Wall clock time and date at job start Mon Mar 30 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.28360 * 2 1 4 4 C 1.54377 * 110.32392 * 122.12531 * 2 1 3 5 5 N 1.48556 * 104.59430 * 142.85360 * 4 2 1 6 6 C 1.46898 * 111.00163 * 200.95877 * 5 4 2 7 7 H 1.09004 * 109.47106 * 60.00459 * 6 5 4 8 8 C 1.50698 * 109.47286 * 300.00246 * 6 5 4 9 9 H 1.07995 * 120.00177 * 125.31249 * 8 6 5 10 10 C 1.37876 * 119.99735 * 305.31100 * 8 6 5 11 11 N 1.31516 * 120.00258 * 9.56744 * 10 8 6 12 12 Si 1.86808 * 119.99842 * 189.56413 * 10 8 6 13 13 H 1.48500 * 109.47269 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47080 * 120.00071 * 12 10 8 15 15 H 1.48503 * 109.47135 * 240.00120 * 12 10 8 16 16 C 1.50698 * 109.47471 * 180.02562 * 6 5 4 17 17 C 1.38231 * 119.99871 * 32.69674 * 16 6 5 18 18 C 1.38239 * 120.00380 * 179.74422 * 17 16 6 19 19 C 1.38236 * 119.99430 * 0.55390 * 18 17 16 20 20 C 1.38240 * 120.00052 * 359.70634 * 19 18 17 21 21 C 1.38231 * 120.00075 * 0.02562 * 20 19 18 22 22 C 1.48559 * 104.22102 * 320.51751 * 5 4 2 23 23 C 1.54253 * 110.32521 * 237.87537 * 2 1 3 24 24 H 1.08994 * 110.32653 * 122.10418 * 23 2 1 25 25 C 1.53002 * 110.32560 * 359.89413 * 23 2 1 26 26 H 1.08995 * 109.47735 * 300.69794 * 1 2 3 27 27 H 1.08997 * 109.47310 * 60.70116 * 1 2 3 28 28 H 1.09006 * 109.46630 * 180.70074 * 1 2 3 29 29 H 1.08998 * 110.41481 * 261.63275 * 4 2 1 30 30 H 1.09004 * 110.41216 * 23.95868 * 4 2 1 31 31 H 0.97003 * 119.99937 * 180.02562 * 11 10 8 32 32 H 1.08008 * 120.00313 * 0.02562 * 17 16 6 33 33 H 1.07997 * 120.00310 * 180.28054 * 18 17 16 34 34 H 1.08004 * 119.99792 * 179.72039 * 19 18 17 35 35 H 1.08002 * 119.99828 * 179.97438 * 20 19 18 36 36 H 1.08003 * 119.99981 * 179.97438 * 21 20 19 37 37 H 1.09000 * 110.41116 * 158.26073 * 22 5 4 38 38 H 1.09003 * 110.41016 * 280.58039 * 22 5 4 39 39 H 1.08996 * 109.46771 * 60.00190 * 25 23 2 40 40 H 1.08995 * 109.47066 * 180.02562 * 25 23 2 41 41 H 1.08999 * 109.47182 * 299.99908 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0662 -0.7698 1.2260 5 7 3.2708 -1.4800 0.7246 6 6 3.6092 -2.6181 1.5896 7 1 2.7744 -3.3186 1.6115 8 6 3.8863 -2.1230 2.9857 9 1 3.3450 -2.5377 3.8231 10 6 4.8311 -1.1406 3.1938 11 7 5.3540 -0.5034 2.1690 12 14 5.3683 -0.7145 4.9315 13 1 4.6358 -1.5696 5.8998 14 1 6.8280 -0.9494 5.0700 15 1 5.0685 0.7138 5.2061 16 6 4.8337 -3.3119 1.0509 17 6 5.8145 -2.5817 0.4063 18 6 6.9403 -3.2173 -0.0832 19 6 7.0798 -4.5849 0.0619 20 6 6.0964 -5.3160 0.7017 21 6 4.9733 -4.6796 1.1961 22 6 2.8840 -1.9404 -0.6339 23 6 2.0658 -0.7692 -1.2250 24 1 2.7067 -0.1244 -1.8263 25 6 0.9050 -1.3015 -2.0677 26 1 -0.3634 0.5246 0.8836 27 1 -0.3634 0.5029 -0.8962 28 1 -0.3633 -1.0277 0.0126 29 1 2.3377 -0.0761 2.0217 30 1 1.3228 -1.4832 1.5819 31 1 6.0189 0.1875 2.3155 32 1 5.7035 -1.5137 0.2891 33 1 7.7087 -2.6461 -0.5828 34 1 7.9572 -5.0822 -0.3246 35 1 6.2052 -6.3846 0.8146 36 1 4.2048 -5.2508 1.6956 37 1 3.7712 -2.1279 -1.2387 38 1 2.2712 -2.8396 -0.5704 39 1 0.2931 -0.4674 -2.4113 40 1 1.2988 -1.8423 -2.9282 41 1 0.2962 -1.9743 -1.4638 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219677114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:45 Heat of formation + Delta-G solvation = 33.104975 kcal Electronic energy + Delta-G solvation = -20334.451499 eV Core-core repulsion = 17600.095462 eV Total energy + Delta-G solvation = -2734.356037 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.94545 -37.71558 -34.35122 -31.82359 -30.26064 -30.06659 -29.58085 -27.03957 -25.05488 -24.54494 -22.52955 -21.41290 -20.59096 -19.51828 -18.21464 -16.27313 -15.78224 -15.60608 -14.75722 -14.32636 -13.94385 -13.61048 -13.39393 -13.29400 -12.85204 -12.41971 -12.19043 -12.11545 -11.60173 -11.55288 -11.42518 -11.41799 -11.00629 -10.95350 -10.75535 -10.59739 -10.18212 -10.01009 -9.93122 -9.81800 -9.70052 -9.58441 -9.11140 -8.44430 -7.81058 -7.40826 -6.91329 -5.89632 -4.07547 2.47977 2.58734 3.29382 3.38575 3.41780 4.42821 4.94078 5.11944 5.24622 5.28477 5.36424 5.59654 5.76566 5.80033 5.83075 5.95203 5.96536 6.01074 6.08872 6.12885 6.28178 6.29336 6.35320 6.41550 6.45298 6.61172 6.67878 6.70158 6.74883 6.87590 6.97353 7.03294 7.09505 7.22634 7.28353 7.49281 7.67597 7.78802 7.96982 8.10634 8.28751 8.48383 8.52905 9.02162 9.58715 11.04417 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014900 B = 0.009780 C = 0.006716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.782887 B = 2862.307653 C = 4167.933028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 H 0.069 0.931 4 C 0.069 3.931 5 N -0.454 5.454 6 C 0.237 3.763 7 H -0.002 1.002 8 C -0.530 4.530 9 H 0.057 0.943 10 C 0.088 3.912 11 N -0.824 5.824 12 Si 0.877 3.123 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.285 1.285 16 C -0.028 4.028 17 C -0.069 4.069 18 C -0.148 4.148 19 C -0.153 4.153 20 C -0.142 4.142 21 C -0.137 4.137 22 C 0.029 3.971 23 C -0.090 4.090 24 H 0.069 0.931 25 C -0.142 4.142 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.021 0.979 31 H 0.255 0.745 32 H 0.161 0.839 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.021 0.979 39 H 0.051 0.949 40 H 0.046 0.954 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.424 -1.227 -6.256 7.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 H 0.088 0.912 4 C -0.059 4.059 5 N -0.178 5.178 6 C 0.131 3.869 7 H 0.016 0.984 8 C -0.568 4.568 9 H 0.075 0.925 10 C -0.120 4.120 11 N -0.457 5.457 12 Si 0.705 3.295 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.029 4.029 17 C -0.088 4.088 18 C -0.166 4.166 19 C -0.171 4.171 20 C -0.160 4.160 21 C -0.155 4.155 22 C -0.099 4.099 23 C -0.109 4.109 24 H 0.087 0.913 25 C -0.199 4.199 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.179 0.821 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.811 -0.733 -6.307 7.405 hybrid contribution -0.084 -0.447 1.165 1.250 sum -3.895 -1.181 -5.142 6.558 Atomic orbital electron populations 1.21922 0.96131 1.01206 1.00589 1.21950 0.94112 0.99706 0.95762 0.91229 1.22691 0.90914 0.96707 0.95587 1.65650 1.29612 1.23515 0.98981 1.18404 0.89177 0.87169 0.92160 0.98440 1.20819 1.23170 1.22072 0.90726 0.92483 1.24875 0.95769 0.95349 0.95981 1.70070 1.25962 1.21001 1.28632 0.86792 0.78722 0.78061 0.85960 1.19921 1.20991 1.21079 1.20289 0.98431 0.91669 0.92536 1.21780 0.91174 1.02342 0.93466 1.21181 0.98873 0.94238 1.02297 1.20797 0.98807 0.94717 1.02783 1.20758 0.95377 0.98363 1.01534 1.20896 0.97977 0.95047 1.01624 1.23249 0.97242 0.94628 0.94827 1.21895 0.95944 0.97215 0.95893 0.91269 1.21927 0.98299 1.00406 0.99266 0.93359 0.93175 0.92859 0.90512 0.96073 0.93469 0.82148 0.88041 0.88290 0.88093 0.87919 0.91630 0.96075 0.92962 0.93521 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 7.93 37.16 0.29 -1.68 16 2 C -0.10 -1.63 3.65 -89.24 -0.33 -1.96 16 3 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 4 C 0.07 1.44 5.26 -2.19 -0.01 1.42 16 5 N -0.45 -10.13 3.04 -224.65 -0.68 -10.81 16 6 C 0.24 5.73 1.72 -70.02 -0.12 5.61 16 7 H 0.00 -0.05 7.90 -51.93 -0.41 -0.46 16 8 C -0.53 -13.91 7.81 -34.44 -0.27 -14.18 16 9 H 0.06 1.53 7.83 -52.49 -0.41 1.11 16 10 C 0.09 2.30 5.19 -17.82 -0.09 2.21 16 11 N -0.82 -21.55 9.21 55.43 0.51 -21.04 16 12 Si 0.88 20.66 29.55 -169.99 -5.02 15.64 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 C -0.03 -0.66 4.18 -104.63 -0.44 -1.10 16 17 C -0.07 -1.60 7.13 -39.58 -0.28 -1.88 16 18 C -0.15 -3.05 10.05 -39.58 -0.40 -3.45 16 19 C -0.15 -2.93 10.05 -39.58 -0.40 -3.33 16 20 C -0.14 -2.76 10.05 -39.58 -0.40 -3.16 16 21 C -0.14 -2.94 9.69 -39.58 -0.38 -3.33 16 22 C 0.03 0.57 5.26 -2.06 -0.01 0.56 16 23 C -0.09 -1.49 3.66 -89.12 -0.33 -1.82 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 25 C -0.14 -1.92 7.95 37.16 0.30 -1.63 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.62 6.88 -51.93 -0.36 0.26 16 28 H 0.05 0.74 6.69 -51.93 -0.35 0.40 16 29 H 0.08 1.76 7.98 -51.93 -0.41 1.35 16 30 H 0.02 0.44 7.68 -51.93 -0.40 0.04 16 31 H 0.26 6.50 8.31 -40.82 -0.34 6.17 16 32 H 0.16 4.01 5.67 -52.48 -0.30 3.71 16 33 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 34 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 35 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 36 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 37 H 0.07 1.32 7.31 -51.93 -0.38 0.94 16 38 H 0.02 0.41 7.60 -51.93 -0.39 0.02 16 39 H 0.05 0.63 6.83 -51.93 -0.35 0.27 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.74 6.72 -51.93 -0.35 0.39 16 LS Contribution 314.91 15.07 4.75 4.75 Total: -1.00 -26.36 314.91 -9.94 -36.30 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.63 Total: 2.87 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: -2.86 Total: -27.70 kcal Atomic # 7 Polarization: -31.68 SS G_CDS: -0.17 Total: -31.85 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.36 -9.94 -36.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219677114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.409 kcal (2) G-P(sol) polarization free energy of solvation -26.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds