Wall clock time and date at job start Mon Mar 30 2020 07:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81408 * 109.46929 * 2 1 4 4 C 1.81398 * 102.99823 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47137 * 179.97438 * 4 3 2 6 6 N 1.29946 * 126.28406 * 89.97530 * 5 4 3 7 7 O 1.21301 * 110.24604 * 179.97438 * 6 5 4 8 8 C 1.33636 * 109.81535 * 0.02562 * 7 6 5 9 9 C 1.50698 * 126.55292 * 179.97438 * 8 7 6 10 10 S 1.80998 * 109.47116 * 270.02365 * 9 8 7 11 11 C 1.76199 * 100.00013 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00250 * 0.02562 * 11 10 9 13 13 C 1.38798 * 120.00102 * 179.72368 * 11 10 9 14 14 N 1.31634 * 120.00298 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99861 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47644 * 89.99884 * 15 13 11 17 17 H 1.48506 * 109.47143 * 209.99830 * 15 13 11 18 18 H 1.48501 * 109.47120 * 329.99545 * 15 13 11 19 19 N 1.31133 * 106.89915 * 0.22073 * 8 7 6 20 20 H 1.09004 * 109.46900 * 59.99885 * 1 2 3 21 21 H 1.08999 * 109.47330 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47121 * 300.00199 * 1 2 3 23 23 H 1.09003 * 109.47071 * 240.00265 * 2 1 3 24 24 H 1.08998 * 109.47298 * 119.99945 * 2 1 3 25 25 H 1.09004 * 109.47422 * 59.99772 * 4 3 2 26 26 H 1.08997 * 109.47123 * 300.00408 * 4 3 2 27 27 H 1.09001 * 109.47434 * 150.02127 * 9 8 7 28 28 H 1.08999 * 109.47072 * 30.02606 * 9 8 7 29 29 H 0.96995 * 120.00138 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7104 0.0000 4 6 3.9370 1.5059 0.0008 5 6 4.5963 2.8611 0.0002 6 7 4.9319 3.5534 1.0474 7 8 5.4427 4.6013 0.7119 8 6 5.4820 4.6795 -0.6216 9 6 6.0369 5.8182 -1.4379 10 16 4.7247 7.0211 -1.7656 11 6 5.6255 8.2079 -2.7062 12 1 6.6743 8.0514 -2.9109 13 6 4.9857 9.3409 -3.1894 14 7 5.6587 10.2278 -3.8917 15 14 3.1698 9.6078 -2.8419 16 1 3.0144 10.3642 -1.5735 17 1 2.5608 10.3786 -3.9556 18 1 2.4905 8.2929 -2.7205 19 7 4.9407 3.5783 -1.0842 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 4.2406 0.9542 -0.8890 26 1 4.2398 0.9545 0.8909 27 1 6.4221 5.4343 -2.3825 28 1 6.8433 6.3015 -0.8863 29 1 5.2117 11.0197 -4.2290 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230998555.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:01 Heat of formation + Delta-G solvation = 57.307373 kcal Electronic energy + Delta-G solvation = -14270.867338 eV Core-core repulsion = 11642.832423 eV Total energy + Delta-G solvation = -2628.034915 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.039 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.45002 -36.00048 -33.68713 -33.09663 -32.56188 -29.81112 -28.51916 -25.76188 -24.07705 -23.35864 -21.50652 -18.15049 -17.98190 -17.15877 -16.41539 -15.30313 -15.14470 -14.97033 -14.79114 -14.44167 -14.39074 -13.49106 -13.20678 -12.92090 -12.64960 -12.28861 -12.08691 -11.73405 -11.62620 -11.27885 -11.10570 -10.96152 -10.84819 -10.24313 -10.02324 -9.59325 -9.12303 -8.77813 -7.90356 -7.14668 -6.39683 -4.16541 0.87987 1.35571 2.17035 2.48461 2.87101 3.01980 3.24638 3.39666 3.43618 3.54023 3.98239 4.21414 4.56375 4.58131 4.63019 4.81247 4.91795 4.99569 5.05309 5.28200 5.36467 5.46657 5.54247 5.73026 5.76908 5.99232 6.09046 7.83031 8.26327 8.31942 9.04282 10.68994 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.027592 B = 0.004541 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.528418 B = 6164.151171 C = 6893.566302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 S -0.222 6.222 4 C 0.004 3.996 5 C 0.175 3.825 6 N -0.375 5.375 7 O 0.086 5.914 8 C 0.224 3.776 9 C -0.013 4.013 10 S -0.162 6.162 11 C -0.513 4.513 12 H 0.096 0.904 13 C 0.098 3.902 14 N -0.873 5.873 15 Si 0.855 3.145 16 H -0.266 1.266 17 H -0.271 1.271 18 H -0.237 1.237 19 N -0.467 5.467 20 H 0.067 0.933 21 H 0.072 0.928 22 H 0.065 0.935 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.113 0.887 26 H 0.107 0.893 27 H 0.119 0.881 28 H 0.111 0.889 29 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.992 -18.605 7.500 20.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.243 4.243 3 S 0.002 5.998 4 C -0.145 4.145 5 C -0.098 4.098 6 N -0.083 5.083 7 O 0.025 5.975 8 C 0.004 3.996 9 C -0.162 4.162 10 S 0.064 5.936 11 C -0.660 4.660 12 H 0.114 0.886 13 C -0.111 4.111 14 N -0.509 5.509 15 Si 0.680 3.320 16 H -0.191 1.191 17 H -0.196 1.196 18 H -0.161 1.161 19 N -0.202 5.202 20 H 0.086 0.914 21 H 0.091 0.909 22 H 0.084 0.916 23 H 0.102 0.898 24 H 0.100 0.900 25 H 0.131 0.869 26 H 0.125 0.875 27 H 0.137 0.863 28 H 0.129 0.871 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.920 -18.095 8.203 21.038 hybrid contribution 1.342 -0.559 -0.428 1.516 sum -5.577 -18.654 7.775 20.965 Atomic orbital electron populations 1.21500 0.91927 1.02598 1.03511 1.23376 1.00515 0.95377 1.05055 1.87520 1.02083 1.12172 1.98069 1.21335 0.94528 0.91458 1.07196 1.24627 1.01663 0.98966 0.84564 1.74600 1.14749 0.95335 1.23610 1.85313 1.57038 1.30122 1.24999 1.28238 0.94366 0.95503 0.81531 1.21729 1.02102 0.92352 0.99983 1.84727 1.15115 1.22086 1.71717 1.22079 0.99182 1.06357 1.38398 0.88607 1.24693 0.98681 0.94436 0.93312 1.69916 1.36839 1.10459 1.33644 0.86769 0.84977 0.81147 0.79140 1.19059 1.19640 1.16074 1.71928 1.16094 1.03804 1.28374 0.91420 0.90926 0.91594 0.89770 0.89963 0.86903 0.87511 0.86285 0.87089 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.92 37.16 0.37 -0.61 15 2 C -0.09 -0.76 6.66 37.16 0.25 -0.51 15 3 S -0.22 -2.81 21.72 -107.50 -2.33 -5.15 15 4 C 0.00 0.05 6.57 36.01 0.24 0.28 15 5 C 0.17 2.81 7.48 -156.37 -1.17 1.64 15 6 N -0.37 -6.40 12.16 30.90 0.38 -6.02 15 7 O 0.09 1.51 11.31 18.12 0.20 1.71 15 8 C 0.22 4.00 7.77 -13.06 -0.10 3.90 15 9 C -0.01 -0.24 6.30 36.00 0.23 -0.01 15 10 S -0.16 -3.79 19.39 -107.50 -2.08 -5.88 15 11 C -0.51 -13.94 10.04 30.94 0.31 -13.63 15 12 H 0.10 2.71 8.03 -52.49 -0.42 2.29 15 13 C 0.10 2.75 5.50 -17.43 -0.10 2.66 15 14 N -0.87 -25.32 13.97 55.49 0.78 -24.55 15 15 Si 0.86 20.78 27.74 -169.99 -4.72 16.07 15 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 18 H -0.24 -5.72 6.74 56.52 0.38 -5.34 15 19 N -0.47 -8.38 11.55 -9.87 -0.11 -8.49 15 20 H 0.07 0.53 8.14 -51.93 -0.42 0.11 15 21 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 15 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 15 23 H 0.08 0.58 8.14 -51.92 -0.42 0.16 15 24 H 0.08 0.55 8.14 -51.93 -0.42 0.12 15 25 H 0.11 1.15 8.14 -51.92 -0.42 0.73 15 26 H 0.11 1.03 8.14 -51.93 -0.42 0.61 15 27 H 0.12 2.08 8.14 -51.92 -0.42 1.66 15 28 H 0.11 1.82 8.14 -51.92 -0.42 1.40 15 29 H 0.27 7.37 8.31 -40.82 -0.34 7.03 15 LS Contribution 288.64 15.07 4.35 4.35 Total: -1.00 -30.52 288.64 -6.90 -37.42 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: -3.38 Total: -3.18 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 0.02 Total: -6.29 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 1.04 Total: -39.06 kcal Atomic # 8 Polarization: 1.51 SS G_CDS: 0.20 Total: 1.71 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.72 Total: 16.07 kcal Atomic # 16 Polarization: -6.60 SS G_CDS: -4.42 Total: -11.02 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.52 -6.90 -37.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230998555.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.729 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds