Wall clock time and date at job start Mon Mar 30 2020 07:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38717 * 120.04601 * 359.72207 * 3 2 1 5 5 C 1.38265 * 119.95878 * 179.79531 * 4 3 2 6 6 Cl 1.73595 * 119.98015 * 180.25655 * 5 4 3 7 7 C 1.38370 * 120.04061 * 0.45613 * 5 4 3 8 8 C 1.50696 * 119.95900 * 179.76770 * 7 5 4 9 9 C 1.50695 * 109.47348 * 270.02911 * 8 7 5 10 10 H 1.08002 * 120.00241 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00201 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99649 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00418 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46953 * 59.99880 * 13 11 9 15 15 H 1.48496 * 109.47517 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46925 * 300.00616 * 13 11 9 17 17 C 1.38368 * 120.08314 * 359.79827 * 7 5 4 18 18 Cl 1.73602 * 119.97834 * 179.97438 * 17 7 5 19 19 C 1.38268 * 120.04420 * 359.97438 * 17 7 5 20 20 H 1.08998 * 109.47043 * 59.99803 * 1 2 3 21 21 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47144 * 300.00205 * 1 2 3 23 23 H 1.08004 * 120.01700 * 0.02667 * 4 3 2 24 24 H 1.09000 * 109.46878 * 30.02687 * 8 7 5 25 25 H 1.08995 * 109.47074 * 150.02711 * 8 7 5 26 26 H 0.97004 * 120.00049 * 179.97438 * 12 11 9 27 27 H 1.07998 * 120.01788 * 179.97438 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3749 -0.0058 5 6 1.9208 3.6059 -0.0015 6 17 0.9769 5.0629 -0.0021 7 6 3.3026 3.6773 -0.0010 8 6 3.9868 5.0201 -0.0016 9 6 4.2148 5.4670 -1.4225 10 1 3.8958 4.8416 -2.2432 11 6 4.8298 6.6750 -1.6750 12 7 5.2178 7.4369 -0.6757 13 14 5.1132 7.2288 -3.4364 14 1 3.8084 7.3370 -4.1372 15 1 5.7872 8.5519 -3.4370 16 1 5.9695 6.2371 -4.1353 17 6 4.0571 2.5174 -0.0005 18 17 5.7906 2.6102 -0.0005 19 6 3.4312 1.2845 0.0000 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.2127 2.3195 -0.0099 24 1 3.3587 5.7480 0.5119 25 1 4.9446 4.9400 0.5123 26 1 5.6508 8.2865 -0.8533 27 1 4.0205 0.3795 -0.0001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216659668.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:09 Heat of formation + Delta-G solvation = -51.679978 kcal Electronic energy + Delta-G solvation = -14911.609132 eV Core-core repulsion = 12106.634913 eV Total energy + Delta-G solvation = -2804.974219 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.22302 -39.01000 -37.59012 -36.84976 -35.23952 -32.69430 -31.74543 -29.08290 -27.77035 -25.04778 -23.73722 -22.19664 -19.31980 -18.43626 -17.72237 -16.81956 -16.69613 -16.27036 -15.77887 -15.42596 -14.97652 -14.87509 -14.05646 -13.49260 -13.41708 -13.20521 -13.00092 -12.62445 -12.56852 -12.54450 -12.21435 -12.05854 -11.63650 -11.58022 -11.36757 -11.19787 -10.48011 -9.74719 -9.10002 -8.10172 -6.19192 -0.03384 0.25494 0.95937 1.39179 1.42280 1.43790 1.51067 2.37286 2.40024 2.54022 3.22200 3.84150 3.99888 4.04910 4.12707 4.38938 4.44226 4.50683 4.79121 4.96046 5.00546 5.14334 5.32075 5.49211 5.74147 5.82419 6.23656 6.30185 6.88649 7.46062 8.99078 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.021511 B = 0.007690 C = 0.006398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.330880 B = 3640.164304 C = 4375.052445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.318 6.318 3 C 0.136 3.864 4 C -0.188 4.188 5 C -0.002 4.002 6 Cl -0.057 7.057 7 C -0.090 4.090 8 C 0.059 3.941 9 C -0.501 4.501 10 H 0.047 0.953 11 C 0.013 3.987 12 N -0.927 5.927 13 Si 0.949 3.051 14 H -0.270 1.270 15 H -0.284 1.284 16 H -0.271 1.271 17 C -0.002 4.002 18 Cl -0.054 7.054 19 C -0.140 4.140 20 H 0.064 0.936 21 H 0.128 0.872 22 H 0.066 0.934 23 H 0.167 0.833 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.262 0.738 27 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.317 -13.774 1.719 16.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.231 6.231 3 C 0.090 3.910 4 C -0.207 4.207 5 C -0.029 4.029 6 Cl -0.028 7.028 7 C -0.091 4.091 8 C 0.022 3.978 9 C -0.539 4.539 10 H 0.066 0.934 11 C -0.185 4.185 12 N -0.567 5.567 13 Si 0.774 3.226 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.196 1.196 17 C -0.029 4.029 18 Cl -0.025 7.025 19 C -0.159 4.159 20 H 0.082 0.918 21 H 0.146 0.854 22 H 0.085 0.915 23 H 0.184 0.816 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.071 0.929 27 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -9.091 -13.667 1.757 16.508 hybrid contribution 0.273 1.051 -0.750 1.320 sum -8.818 -12.616 1.007 15.425 Atomic orbital electron populations 1.23458 0.76002 1.06121 1.02481 1.86070 1.23725 1.24749 1.88604 1.18382 0.91119 0.84560 0.96941 1.21281 1.01861 0.89395 1.08171 1.20430 0.90630 0.88187 1.03669 1.98347 1.71102 1.36720 1.96627 1.20152 0.92437 0.97188 0.99347 1.18138 0.94933 0.87646 0.97119 1.21017 1.37872 1.03394 0.91665 0.93432 1.25663 0.95552 0.96726 1.00567 1.70055 1.41637 1.12505 1.32521 0.85747 0.78582 0.77475 0.80793 1.19524 1.20914 1.19580 1.20333 0.85370 0.93284 1.03909 1.98349 1.08902 1.98571 1.96634 1.20354 0.92446 0.96886 1.06247 0.91754 0.85375 0.91489 0.81587 0.96267 0.96284 0.92904 0.82241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 15 2 O -0.32 -7.39 10.50 -92.48 -0.97 -8.36 15 3 C 0.14 3.89 6.69 22.50 0.15 4.04 15 4 C -0.19 -5.54 8.82 22.39 0.20 -5.34 15 5 C 0.00 -0.08 6.31 22.31 0.14 0.07 15 6 Cl -0.06 -2.15 27.29 -2.72 -0.07 -2.22 15 7 C -0.09 -3.87 5.08 -19.80 -0.10 -3.97 15 8 C 0.06 3.04 4.30 29.10 0.13 3.17 15 9 C -0.50 -27.88 9.09 25.60 0.23 -27.65 15 10 H 0.05 2.64 7.74 -2.91 -0.02 2.62 15 11 C 0.01 0.74 5.46 84.65 0.46 1.20 15 12 N -0.93 -55.38 13.29 21.45 0.28 -55.09 15 13 Si 0.95 44.57 29.54 68.60 2.03 46.60 15 14 H -0.27 -12.31 7.11 99.48 0.71 -11.60 15 15 H -0.28 -13.05 7.11 99.48 0.71 -12.35 15 16 H -0.27 -12.38 7.11 99.48 0.71 -11.67 15 17 C 0.00 -0.07 6.31 22.31 0.14 0.07 15 18 Cl -0.05 -2.07 27.29 -2.72 -0.07 -2.15 15 19 C -0.14 -4.40 9.77 22.39 0.22 -4.18 15 20 H 0.06 0.84 7.65 -2.39 -0.02 0.83 15 21 H 0.13 1.09 8.14 -2.39 -0.02 1.07 15 22 H 0.07 0.84 7.67 -2.39 -0.02 0.82 15 23 H 0.17 3.74 6.30 -2.91 -0.02 3.73 15 24 H 0.02 1.06 6.90 -2.39 -0.02 1.04 15 25 H 0.02 1.05 6.90 -2.39 -0.02 1.04 15 26 H 0.26 14.88 8.31 -92.71 -0.77 14.11 15 27 H 0.16 4.23 8.06 -2.91 -0.02 4.21 15 Total: -1.00 -63.75 268.52 5.07 -58.68 By element: Atomic # 1 Polarization: -7.35 SS G_CDS: 1.20 Total: -6.15 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: 2.68 Total: -31.30 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.28 Total: -55.09 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.97 Total: -8.36 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 17 Polarization: -4.22 SS G_CDS: -0.15 Total: -4.37 kcal Total: -63.75 5.07 -58.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216659668.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.004 kcal (2) G-P(sol) polarization free energy of solvation -63.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds