Wall clock time and date at job start Mon Mar 30 2020 07:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81408 * 109.46929 * 2 1 4 4 C 1.81398 * 102.99823 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47137 * 179.97438 * 4 3 2 6 6 N 1.29946 * 126.28406 * 89.97530 * 5 4 3 7 7 O 1.21301 * 110.24604 * 179.97438 * 6 5 4 8 8 C 1.33636 * 109.81535 * 0.02562 * 7 6 5 9 9 C 1.50698 * 126.55292 * 179.97438 * 8 7 6 10 10 S 1.80998 * 109.47116 * 270.02365 * 9 8 7 11 11 C 1.76199 * 100.00013 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00250 * 0.02562 * 11 10 9 13 13 C 1.38798 * 120.00102 * 179.72368 * 11 10 9 14 14 N 1.31634 * 120.00298 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99861 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47644 * 89.99884 * 15 13 11 17 17 H 1.48506 * 109.47143 * 209.99830 * 15 13 11 18 18 H 1.48501 * 109.47120 * 329.99545 * 15 13 11 19 19 N 1.31133 * 106.89915 * 0.22073 * 8 7 6 20 20 H 1.09004 * 109.46900 * 59.99885 * 1 2 3 21 21 H 1.08999 * 109.47330 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47121 * 300.00199 * 1 2 3 23 23 H 1.09003 * 109.47071 * 240.00265 * 2 1 3 24 24 H 1.08998 * 109.47298 * 119.99945 * 2 1 3 25 25 H 1.09004 * 109.47422 * 59.99772 * 4 3 2 26 26 H 1.08997 * 109.47123 * 300.00408 * 4 3 2 27 27 H 1.09001 * 109.47434 * 150.02127 * 9 8 7 28 28 H 1.08999 * 109.47072 * 30.02606 * 9 8 7 29 29 H 0.96995 * 120.00138 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7104 0.0000 4 6 3.9370 1.5059 0.0008 5 6 4.5963 2.8611 0.0002 6 7 4.9319 3.5534 1.0474 7 8 5.4427 4.6013 0.7119 8 6 5.4820 4.6795 -0.6216 9 6 6.0369 5.8182 -1.4379 10 16 4.7247 7.0211 -1.7656 11 6 5.6255 8.2079 -2.7062 12 1 6.6743 8.0514 -2.9109 13 6 4.9857 9.3409 -3.1894 14 7 5.6587 10.2278 -3.8917 15 14 3.1698 9.6078 -2.8419 16 1 3.0144 10.3642 -1.5735 17 1 2.5608 10.3786 -3.9556 18 1 2.4905 8.2929 -2.7205 19 7 4.9407 3.5783 -1.0842 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 4.2406 0.9542 -0.8890 26 1 4.2398 0.9545 0.8909 27 1 6.4221 5.4343 -2.3825 28 1 6.8433 6.3015 -0.8863 29 1 5.2117 11.0197 -4.2290 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230998555.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:01 Heat of formation + Delta-G solvation = 37.268077 kcal Electronic energy + Delta-G solvation = -14271.736307 eV Core-core repulsion = 11642.832423 eV Total energy + Delta-G solvation = -2628.903884 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.039 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -46.78204 -37.31240 -35.03131 -34.68584 -33.68122 -30.96223 -29.89849 -27.88688 -25.04320 -24.37723 -22.78703 -19.96543 -19.43023 -18.56781 -17.36822 -17.15708 -16.43633 -16.12205 -15.82447 -15.72315 -15.52525 -14.91701 -14.62950 -14.38959 -13.51193 -13.44943 -13.32651 -13.21556 -13.03042 -12.98454 -12.33386 -12.26445 -12.21869 -11.91571 -11.22974 -11.18217 -10.95820 -10.60053 -9.09501 -8.84271 -8.52009 -6.26858 -0.32705 0.15060 1.02340 1.30430 1.32038 1.45904 1.49819 1.53828 1.74616 2.22146 2.34398 2.58767 2.78968 2.86843 3.63674 3.96489 4.03748 4.04525 4.06507 4.24106 4.43234 4.52302 4.59965 4.74114 4.85777 4.90316 5.23034 5.70698 6.13682 6.91393 6.92141 8.59871 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.027592 B = 0.004541 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.528418 B = 6164.151171 C = 6893.566302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.074 4.074 3 S -0.297 6.297 4 C 0.013 3.987 5 C 0.179 3.821 6 N -0.384 5.384 7 O 0.080 5.920 8 C 0.220 3.780 9 C 0.003 3.997 10 S -0.181 6.181 11 C -0.519 4.519 12 H 0.072 0.928 13 C 0.049 3.951 14 N -0.911 5.911 15 Si 0.910 3.090 16 H -0.261 1.261 17 H -0.261 1.261 18 H -0.236 1.236 19 N -0.480 5.480 20 H 0.056 0.944 21 H 0.099 0.901 22 H 0.058 0.942 23 H 0.099 0.901 24 H 0.101 0.899 25 H 0.132 0.868 26 H 0.132 0.868 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.927 -20.740 8.198 23.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.222 4.222 3 S -0.074 6.074 4 C -0.136 4.136 5 C -0.094 4.094 6 N -0.094 5.094 7 O 0.021 5.979 8 C -0.001 4.001 9 C -0.146 4.146 10 S 0.045 5.955 11 C -0.667 4.667 12 H 0.090 0.910 13 C -0.158 4.158 14 N -0.549 5.549 15 Si 0.732 3.268 16 H -0.185 1.185 17 H -0.185 1.185 18 H -0.159 1.159 19 N -0.216 5.216 20 H 0.075 0.925 21 H 0.118 0.882 22 H 0.077 0.923 23 H 0.118 0.882 24 H 0.120 0.880 25 H 0.150 0.850 26 H 0.150 0.850 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.845 -20.226 8.909 23.452 hybrid contribution 1.669 -0.063 -0.603 1.776 sum -6.176 -20.289 8.306 22.777 Atomic orbital electron populations 1.21544 0.91417 1.03959 1.02654 1.23474 1.00608 0.91356 1.06740 1.87776 1.03540 1.17772 1.98305 1.21512 0.93232 0.89482 1.09357 1.25314 1.00535 0.99957 0.83587 1.74596 1.15340 0.95429 1.24029 1.85304 1.57289 1.30548 1.24710 1.28005 0.94825 0.95504 0.81760 1.21631 1.00576 0.91316 1.01079 1.84524 1.17315 1.22663 1.71001 1.22228 0.98643 1.07395 1.38391 0.90952 1.25515 1.02604 0.94364 0.93268 1.69997 1.38650 1.11251 1.34957 0.85930 0.80301 0.81137 0.79398 1.18537 1.18488 1.15949 1.71941 1.16153 1.04125 1.29332 0.92491 0.88232 0.92316 0.88224 0.88037 0.85012 0.85026 0.85292 0.85060 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.92 71.98 0.71 -0.92 15 2 C -0.07 -0.97 6.66 71.98 0.48 -0.49 15 3 S -0.30 -7.06 21.72 -56.49 -1.23 -8.28 15 4 C 0.01 0.27 6.57 71.24 0.47 0.74 15 5 C 0.18 5.46 7.48 138.46 1.04 6.50 15 6 N -0.38 -12.60 12.16 -60.34 -0.73 -13.33 15 7 O 0.08 2.72 11.31 74.90 0.85 3.56 15 8 C 0.22 7.58 7.77 88.38 0.69 8.27 15 9 C 0.00 0.09 6.30 71.24 0.45 0.54 15 10 S -0.18 -8.37 19.39 -56.49 -1.10 -9.46 15 11 C -0.52 -28.44 10.04 67.95 0.68 -27.76 15 12 H 0.07 4.18 8.03 -2.91 -0.02 4.16 15 13 C 0.05 2.73 5.50 84.86 0.47 3.20 15 14 N -0.91 -53.47 13.97 21.65 0.30 -53.16 15 15 Si 0.91 42.73 27.74 68.60 1.90 44.63 15 16 H -0.26 -11.94 7.11 99.48 0.71 -11.23 15 17 H -0.26 -11.62 7.11 99.48 0.71 -10.92 15 18 H -0.24 -10.93 6.74 99.48 0.67 -10.26 15 19 N -0.48 -16.55 11.55 -303.23 -3.50 -20.05 15 20 H 0.06 0.81 8.14 -2.39 -0.02 0.79 15 21 H 0.10 0.69 8.14 -2.39 -0.02 0.68 15 22 H 0.06 0.79 8.14 -2.39 -0.02 0.77 15 23 H 0.10 1.03 8.14 -2.39 -0.02 1.01 15 24 H 0.10 0.98 8.14 -2.39 -0.02 0.96 15 25 H 0.13 2.30 8.14 -2.39 -0.02 2.28 15 26 H 0.13 2.14 8.14 -2.39 -0.02 2.12 15 27 H 0.13 4.37 8.14 -2.39 -0.02 4.35 15 28 H 0.13 4.15 8.14 -2.40 -0.02 4.13 15 29 H 0.28 15.12 8.31 -92.71 -0.77 14.35 15 Total: -1.00 -65.41 288.64 2.59 -62.82 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: 1.11 Total: 3.19 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 4.98 Total: -9.92 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -3.93 Total: -86.54 kcal Atomic # 8 Polarization: 2.72 SS G_CDS: 0.85 Total: 3.56 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.90 Total: 44.63 kcal Atomic # 16 Polarization: -15.42 SS G_CDS: -2.32 Total: -17.75 kcal Total: -65.41 2.59 -62.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230998555.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.091 kcal (2) G-P(sol) polarization free energy of solvation -65.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds