Wall clock time and date at job start Mon Mar 30 2020 06:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.28360 * 2 1 4 4 C 1.54377 * 110.32392 * 122.12531 * 2 1 3 5 5 N 1.48556 * 104.59430 * 142.85360 * 4 2 1 6 6 C 1.46898 * 111.00163 * 200.95877 * 5 4 2 7 7 H 1.09004 * 109.47106 * 60.00459 * 6 5 4 8 8 C 1.50698 * 109.47286 * 300.00246 * 6 5 4 9 9 H 1.07995 * 120.00177 * 125.31249 * 8 6 5 10 10 C 1.37876 * 119.99735 * 305.31100 * 8 6 5 11 11 N 1.31516 * 120.00258 * 9.56744 * 10 8 6 12 12 Si 1.86808 * 119.99842 * 189.56413 * 10 8 6 13 13 H 1.48500 * 109.47269 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47080 * 120.00071 * 12 10 8 15 15 H 1.48503 * 109.47135 * 240.00120 * 12 10 8 16 16 C 1.50698 * 109.47471 * 180.02562 * 6 5 4 17 17 C 1.38231 * 119.99871 * 32.69674 * 16 6 5 18 18 C 1.38239 * 120.00380 * 179.74422 * 17 16 6 19 19 C 1.38236 * 119.99430 * 0.55390 * 18 17 16 20 20 C 1.38240 * 120.00052 * 359.70634 * 19 18 17 21 21 C 1.38231 * 120.00075 * 0.02562 * 20 19 18 22 22 C 1.48559 * 104.22102 * 320.51751 * 5 4 2 23 23 C 1.54253 * 110.32521 * 237.87537 * 2 1 3 24 24 H 1.08994 * 110.32653 * 122.10418 * 23 2 1 25 25 C 1.53002 * 110.32560 * 359.89413 * 23 2 1 26 26 H 1.08995 * 109.47735 * 300.69794 * 1 2 3 27 27 H 1.08997 * 109.47310 * 60.70116 * 1 2 3 28 28 H 1.09006 * 109.46630 * 180.70074 * 1 2 3 29 29 H 1.08998 * 110.41481 * 261.63275 * 4 2 1 30 30 H 1.09004 * 110.41216 * 23.95868 * 4 2 1 31 31 H 0.97003 * 119.99937 * 180.02562 * 11 10 8 32 32 H 1.08008 * 120.00313 * 0.02562 * 17 16 6 33 33 H 1.07997 * 120.00310 * 180.28054 * 18 17 16 34 34 H 1.08004 * 119.99792 * 179.72039 * 19 18 17 35 35 H 1.08002 * 119.99828 * 179.97438 * 20 19 18 36 36 H 1.08003 * 119.99981 * 179.97438 * 21 20 19 37 37 H 1.09000 * 110.41116 * 158.26073 * 22 5 4 38 38 H 1.09003 * 110.41016 * 280.58039 * 22 5 4 39 39 H 1.08996 * 109.46771 * 60.00190 * 25 23 2 40 40 H 1.08995 * 109.47066 * 180.02562 * 25 23 2 41 41 H 1.08999 * 109.47182 * 299.99908 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0662 -0.7698 1.2260 5 7 3.2708 -1.4800 0.7246 6 6 3.6092 -2.6181 1.5896 7 1 2.7744 -3.3186 1.6115 8 6 3.8863 -2.1230 2.9857 9 1 3.3450 -2.5377 3.8231 10 6 4.8311 -1.1406 3.1938 11 7 5.3540 -0.5034 2.1690 12 14 5.3683 -0.7145 4.9315 13 1 4.6358 -1.5696 5.8998 14 1 6.8280 -0.9494 5.0700 15 1 5.0685 0.7138 5.2061 16 6 4.8337 -3.3119 1.0509 17 6 5.8145 -2.5817 0.4063 18 6 6.9403 -3.2173 -0.0832 19 6 7.0798 -4.5849 0.0619 20 6 6.0964 -5.3160 0.7017 21 6 4.9733 -4.6796 1.1961 22 6 2.8840 -1.9404 -0.6339 23 6 2.0658 -0.7692 -1.2250 24 1 2.7067 -0.1244 -1.8263 25 6 0.9050 -1.3015 -2.0677 26 1 -0.3634 0.5246 0.8836 27 1 -0.3634 0.5029 -0.8962 28 1 -0.3633 -1.0277 0.0126 29 1 2.3377 -0.0761 2.0217 30 1 1.3228 -1.4832 1.5819 31 1 6.0189 0.1875 2.3155 32 1 5.7035 -1.5137 0.2891 33 1 7.7087 -2.6461 -0.5828 34 1 7.9572 -5.0822 -0.3246 35 1 6.2052 -6.3846 0.8146 36 1 4.2048 -5.2508 1.6956 37 1 3.7712 -2.1279 -1.2387 38 1 2.2712 -2.8396 -0.5704 39 1 0.2931 -0.4674 -2.4113 40 1 1.2988 -1.8423 -2.9282 41 1 0.2962 -1.9743 -1.4638 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219677114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:44 Heat of formation + Delta-G solvation = 21.497064 kcal Electronic energy + Delta-G solvation = -20334.954856 eV Core-core repulsion = 17600.095462 eV Total energy + Delta-G solvation = -2734.859394 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.55659 -39.27397 -36.03030 -33.66362 -31.82070 -31.53861 -31.16428 -28.78170 -26.54790 -26.06767 -24.21927 -23.04452 -22.19451 -21.27363 -19.60728 -18.17906 -17.38897 -17.13113 -16.61286 -15.92735 -15.64574 -15.14241 -14.91635 -14.67418 -14.44467 -14.05670 -13.77733 -13.67178 -13.24461 -13.05844 -12.91615 -12.81752 -12.78950 -12.51637 -12.38420 -12.25108 -11.90289 -11.64316 -11.42477 -11.38376 -11.21305 -11.12269 -10.87041 -10.43759 -9.45929 -9.11496 -8.66858 -7.87849 -6.12109 0.82151 0.95663 1.38172 1.43074 1.50180 2.45851 3.19175 3.34954 3.65948 3.88156 3.91891 4.17519 4.34772 4.36573 4.45361 4.51847 4.63769 4.64865 4.69269 4.74067 4.82157 4.92158 4.95318 4.96094 5.05201 5.10866 5.19484 5.21051 5.23064 5.38988 5.44795 5.48124 5.57096 5.61848 5.67733 5.75027 5.86252 5.98645 6.17890 6.34711 6.54347 6.61005 6.74698 7.11343 7.55242 9.02918 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014900 B = 0.009780 C = 0.006716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.782887 B = 2862.307653 C = 4167.933028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 H 0.065 0.935 4 C 0.070 3.930 5 N -0.469 5.469 6 C 0.240 3.760 7 H -0.021 1.021 8 C -0.550 4.550 9 H 0.039 0.961 10 C 0.057 3.943 11 N -0.833 5.833 12 Si 0.926 3.074 13 H -0.278 1.278 14 H -0.285 1.285 15 H -0.280 1.280 16 C -0.050 4.050 17 C -0.087 4.087 18 C -0.153 4.153 19 C -0.146 4.146 20 C -0.136 4.136 21 C -0.154 4.154 22 C 0.033 3.967 23 C -0.085 4.085 24 H 0.070 0.930 25 C -0.134 4.134 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.013 0.987 31 H 0.253 0.747 32 H 0.136 0.864 33 H 0.121 0.879 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.107 0.893 37 H 0.055 0.945 38 H 0.017 0.983 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.192 -1.801 -7.597 8.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.109 4.109 3 H 0.083 0.917 4 C -0.058 4.058 5 N -0.192 5.192 6 C 0.133 3.867 7 H -0.003 1.003 8 C -0.588 4.588 9 H 0.058 0.942 10 C -0.149 4.149 11 N -0.466 5.466 12 Si 0.753 3.247 13 H -0.203 1.203 14 H -0.211 1.211 15 H -0.206 1.206 16 C -0.052 4.052 17 C -0.105 4.105 18 C -0.172 4.172 19 C -0.164 4.164 20 C -0.154 4.154 21 C -0.172 4.172 22 C -0.095 4.095 23 C -0.104 4.104 24 H 0.089 0.911 25 C -0.191 4.191 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.031 0.969 31 H 0.063 0.937 32 H 0.154 0.846 33 H 0.139 0.861 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.125 0.875 37 H 0.073 0.927 38 H 0.035 0.965 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.585 -1.305 -7.654 8.552 hybrid contribution -0.114 -0.328 1.566 1.604 sum -3.699 -1.633 -6.088 7.309 Atomic orbital electron populations 1.21862 0.93358 1.01743 1.02092 1.21902 0.96373 0.98701 0.93949 0.91688 1.22628 0.90428 0.96168 0.96591 1.65491 1.30582 1.23079 1.00010 1.18293 0.89252 0.87319 0.91880 1.00307 1.20921 1.23686 1.22712 0.91481 0.94243 1.25310 0.95828 0.95309 0.98496 1.70193 1.25927 1.20980 1.29489 0.86028 0.77944 0.77811 0.82891 1.20251 1.21108 1.20610 1.20281 0.98252 0.92714 0.93904 1.21573 0.92550 1.01350 0.95030 1.21440 0.98359 0.95437 1.01923 1.21216 0.99724 0.94025 1.01410 1.21155 0.94148 1.00185 0.99951 1.21110 0.99329 0.94533 1.02273 1.23210 0.97217 0.95786 0.93323 1.21880 0.96746 0.95826 0.95915 0.91132 1.21866 0.97129 1.01234 0.98877 0.93061 0.90514 0.92748 0.93706 0.96882 0.93690 0.84594 0.86051 0.84444 0.84556 0.87514 0.92696 0.96495 0.90617 0.92564 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 7.93 71.98 0.57 -2.91 16 2 C -0.09 -3.03 3.65 -9.90 -0.04 -3.06 16 3 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 4 C 0.07 3.03 5.26 86.45 0.45 3.49 16 5 N -0.47 -21.74 3.04 -864.67 -2.63 -24.37 16 6 C 0.24 12.10 1.72 43.42 0.07 12.18 16 7 H -0.02 -1.07 7.90 -2.38 -0.02 -1.09 16 8 C -0.55 -30.16 7.81 25.60 0.20 -29.96 16 9 H 0.04 2.22 7.83 -2.91 -0.02 2.20 16 10 C 0.06 3.08 5.19 84.65 0.44 3.52 16 11 N -0.83 -44.85 9.21 21.45 0.20 -44.65 16 12 Si 0.93 43.37 29.55 68.60 2.03 45.40 16 13 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 14 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 16 C -0.05 -2.41 4.18 -19.87 -0.08 -2.50 16 17 C -0.09 -4.05 7.13 22.27 0.16 -3.89 16 18 C -0.15 -6.13 10.05 22.27 0.22 -5.90 16 19 C -0.15 -5.14 10.05 22.27 0.22 -4.92 16 20 C -0.14 -4.95 10.05 22.27 0.22 -4.73 16 21 C -0.15 -6.58 9.69 22.27 0.22 -6.37 16 22 C 0.03 1.31 5.26 86.53 0.46 1.77 16 23 C -0.08 -2.72 3.66 -9.82 -0.04 -2.75 16 24 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 25 C -0.13 -3.29 7.95 71.98 0.57 -2.72 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 27 H 0.08 1.62 6.88 -2.39 -0.02 1.60 16 28 H 0.05 1.42 6.69 -2.38 -0.02 1.40 16 29 H 0.04 2.17 7.98 -2.39 -0.02 2.16 16 30 H 0.01 0.57 7.68 -2.38 -0.02 0.55 16 31 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 32 H 0.14 7.02 5.67 -2.91 -0.02 7.00 16 33 H 0.12 4.26 8.06 -2.91 -0.02 4.23 16 34 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16 35 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 36 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 37 H 0.05 2.26 7.31 -2.39 -0.02 2.25 16 38 H 0.02 0.68 7.60 -2.39 -0.02 0.66 16 39 H 0.07 1.54 6.83 -2.39 -0.02 1.52 16 40 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.05 1.32 6.72 -2.39 -0.02 1.30 16 Total: -1.00 -58.41 314.91 4.24 -54.17 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.98 Total: 18.20 kcal Atomic # 6 Polarization: -52.41 SS G_CDS: 3.66 Total: -48.75 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: -2.43 Total: -69.02 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -58.41 4.24 -54.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219677114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.670 kcal (2) G-P(sol) polarization free energy of solvation -58.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds