Wall clock time and date at job start Mon Mar 30 2020 07:03:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35946 * 117.00300 * 2 1
4 4 C 1.38699 * 120.04455 * 359.97438 * 3 2 1
5 5 C 1.38145 * 119.96822 * 180.02562 * 4 3 2
6 6 C 1.50701 * 119.96873 * 180.02562 * 5 4 3
7 7 C 1.50696 * 109.47535 * 100.00101 * 6 5 4
8 8 H 1.08008 * 119.99300 * 0.02562 * 7 6 5
9 9 C 1.37875 * 120.00535 * 179.97438 * 7 6 5
10 10 N 1.31517 * 119.99827 * 0.02562 * 9 7 6
11 11 Si 1.86803 * 120.00146 * 179.97438 * 9 7 6
12 12 H 1.48498 * 109.46877 * 90.00056 * 11 9 7
13 13 H 1.48493 * 109.47032 * 210.00470 * 11 9 7
14 14 H 1.48507 * 109.47094 * 330.00565 * 11 9 7
15 15 C 1.38376 * 120.06462 * 0.02639 * 5 4 3
16 16 Cl 1.73607 * 119.95386 * 179.97438 * 15 5 4
17 17 C 1.38349 * 120.09480 * 359.69844 * 15 5 4
18 18 C 1.38255 * 120.02578 * 0.55614 * 17 15 5
19 19 Cl 1.73599 * 120.03361 * 179.74886 * 18 17 15
20 20 H 1.09008 * 109.47056 * 59.99594 * 1 2 3
21 21 H 1.08996 * 109.47587 * 179.97438 * 1 2 3
22 22 H 1.08999 * 109.46848 * 300.00046 * 1 2 3
23 23 H 1.07997 * 120.01504 * 359.97438 * 4 3 2
24 24 H 1.08998 * 109.47464 * 220.00422 * 6 5 4
25 25 H 1.09002 * 109.47365 * 340.00269 * 6 5 4
26 26 H 0.96998 * 119.99483 * 179.97438 * 10 9 7
27 27 H 1.07992 * 119.98640 * 180.29847 * 17 15 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2113 0.0000
4 6 1.2918 2.3751 -0.0005
5 6 1.9207 3.6051 -0.0011
6 6 1.1010 4.8697 -0.0011
7 6 1.0353 5.4258 1.3980
8 1 1.5373 4.9148 2.2063
9 6 0.3352 6.5874 1.6460
10 7 -0.2757 7.2099 0.6616
11 14 0.2532 7.2764 3.3804
12 1 1.3889 8.2083 3.5970
13 1 -1.0274 8.0055 3.5634
14 1 0.3331 6.1627 4.3597
15 6 3.3026 3.6772 -0.0016
16 17 4.0899 5.2245 -0.0030
17 6 4.0577 2.5180 0.0047
18 6 3.4324 1.2849 -0.0001
19 17 4.3797 -0.1698 0.0012
20 1 -0.3633 0.5139 -0.8900
21 1 -0.3634 -1.0276 -0.0005
22 1 -0.3633 0.5138 0.8900
23 1 0.2133 2.3198 -0.0014
24 1 1.5636 5.6026 -0.6620
25 1 0.0928 4.6492 -0.3521
26 1 -0.7685 8.0269 0.8362
27 1 5.1360 2.5763 0.0091
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000216659613.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:03:16
Heat of formation + Delta-G solvation = -53.666489 kcal
Electronic energy + Delta-G solvation = -14866.051485 eV
Core-core repulsion = 12060.991124 eV
Total energy + Delta-G solvation = -2805.060361 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 260.011 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-41.26152 -38.88413 -37.57678 -36.94017 -35.33573 -33.06350 -31.05629 -29.32576
-27.89406 -25.33123 -23.41816 -22.38776 -18.91725 -18.42029 -17.75700 -17.52864
-16.77473 -16.55522 -15.43667 -15.13623 -14.80735 -14.72652 -14.13767 -13.77833
-13.50814 -13.09912 -12.97965 -12.72646 -12.46844 -12.41657 -12.35496 -11.98600
-11.82122 -11.73332 -11.32622 -11.23201 -10.55660 -9.81309 -9.05292 -8.16776
-6.26268 0.08791 0.13853 0.97295 1.41462 1.42910 1.48894 1.52595
2.22494 2.37751 2.53344 3.16747 3.70504 3.86465 4.05246 4.34519
4.40488 4.42107 4.57330 4.70322 4.77692 5.03513 5.09952 5.32241
5.45057 5.72173 5.76804 6.14966 6.21648 6.82611 7.40584 8.93305
Molecular weight = 260.01amu
Principal moments of inertia in cm(-1)
A = 0.023063 B = 0.006760 C = 0.005779
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1213.784684 B = 4141.027196 C = 4843.887545
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.016 3.984
2 O -0.313 6.313
3 C 0.144 3.856
4 C -0.194 4.194
5 C -0.008 4.008
6 C 0.056 3.944
7 C -0.509 4.509
8 H 0.052 0.948
9 C 0.014 3.986
10 N -0.926 5.926
11 Si 0.953 3.047
12 H -0.276 1.276
13 H -0.281 1.281
14 H -0.266 1.266
15 C -0.075 4.075
16 Cl -0.062 7.062
17 C -0.059 4.059
18 C -0.085 4.085
19 Cl -0.047 7.047
20 H 0.064 0.936
21 H 0.131 0.869
22 H 0.060 0.940
23 H 0.150 0.850
24 H 0.022 0.978
25 H 0.013 0.987
26 H 0.264 0.736
27 H 0.165 0.835
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.899 -13.031 -1.607 14.014
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 O -0.226 6.226
3 C 0.097 3.903
4 C -0.213 4.213
5 C -0.009 4.009
6 C 0.019 3.981
7 C -0.547 4.547
8 H 0.070 0.930
9 C -0.185 4.185
10 N -0.566 5.566
11 Si 0.778 3.222
12 H -0.202 1.202
13 H -0.207 1.207
14 H -0.191 1.191
15 C -0.102 4.102
16 Cl -0.034 7.034
17 C -0.078 4.078
18 C -0.112 4.112
19 Cl -0.018 7.018
20 H 0.082 0.918
21 H 0.149 0.851
22 H 0.078 0.922
23 H 0.168 0.832
24 H 0.040 0.960
25 H 0.031 0.969
26 H 0.073 0.927
27 H 0.183 0.817
Dipole moment (debyes) X Y Z Total
from point charges 5.015 -13.084 -1.644 14.108
hybrid contribution -0.326 0.947 0.709 1.227
sum 4.688 -12.138 -0.935 13.045
Atomic orbital electron populations
1.23428 0.76107 1.05992 1.02327 1.86106 1.23578 1.24907 1.88002
1.18714 0.90580 0.85318 0.95651 1.21136 1.01095 0.89981 1.09076
1.20283 0.92716 0.96787 0.91144 1.18189 0.93497 0.89189 0.97254
1.21094 1.31818 1.08409 0.93420 0.93007 1.25692 0.95113 0.97027
1.00643 1.70053 1.34623 1.18778 1.33180 0.85629 0.77534 0.78655
0.80395 1.20206 1.20678 1.19066 1.20577 0.92236 0.87069 1.10291
1.98339 1.79684 1.28328 1.97002 1.20807 1.01236 0.87817 0.97967
1.19850 0.88695 0.88589 1.14092 1.98331 1.71250 1.34916 1.97281
0.91759 0.85127 0.92180 0.83211 0.95968 0.96853 0.92716 0.81750
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.31 9.81 113.37 1.11 1.42 15
2 O -0.31 -8.62 9.96 -92.94 -0.93 -9.55 15
3 C 0.14 4.61 6.68 22.52 0.15 4.76 15
4 C -0.19 -6.89 8.66 22.36 0.19 -6.69 15
5 C -0.01 -0.34 5.08 -19.85 -0.10 -0.44 15
6 C 0.06 2.78 4.57 29.10 0.13 2.91 15
7 C -0.51 -27.44 8.86 25.60 0.23 -27.22 15
8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 15
9 C 0.01 0.75 5.46 84.65 0.46 1.22 15
10 N -0.93 -53.66 13.29 21.45 0.28 -53.38 15
11 Si 0.95 43.26 29.54 68.60 2.03 45.29 15
12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15
13 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15
14 H -0.27 -11.69 7.11 99.48 0.71 -10.99 15
15 C -0.07 -2.83 6.30 22.33 0.14 -2.69 15
16 Cl -0.06 -2.41 27.31 -2.72 -0.07 -2.49 15
17 C -0.06 -1.87 9.61 22.30 0.21 -1.66 15
18 C -0.08 -2.62 6.33 22.41 0.14 -2.48 15
19 Cl -0.05 -1.23 28.50 -2.72 -0.08 -1.31 15
20 H 0.06 1.22 7.66 -2.38 -0.02 1.20 15
21 H 0.13 1.75 8.14 -2.39 -0.02 1.73 15
22 H 0.06 1.22 7.66 -2.39 -0.02 1.20 15
23 H 0.15 4.91 6.28 -2.91 -0.02 4.89 15
24 H 0.02 1.19 7.35 -2.39 -0.02 1.17 15
25 H 0.01 0.69 8.00 -2.39 -0.02 0.67 15
26 H 0.26 14.48 8.31 -92.71 -0.77 13.71 15
27 H 0.17 4.30 8.06 -2.91 -0.02 4.28 15
Total: -1.00 -60.19 270.47 5.10 -55.09
By element:
Atomic # 1 Polarization: -3.97 SS G_CDS: 1.19 Total: -2.78 kcal
Atomic # 6 Polarization: -33.56 SS G_CDS: 2.67 Total: -30.88 kcal
Atomic # 7 Polarization: -53.66 SS G_CDS: 0.28 Total: -53.38 kcal
Atomic # 8 Polarization: -8.62 SS G_CDS: -0.93 Total: -9.55 kcal
Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal
Atomic # 17 Polarization: -3.64 SS G_CDS: -0.15 Total: -3.80 kcal
Total: -60.19 5.10 -55.09 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000216659613.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.423 kcal
(2) G-P(sol) polarization free energy of solvation -60.192 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.769 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.102 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.090 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.666 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds