Wall clock time and date at job start Mon Mar 30 2020 07:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38717 * 120.04601 * 359.72207 * 3 2 1 5 5 C 1.38265 * 119.95878 * 179.79531 * 4 3 2 6 6 Cl 1.73595 * 119.98015 * 180.25655 * 5 4 3 7 7 C 1.38370 * 120.04061 * 0.45613 * 5 4 3 8 8 C 1.50696 * 119.95900 * 179.76770 * 7 5 4 9 9 C 1.50695 * 109.47348 * 270.02911 * 8 7 5 10 10 H 1.08002 * 120.00241 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00201 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99649 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00418 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46953 * 59.99880 * 13 11 9 15 15 H 1.48496 * 109.47517 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46925 * 300.00616 * 13 11 9 17 17 C 1.38368 * 120.08314 * 359.79827 * 7 5 4 18 18 Cl 1.73602 * 119.97834 * 179.97438 * 17 7 5 19 19 C 1.38268 * 120.04420 * 359.97438 * 17 7 5 20 20 H 1.08998 * 109.47043 * 59.99803 * 1 2 3 21 21 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47144 * 300.00205 * 1 2 3 23 23 H 1.08004 * 120.01700 * 0.02667 * 4 3 2 24 24 H 1.09000 * 109.46878 * 30.02687 * 8 7 5 25 25 H 1.08995 * 109.47074 * 150.02711 * 8 7 5 26 26 H 0.97004 * 120.00049 * 179.97438 * 12 11 9 27 27 H 1.07998 * 120.01788 * 179.97438 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3749 -0.0058 5 6 1.9208 3.6059 -0.0015 6 17 0.9769 5.0629 -0.0021 7 6 3.3026 3.6773 -0.0010 8 6 3.9868 5.0201 -0.0016 9 6 4.2148 5.4670 -1.4225 10 1 3.8958 4.8416 -2.2432 11 6 4.8298 6.6750 -1.6750 12 7 5.2178 7.4369 -0.6757 13 14 5.1132 7.2288 -3.4364 14 1 3.8084 7.3370 -4.1372 15 1 5.7872 8.5519 -3.4370 16 1 5.9695 6.2371 -4.1353 17 6 4.0571 2.5174 -0.0005 18 17 5.7906 2.6102 -0.0005 19 6 3.4312 1.2845 0.0000 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.2127 2.3195 -0.0099 24 1 3.3587 5.7480 0.5119 25 1 4.9446 4.9400 0.5123 26 1 5.6508 8.2865 -0.8533 27 1 4.0205 0.3795 -0.0001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216659668.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:09 Heat of formation + Delta-G solvation = -35.246918 kcal Electronic energy + Delta-G solvation = -14910.896542 eV Core-core repulsion = 12106.634913 eV Total energy + Delta-G solvation = -2804.261628 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.96333 -37.70961 -36.11048 -35.39833 -33.26890 -30.99387 -30.36610 -27.80749 -26.33882 -23.23504 -22.36271 -20.66178 -18.12520 -16.43796 -16.31682 -15.70114 -15.16816 -14.76821 -14.24216 -14.03019 -13.69510 -13.33730 -12.25595 -12.17828 -11.80166 -11.71828 -11.44850 -11.39387 -10.96473 -10.77496 -10.59491 -10.44738 -10.06005 -9.97360 -9.60330 -9.36958 -8.36406 -8.32780 -7.64268 -5.98102 -4.00222 1.35146 1.67992 2.40010 2.84106 3.36063 3.39729 3.42964 3.45129 3.88354 4.49791 4.99356 5.08056 5.10977 5.32173 5.38311 5.40816 5.49170 5.59400 5.86352 6.27339 6.49715 6.55788 6.87322 7.42900 7.57102 7.68534 7.95581 8.32391 9.00943 9.61751 11.12134 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.021511 B = 0.007690 C = 0.006398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.330880 B = 3640.164304 C = 4375.052445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.118 3.882 4 C -0.198 4.198 5 C 0.007 3.993 6 Cl -0.051 7.051 7 C -0.053 4.053 8 C 0.046 3.954 9 C -0.498 4.498 10 H 0.054 0.946 11 C 0.063 3.937 12 N -0.892 5.892 13 Si 0.890 3.110 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.276 1.276 17 C 0.006 3.994 18 Cl -0.046 7.046 19 C -0.142 4.142 20 H 0.055 0.945 21 H 0.098 0.902 22 H 0.055 0.945 23 H 0.134 0.866 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.261 0.739 27 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.837 -11.837 2.485 14.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.073 3.927 4 C -0.218 4.218 5 C -0.020 4.020 6 Cl -0.022 7.022 7 C -0.054 4.054 8 C 0.009 3.991 9 C -0.537 4.537 10 H 0.072 0.928 11 C -0.138 4.138 12 N -0.531 5.531 13 Si 0.718 3.282 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.021 4.021 18 Cl -0.016 7.016 19 C -0.162 4.162 20 H 0.074 0.926 21 H 0.116 0.884 22 H 0.073 0.927 23 H 0.152 0.848 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.594 -11.708 2.526 14.182 hybrid contribution -0.067 0.610 -1.032 1.201 sum -7.661 -11.098 1.494 13.568 Atomic orbital electron populations 1.23033 0.78620 1.03623 1.01495 1.86039 1.21143 1.26358 1.89381 1.18336 0.91346 0.83724 0.99283 1.21032 1.00234 0.90745 1.09772 1.20316 0.91336 0.87212 1.03172 1.98355 1.71275 1.36009 1.96544 1.20435 0.91236 0.98421 0.95350 1.18496 0.96135 0.85708 0.98731 1.20781 1.38648 1.03576 0.90662 0.92809 1.24893 0.95582 0.96476 0.96861 1.69938 1.40564 1.12087 1.30555 0.86674 0.78459 0.77804 0.85240 1.20233 1.21316 1.20188 1.20265 0.85719 0.92807 1.03283 1.98360 1.08235 1.98516 1.96533 1.20158 0.91545 0.97274 1.07213 0.92630 0.88408 0.92678 0.84777 0.94032 0.93976 0.92889 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 15 2 O -0.32 -4.31 10.50 -19.44 -0.20 -4.51 15 3 C 0.12 1.87 6.69 -39.23 -0.26 1.61 15 4 C -0.20 -3.19 8.82 -39.39 -0.35 -3.54 15 5 C 0.01 0.13 6.31 -39.52 -0.25 -0.12 15 6 Cl -0.05 -0.97 27.29 -51.86 -1.41 -2.38 15 7 C -0.05 -1.13 5.08 -104.53 -0.53 -1.66 15 8 C 0.05 1.16 4.30 -29.04 -0.12 1.03 15 9 C -0.50 -13.63 9.09 -34.44 -0.31 -13.94 15 10 H 0.05 1.48 7.74 -52.49 -0.41 1.08 15 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 12 N -0.89 -26.08 13.29 55.43 0.74 -25.35 15 13 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 15 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 15 17 C 0.01 0.13 6.31 -39.52 -0.25 -0.12 15 18 Cl -0.05 -0.88 27.29 -51.86 -1.41 -2.29 15 19 C -0.14 -2.39 9.77 -39.39 -0.38 -2.77 15 20 H 0.06 0.49 7.65 -51.93 -0.40 0.09 15 21 H 0.10 0.66 8.14 -51.93 -0.42 0.24 15 22 H 0.05 0.47 7.67 -51.93 -0.40 0.07 15 23 H 0.13 1.77 6.30 -52.48 -0.33 1.44 15 24 H 0.04 1.10 6.90 -51.93 -0.36 0.74 15 25 H 0.04 1.12 6.90 -51.93 -0.36 0.76 15 26 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 27 H 0.14 2.01 8.06 -52.49 -0.42 1.59 15 LS Contribution 268.52 15.07 4.05 4.05 Total: -1.00 -29.44 268.52 -7.07 -36.51 By element: Atomic # 1 Polarization: -3.82 SS G_CDS: -2.23 Total: -6.05 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -1.57 Total: -16.59 kcal Atomic # 7 Polarization: -26.08 SS G_CDS: 0.74 Total: -25.35 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.20 Total: -4.51 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -2.83 Total: -4.67 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.44 -7.07 -36.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216659668.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.259 kcal (2) G-P(sol) polarization free energy of solvation -29.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds