 -1.2125 6 1 1.8840 2.3964 1.2125 7 6 2.0081 -1.2119 0.0005 8 1 3.0382 -1.2406 0.3237 9 6 1.3687 -2.3968 -0.4272 10 6 0.4427 -2.3601 -1.4882 11 9 0.1603 -1.1906 -2.1030 12 6 -0.1767 -3.5279 -1.8967 13 8 -1.0718 -3.4991 -2.9200 14 6 0.1131 -4.7303 -1.2629 15 6 1.0231 -4.7733 -0.2184 16 6 1.6563 -3.6245 0.2006 17 35 2.9028 -3.6936 1.6209 18 1 -0.4849 0.8385 -0.0514 19 1 -0.6769 -3.6359 -3.7920 20 1 -0.3737 -5.6380 -1.5872 21 1 1.2399 -5.7136 0.2667 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216658719.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:36 Heat of formation + Delta-G solvation = -89.443667 kcal Electronic energy + Delta-G solvation = -12290.062226 eV Core-core repulsion = 9704.853295 eV Total energy + Delta-G solvation = -2585.208931 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 259.959 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.05931 -39.86064 -37.68074 -35.41693 -32.23773 -31.53993 -29.13703 -27.19652 -23.23915 -22.72462 -19.80667 -18.73839 -17.58203 -17.07792 -16.80092 -16.33529 -15.52145 -14.94363 -14.70442 -14.04183 -13.81909 -13.36586 -13.27709 -12.77961 -12.65947 -12.09836 -12.06098 -11.28122 -11.18289 -10.97251 -10.70136 -9.39575 -9.08900 -8.79321 -6.54528 0.42697 0.72911 1.21870 1.36318 1.42786 1.51803 2.17367 2.53391 3.15991 3.45448 4.00371 4.33999 4.60893 4.90519 5.13813 5.30585 5.37605 5.62839 5.66195 5.94774 6.24954 6.60462 6.71925 6.97356 8.21037 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.017866 B = 0.014935 C = 0.008444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.835359 B = 1874.330579 C = 3315.050217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.040 3.960 3 Si 0.974 3.026 4 H -0.250 1.250 5 H -0.268 1.268 6 H -0.264 1.264 7 C -0.477 4.477 8 H 0.096 0.904 9 C 0.086 3.914 10 C -0.020 4.020 11 F -0.149 7.149 12 C 0.095 3.905 13 O -0.506 6.506 14 C -0.229 4.229 15 C -0.052 4.052 16 C -0.188 4.188 17 Br -0.066 7.066 18 H 0.291 0.709 19 H 0.401 0.599 20 H 0.147 0.853 21 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.066 -5.099 -0.138 6.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.179 4.179 3 Si 0.794 3.206 4 H -0.173 1.173 5 H -0.193 1.193 6 H -0.188 1.188 7 C -0.505 4.505 8 H 0.114 0.886 9 C 0.081 3.919 10 C -0.042 4.042 11 F -0.128 7.128 12 C 0.050 3.950 13 O -0.318 6.318 14 C -0.250 4.250 15 C -0.072 4.072 16 C -0.268 4.268 17 Br 0.019 6.981 18 H 0.101 0.899 19 H 0.258 0.742 20 H 0.165 0.835 21 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.899 -4.834 0.879 6.272 hybrid contribution -0.012 0.998 -0.873 1.326 sum 3.887 -3.837 0.006 5.462 Atomic orbital electron populations 1.69846 1.09372 1.31468 1.32109 1.26690 0.95228 1.04616 0.91342 0.85254 0.79989 0.76442 0.78871 1.17346 1.19327 1.18818 1.19767 0.99810 0.91846 1.39062 0.88591 1.17594 0.90935 0.93583 0.89773 1.18482 1.05760 0.80986 0.98977 1.91278 1.92765 1.47338 1.81378 1.18549 0.91656 0.92078 0.92766 1.84746 1.34255 1.95072 1.17728 1.20801 1.05282 0.96490 1.02402 1.20804 0.94300 0.96660 0.95432 1.21655 1.07282 0.96256 1.01633 1.96299 1.57615 1.98756 1.45473 0.89854 0.74185 0.83495 0.83834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.29 11.13 21.83 0.24 -43.04 14 2 C 0.04 2.01 4.49 85.25 0.38 2.39 14 3 Si 0.97 38.76 29.61 68.60 2.03 40.79 14 4 H -0.25 -9.56 7.11 99.48 0.71 -8.86 14 5 H -0.27 -10.50 7.11 99.48 0.71 -9.80 14 6 H -0.26 -9.99 7.11 99.48 0.71 -9.29 14 7 C -0.48 -24.92 8.13 23.42 0.19 -24.73 14 8 H 0.10 4.84 7.29 -2.91 -0.02 4.82 14 9 C 0.09 4.48 5.40 -21.25 -0.11 4.36 14 10 C -0.02 -1.05 6.70 22.95 0.15 -0.90 14 11 F -0.15 -8.17 14.09 44.97 0.63 -7.54 14 12 C 0.10 4.26 6.70 22.48 0.15 4.42 14 13 O -0.51 -19.92 13.36 -93.33 -1.25 -21.17 14 14 C -0.23 -8.99 9.98 22.53 0.22 -8.77 14 15 C -0.05 -2.05 9.75 22.23 0.22 -1.83 14 16 C -0.19 -8.55 6.28 22.78 0.14 -8.40 14 17 Br -0.07 -2.60 32.28 -20.37 -0.66 -3.26 14 18 H 0.29 14.35 8.30 -92.71 -0.77 13.58 14 19 H 0.40 11.16 9.06 -74.06 -0.67 10.49 14 20 H 0.15 4.71 8.06 -2.92 -0.02 4.69 14 21 H 0.14 4.65 8.06 -2.91 -0.02 4.63 14 Total: -1.00 -60.37 219.98 2.96 -57.41 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.61 Total: 10.27 kcal Atomic # 6 Polarization: -34.81 SS G_CDS: 1.35 Total: -33.46 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.24 Total: -43.04 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -1.25 Total: -21.17 kcal Atomic # 9 Polarization: -8.17 SS G_CDS: 0.63 Total: -7.54 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Atomic # 35 Polarization: -2.60 SS G_CDS: -0.66 Total: -3.26 kcal Total: -60.37 2.96 -57.41 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216658719.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.033 kcal (2) G-P(sol) polarization free energy of solvation -60.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds