Wall clock time and date at job start Mon Mar 30 2020 06:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30514 * 1 3 3 Si 1.86793 * 119.99776 * 2 1 4 4 H 1.48503 * 109.47202 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47191 * 299.99610 * 3 2 1 6 6 H 1.48497 * 109.47519 * 60.00307 * 3 2 1 7 7 C 1.40373 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99832 * 179.97438 * 7 2 1 9 9 C 1.41434 * 120.00231 * 359.97438 * 7 2 1 10 10 O 1.22066 * 119.99525 * 0.02562 * 9 7 2 11 11 C 1.46516 * 120.00116 * 179.97438 * 9 7 2 12 12 C 1.37526 * 125.46400 * 179.97438 * 11 9 7 13 13 C 1.37036 * 113.24056 * 180.02562 * 12 11 9 14 14 Br 1.89103 * 122.45511 * 180.02562 * 13 12 11 15 15 C 1.34549 * 115.08862 * 359.97438 * 13 12 11 16 16 S 1.70596 * 110.98915 * 0.27247 * 15 13 12 17 17 H 0.97003 * 119.99911 * 0.02562 * 1 2 3 18 18 H 1.08002 * 123.37703 * 0.02562 * 12 11 9 19 19 H 1.08002 * 124.50194 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2390 1.6177 0.0000 4 1 3.6991 1.3464 -0.0006 5 1 1.8803 2.3964 -1.2126 6 1 1.8804 2.3964 1.2125 7 6 2.0070 -1.2157 -0.0005 8 1 3.0870 -1.2157 -0.0010 9 6 1.2998 -2.4405 -0.0005 10 8 0.0792 -2.4405 -0.0005 11 6 2.0324 -3.7094 -0.0017 12 6 1.4613 -4.9605 -0.0013 13 6 2.3822 -5.9753 -0.0020 14 35 1.8825 -7.7991 -0.0024 15 6 3.6679 -5.5789 -0.0035 16 16 3.7826 -3.8768 0.0035 17 1 -0.4850 0.8401 -0.0004 18 1 0.3941 -5.1265 -0.0005 19 1 4.5148 -6.2492 -0.0039 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237973791.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:49 Heat of formation + Delta-G solvation = -16.826996 kcal Electronic energy + Delta-G solvation = -9810.324794 eV Core-core repulsion = 7658.644839 eV Total energy + Delta-G solvation = -2151.679954 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 259.925 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.67039 -36.12240 -32.82713 -30.69282 -28.82415 -27.01637 -23.93409 -20.63188 -18.28597 -17.55147 -16.01611 -15.27612 -14.65406 -13.40560 -13.28840 -12.89861 -12.45332 -11.92457 -11.74698 -11.29712 -11.14384 -10.91095 -10.44345 -10.26261 -10.24532 -9.88812 -9.13173 -8.06936 -7.89713 -7.72924 -6.49433 -5.10189 1.21818 1.65541 2.35858 2.81902 2.86645 3.00559 3.05589 3.10309 3.89599 4.27806 5.35410 5.54260 5.76978 6.07715 6.46798 6.63607 6.86711 7.05983 7.81730 8.60279 8.61561 10.11670 10.32808 Molecular weight = 259.92amu Principal moments of inertia in cm(-1) A = 0.059958 B = 0.005914 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.880871 B = 4733.285104 C = 5190.322326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.727 5.727 2 C 0.079 3.921 3 Si 0.909 3.091 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.509 4.509 8 H 0.075 0.925 9 C 0.408 3.592 10 O -0.530 6.530 11 C -0.182 4.182 12 C -0.121 4.121 13 C -0.093 4.093 14 Br -0.057 7.057 15 C -0.268 4.268 16 S 0.228 5.772 17 H 0.277 0.723 18 H 0.149 0.851 19 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.283 -9.354 0.007 11.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.355 5.355 2 C -0.145 4.145 3 Si 0.732 3.268 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.541 4.541 8 H 0.093 0.907 9 C 0.302 3.698 10 O -0.420 6.420 11 C -0.303 4.303 12 C -0.150 4.150 13 C -0.187 4.187 14 Br 0.026 6.974 15 C -0.408 4.408 16 S 0.494 5.506 17 H 0.089 0.911 18 H 0.166 0.834 19 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.554 -8.987 0.014 11.740 hybrid contribution -0.481 -0.108 -0.007 0.493 sum 7.073 -9.095 0.007 11.522 Atomic orbital electron populations 1.69945 1.07625 1.28484 1.29431 1.25984 0.94705 1.01146 0.92672 0.86265 0.80889 0.80850 0.78781 1.18110 1.19588 1.19586 1.20854 0.94720 0.91515 1.47040 0.90736 1.17254 0.88373 0.84090 0.80037 1.90622 1.14206 1.87514 1.49670 1.27123 0.95781 1.01472 1.05904 1.20561 1.00576 0.89675 1.04212 1.20464 0.94581 0.90894 1.12730 1.96550 1.92947 1.09822 1.98080 1.25283 0.99608 1.02762 1.13141 1.82990 1.05799 0.95825 1.66008 0.91150 0.83357 0.82012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.25 11.72 55.57 0.65 -19.60 13 2 C 0.08 2.06 5.50 -17.31 -0.10 1.97 13 3 Si 0.91 18.49 29.56 -169.99 -5.03 13.47 13 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 13 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 13 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 13 7 C -0.51 -13.53 9.01 -37.56 -0.34 -13.87 13 8 H 0.07 1.79 7.08 -52.48 -0.37 1.42 13 9 C 0.41 11.32 6.89 -35.03 -0.24 11.08 13 10 O -0.53 -16.68 15.39 4.86 0.07 -16.60 13 11 C -0.18 -4.20 6.43 -36.51 -0.23 -4.44 13 12 C -0.12 -2.58 9.88 -40.28 -0.40 -2.98 13 13 C -0.09 -1.68 6.15 -41.32 -0.25 -1.94 13 14 Br -0.06 -0.88 33.86 -68.01 -2.30 -3.18 13 15 C -0.27 -4.43 10.77 29.43 0.32 -4.11 13 16 S 0.23 4.09 22.01 -107.50 -2.37 1.72 13 17 H 0.28 6.86 8.29 -40.82 -0.34 6.52 13 18 H 0.15 3.25 8.06 -52.49 -0.42 2.83 13 19 H 0.16 2.18 8.06 -52.49 -0.42 1.76 13 LS Contribution 219.98 15.07 3.32 3.32 Total: -1.00 -30.01 219.98 -7.25 -37.25 By element: Atomic # 1 Polarization: -1.74 SS G_CDS: -0.35 Total: -2.09 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -1.24 Total: -14.29 kcal Atomic # 7 Polarization: -20.25 SS G_CDS: 0.65 Total: -19.60 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.07 Total: -16.60 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.47 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -2.37 Total: 1.72 kcal Atomic # 35 Polarization: -0.88 SS G_CDS: -2.30 Total: -3.18 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -30.01 -7.25 -37.25 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237973791.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.427 kcal (2) G-P(sol) polarization free energy of solvation -30.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds