Wall clock time and date at job start Mon Mar 30 2020 07:03:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35946 * 117.00300 * 2 1
4 4 C 1.38699 * 120.04455 * 359.97438 * 3 2 1
5 5 C 1.38145 * 119.96822 * 180.02562 * 4 3 2
6 6 C 1.50701 * 119.96873 * 180.02562 * 5 4 3
7 7 C 1.50696 * 109.47535 * 100.00101 * 6 5 4
8 8 H 1.08008 * 119.99300 * 0.02562 * 7 6 5
9 9 C 1.37875 * 120.00535 * 179.97438 * 7 6 5
10 10 N 1.31517 * 119.99827 * 0.02562 * 9 7 6
11 11 Si 1.86803 * 120.00146 * 179.97438 * 9 7 6
12 12 H 1.48498 * 109.46877 * 90.00056 * 11 9 7
13 13 H 1.48493 * 109.47032 * 210.00470 * 11 9 7
14 14 H 1.48507 * 109.47094 * 330.00565 * 11 9 7
15 15 C 1.38376 * 120.06462 * 0.02639 * 5 4 3
16 16 Cl 1.73607 * 119.95386 * 179.97438 * 15 5 4
17 17 C 1.38349 * 120.09480 * 359.69844 * 15 5 4
18 18 C 1.38255 * 120.02578 * 0.55614 * 17 15 5
19 19 Cl 1.73599 * 120.03361 * 179.74886 * 18 17 15
20 20 H 1.09008 * 109.47056 * 59.99594 * 1 2 3
21 21 H 1.08996 * 109.47587 * 179.97438 * 1 2 3
22 22 H 1.08999 * 109.46848 * 300.00046 * 1 2 3
23 23 H 1.07997 * 120.01504 * 359.97438 * 4 3 2
24 24 H 1.08998 * 109.47464 * 220.00422 * 6 5 4
25 25 H 1.09002 * 109.47365 * 340.00269 * 6 5 4
26 26 H 0.96998 * 119.99483 * 179.97438 * 10 9 7
27 27 H 1.07992 * 119.98640 * 180.29847 * 17 15 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2113 0.0000
4 6 1.2918 2.3751 -0.0005
5 6 1.9207 3.6051 -0.0011
6 6 1.1010 4.8697 -0.0011
7 6 1.0353 5.4258 1.3980
8 1 1.5373 4.9148 2.2063
9 6 0.3352 6.5874 1.6460
10 7 -0.2757 7.2099 0.6616
11 14 0.2532 7.2764 3.3804
12 1 1.3889 8.2083 3.5970
13 1 -1.0274 8.0055 3.5634
14 1 0.3331 6.1627 4.3597
15 6 3.3026 3.6772 -0.0016
16 17 4.0899 5.2245 -0.0030
17 6 4.0577 2.5180 0.0047
18 6 3.4324 1.2849 -0.0001
19 17 4.3797 -0.1698 0.0012
20 1 -0.3633 0.5139 -0.8900
21 1 -0.3634 -1.0276 -0.0005
22 1 -0.3633 0.5138 0.8900
23 1 0.2133 2.3198 -0.0014
24 1 1.5636 5.6026 -0.6620
25 1 0.0928 4.6492 -0.3521
26 1 -0.7685 8.0269 0.8362
27 1 5.1360 2.5763 0.0091
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000216659613.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:03:16
Heat of formation + Delta-G solvation = -38.608292 kcal
Electronic energy + Delta-G solvation = -14865.398512 eV
Core-core repulsion = 12060.991124 eV
Total energy + Delta-G solvation = -2804.407388 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 260.011 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-39.95183 -37.56551 -36.29457 -35.48025 -33.43860 -31.35929 -29.70888 -27.82754
-26.54917 -23.49215 -22.08396 -20.85551 -17.56648 -16.47384 -16.35994 -16.15176
-15.63783 -14.65226 -14.12300 -13.85576 -13.35594 -13.23171 -12.39983 -12.22433
-12.07437 -11.67726 -11.33732 -11.24650 -11.19538 -10.76342 -10.64138 -10.60757
-10.25367 -10.12561 -9.63460 -9.46690 -8.47661 -8.36608 -7.64993 -6.09624
-4.12711 1.48681 1.55267 2.30371 2.91103 3.28251 3.34682 3.37061
3.38383 3.89615 4.41411 5.00452 5.12257 5.26082 5.27710 5.40527
5.52104 5.57410 5.70271 5.96846 6.08731 6.55115 6.64137 6.85564
7.38735 7.43693 7.57784 7.84899 8.19707 8.89816 9.50758 11.00727
Molecular weight = 260.01amu
Principal moments of inertia in cm(-1)
A = 0.023063 B = 0.006760 C = 0.005779
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1213.784684 B = 4141.027196 C = 4843.887545
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.309 6.309
3 C 0.138 3.862
4 C -0.193 4.193
5 C 0.018 3.982
6 C 0.045 3.955
7 C -0.505 4.505
8 H 0.057 0.943
9 C 0.063 3.937
10 N -0.892 5.892
11 Si 0.893 3.107
12 H -0.279 1.279
13 H -0.286 1.286
14 H -0.273 1.273
15 C -0.062 4.062
16 Cl -0.053 7.053
17 C -0.069 4.069
18 C -0.084 4.084
19 Cl -0.069 7.069
20 H 0.057 0.943
21 H 0.098 0.902
22 H 0.060 0.940
23 H 0.142 0.858
24 H 0.045 0.955
25 H 0.031 0.969
26 H 0.262 0.738
27 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.420 -11.358 -2.335 12.409
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.223 6.223
3 C 0.091 3.909
4 C -0.212 4.212
5 C 0.017 3.983
6 C 0.008 3.992
7 C -0.543 4.543
8 H 0.075 0.925
9 C -0.139 4.139
10 N -0.531 5.531
11 Si 0.721 3.279
12 H -0.205 1.205
13 H -0.212 1.212
14 H -0.198 1.198
15 C -0.089 4.089
16 Cl -0.024 7.024
17 C -0.089 4.089
18 C -0.111 4.111
19 Cl -0.041 7.041
20 H 0.076 0.924
21 H 0.116 0.884
22 H 0.078 0.922
23 H 0.159 0.841
24 H 0.064 0.936
25 H 0.050 0.950
26 H 0.072 0.928
27 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges 4.535 -11.390 -2.373 12.488
hybrid contribution -0.180 0.591 0.977 1.157
sum 4.355 -10.799 -1.396 11.728
Atomic orbital electron populations
1.23094 0.78195 1.03668 1.02005 1.86093 1.21478 1.26136 1.88548
1.18706 0.90320 0.85083 0.96748 1.21116 1.00465 0.90333 1.09304
1.20565 0.92221 0.97485 0.88040 1.18499 0.94061 0.87794 0.98821
1.20856 1.32505 1.08445 0.92467 0.92455 1.24927 0.95302 0.96578
0.97096 1.69945 1.33647 1.18259 1.31259 0.86560 0.77469 0.79247
0.84617 1.20493 1.21189 1.19791 1.20509 0.92569 0.86605 1.09226
1.98349 1.79706 1.27487 1.96883 1.20626 1.00184 0.88698 0.99376
1.19675 0.88339 0.87750 1.15360 1.98320 1.71920 1.36384 1.97456
0.92392 0.88384 0.92176 0.84065 0.93649 0.95032 0.92791 0.84200
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.29 9.81 101.05 0.99 1.28 15
2 O -0.31 -4.66 9.96 -19.57 -0.19 -4.85 15
3 C 0.14 2.33 6.68 -39.20 -0.26 2.06 15
4 C -0.19 -3.50 8.66 -39.45 -0.34 -3.84 15
5 C 0.02 0.37 5.08 -104.60 -0.53 -0.16 15
6 C 0.04 1.09 4.57 -29.04 -0.13 0.96 15
7 C -0.50 -13.42 8.86 -34.44 -0.31 -13.73 15
8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 15
9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15
10 N -0.89 -25.42 13.29 55.43 0.74 -24.68 15
11 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 15
12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15
13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15
14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15
15 C -0.06 -1.19 6.30 -39.49 -0.25 -1.44 15
16 Cl -0.05 -1.03 27.31 -51.86 -1.42 -2.44 15
17 C -0.07 -1.16 9.61 -39.53 -0.38 -1.54 15
18 C -0.08 -1.39 6.33 -39.37 -0.25 -1.64 15
19 Cl -0.07 -1.02 28.50 -51.86 -1.48 -2.49 15
20 H 0.06 0.61 7.66 -51.92 -0.40 0.21 15
21 H 0.10 0.83 8.14 -51.93 -0.42 0.40 15
22 H 0.06 0.67 7.66 -51.93 -0.40 0.27 15
23 H 0.14 2.35 6.28 -52.49 -0.33 2.02 15
24 H 0.05 1.17 7.35 -51.93 -0.38 0.79 15
25 H 0.03 0.79 8.00 -51.93 -0.42 0.38 15
26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 15
27 H 0.14 2.01 8.06 -52.49 -0.42 1.59 15
LS Contribution 270.47 15.07 4.08 4.08
Total: -1.00 -28.44 270.47 -7.16 -35.60
By element:
Atomic # 1 Polarization: -2.54 SS G_CDS: -2.31 Total: -4.85 kcal
Atomic # 6 Polarization: -14.88 SS G_CDS: -1.56 Total: -16.44 kcal
Atomic # 7 Polarization: -25.42 SS G_CDS: 0.74 Total: -24.68 kcal
Atomic # 8 Polarization: -4.66 SS G_CDS: -0.19 Total: -4.85 kcal
Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal
Atomic # 17 Polarization: -2.04 SS G_CDS: -2.89 Total: -4.94 kcal
Total LS contribution 4.08 Total: 4.08 kcal
Total: -28.44 -7.16 -35.60 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000216659613.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.006 kcal
(2) G-P(sol) polarization free energy of solvation -28.440 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.446 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.602 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.608 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds