Wall clock time and date at job start Mon Mar 30 2020 07:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00056 * 2 1 4 4 H 1.48498 * 109.47154 * 239.99974 * 3 2 1 5 5 H 1.48501 * 109.46888 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47122 * 120.00112 * 3 2 1 7 7 C 1.37881 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99856 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99848 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47407 * 299.99717 * 9 7 2 11 11 N 1.46903 * 109.47316 * 59.99409 * 9 7 2 12 12 C 1.50701 * 109.47241 * 179.97438 * 9 7 2 13 13 C 1.38279 * 119.91497 * 99.99677 * 12 9 7 14 14 C 1.38225 * 120.08213 * 180.02562 * 13 12 9 15 15 Cl 1.73599 * 120.04479 * 179.72711 * 14 13 12 16 16 C 1.38964 * 119.91488 * 0.02562 * 14 13 12 17 17 N 1.39830 * 120.07972 * 179.97438 * 16 14 13 18 18 C 1.38952 * 119.83717 * 359.97438 * 16 14 13 19 19 Cl 1.73607 * 120.03833 * 180.02562 * 18 16 14 20 20 C 1.38217 * 119.92465 * 0.02819 * 18 16 14 21 21 H 0.96998 * 119.99804 * 359.97438 * 1 2 3 22 22 H 1.00896 * 111.00045 * 296.04867 * 11 9 7 23 23 H 1.00899 * 110.99703 * 59.99974 * 11 9 7 24 24 H 1.08004 * 119.96280 * 359.97438 * 13 12 9 25 25 H 0.97003 * 119.99817 * 359.97438 * 17 16 14 26 26 H 0.96994 * 120.00085 * 179.97438 * 17 16 14 27 27 H 1.07994 * 119.96612 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4068 -2.5772 -1.1992 12 6 2.2304 -3.6446 0.0005 13 6 2.5203 -4.3040 1.1809 14 6 3.4184 -5.3547 1.1850 15 17 3.7871 -6.1772 2.6686 16 6 4.0305 -5.7478 0.0009 17 7 4.9399 -6.8100 0.0012 18 6 3.7366 -5.0828 -1.1832 19 17 4.4977 -5.5700 -2.6655 20 6 2.8376 -4.0330 -1.1796 21 1 -0.4850 0.8400 0.0004 22 1 -0.3005 -1.8577 -1.1910 23 1 0.9651 -2.5259 -2.0381 24 1 2.0452 -3.9971 2.1010 25 1 5.1445 -7.2731 0.8286 26 1 5.3662 -7.0836 -0.8260 27 1 2.6083 -3.5159 -2.0996 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238587732.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:59 Heat of formation + Delta-G solvation = -17.807439 kcal Electronic energy + Delta-G solvation = -14902.722835 eV Core-core repulsion = 12131.510191 eV Total energy + Delta-G solvation = -2771.212645 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.018 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.64759 -37.66050 -37.62323 -36.63061 -35.03766 -32.99307 -31.48603 -29.48164 -27.66857 -24.50509 -23.84242 -21.71892 -18.60213 -18.46262 -18.13077 -17.17276 -16.38796 -16.01638 -15.45973 -15.20450 -15.14332 -14.65961 -14.35485 -13.63560 -13.27264 -13.23286 -12.81202 -12.76195 -12.36105 -12.18314 -12.12138 -12.03719 -11.91129 -11.45461 -11.30226 -10.65029 -9.61561 -9.18243 -8.46567 -8.03722 -6.33292 0.15999 0.49871 0.90426 1.40952 1.41865 1.43006 1.50308 2.38807 2.71298 2.79082 3.09947 3.90161 4.00216 4.41557 4.51939 4.59275 4.71201 4.97120 5.19561 5.30966 5.66743 5.68828 5.90641 6.12652 6.31387 6.68017 6.82132 6.96369 7.15607 7.42871 8.85855 Molecular weight = 260.02amu Principal moments of inertia in cm(-1) A = 0.020883 B = 0.006685 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.452567 B = 4187.643824 C = 4872.358058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.026 3.974 3 Si 0.954 3.046 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.276 1.276 7 C -0.558 4.558 8 H 0.048 0.952 9 C 0.252 3.748 10 H 0.017 0.983 11 N -0.842 5.842 12 C -0.083 4.083 13 C -0.067 4.067 14 C -0.106 4.106 15 Cl -0.057 7.057 16 C 0.223 3.777 17 N -0.857 5.857 18 C -0.108 4.108 19 Cl -0.057 7.057 20 C -0.049 4.049 21 H 0.267 0.733 22 H 0.346 0.654 23 H 0.318 0.682 24 H 0.131 0.869 25 H 0.408 0.592 26 H 0.408 0.592 27 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.940 -11.865 -0.625 14.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.175 4.175 3 Si 0.780 3.220 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.201 1.201 7 C -0.597 4.597 8 H 0.066 0.934 9 C 0.142 3.858 10 H 0.035 0.965 11 N -0.371 5.371 12 C -0.086 4.086 13 C -0.087 4.087 14 C -0.138 4.138 15 Cl -0.028 7.028 16 C 0.115 3.885 17 N -0.400 5.400 18 C -0.140 4.140 19 Cl -0.028 7.028 20 C -0.069 4.069 21 H 0.077 0.923 22 H 0.161 0.839 23 H 0.128 0.872 24 H 0.149 0.851 25 H 0.240 0.760 26 H 0.240 0.760 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.654 -12.591 -0.345 15.283 hybrid contribution 0.851 1.734 -0.062 1.932 sum 9.505 -10.858 -0.407 14.436 Atomic orbital electron populations 1.69823 1.06829 1.27984 1.50725 1.25671 0.95657 1.02063 0.94082 0.85678 0.78431 0.79229 0.78677 1.19795 1.20871 1.20111 1.22027 0.93382 0.92286 1.52025 0.93363 1.17695 0.88731 0.88536 0.90885 0.96460 1.59505 1.18176 1.55410 1.04047 1.19890 0.99193 0.97377 0.92115 1.20838 0.95963 0.93127 0.98783 1.20021 1.05895 1.01348 0.86549 1.98306 1.93942 1.77998 1.32555 1.16923 0.91314 0.89908 0.90310 1.42444 1.47732 1.35335 1.14503 1.20095 1.04935 1.02366 0.86599 1.98307 1.80729 1.91096 1.32669 1.20694 0.93312 0.94014 0.98890 0.92343 0.83906 0.87188 0.85134 0.76030 0.76028 0.85138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.51 11.54 21.45 0.25 -49.26 15 2 C 0.03 1.35 5.38 84.66 0.46 1.81 15 3 Si 0.95 42.11 29.54 68.60 2.03 44.14 15 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 6 H -0.28 -12.09 7.11 99.48 0.71 -11.38 15 7 C -0.56 -29.25 8.70 25.60 0.22 -29.03 15 8 H 0.05 2.56 7.74 -2.91 -0.02 2.54 15 9 C 0.25 12.26 2.95 43.42 0.13 12.39 15 10 H 0.02 0.94 8.00 -2.39 -0.02 0.92 15 11 N -0.84 -39.27 9.02 -174.95 -1.58 -40.85 15 12 C -0.08 -3.43 4.90 -19.84 -0.10 -3.52 15 13 C -0.07 -2.51 9.44 22.28 0.21 -2.30 15 14 C -0.11 -3.37 6.34 22.44 0.14 -3.23 15 15 Cl -0.06 -1.47 27.59 -2.72 -0.08 -1.55 15 16 C 0.22 6.59 6.75 38.21 0.26 6.84 15 17 N -0.86 -18.71 9.00 -51.21 -0.46 -19.17 15 18 C -0.11 -3.44 6.34 22.44 0.14 -3.30 15 19 Cl -0.06 -1.48 27.59 -2.72 -0.08 -1.55 15 20 C -0.05 -1.84 9.06 22.27 0.20 -1.64 15 21 H 0.27 13.86 8.31 -92.71 -0.77 13.09 15 22 H 0.35 17.41 7.08 -89.70 -0.63 16.78 15 23 H 0.32 13.92 7.33 -89.69 -0.66 13.27 15 24 H 0.13 4.81 8.03 -2.91 -0.02 4.78 15 25 H 0.41 7.63 7.51 -92.71 -0.70 6.94 15 26 H 0.41 7.65 7.51 -92.71 -0.70 6.96 15 27 H 0.13 4.84 6.65 -2.91 -0.02 4.82 15 Total: -1.00 -54.49 263.62 0.33 -54.16 By element: Atomic # 1 Polarization: 37.47 SS G_CDS: -1.42 Total: 36.06 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 1.66 Total: -21.97 kcal Atomic # 7 Polarization: -107.48 SS G_CDS: -1.79 Total: -109.28 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Atomic # 17 Polarization: -2.95 SS G_CDS: -0.15 Total: -3.10 kcal Total: -54.49 0.33 -54.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238587732.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.351 kcal (2) G-P(sol) polarization free energy of solvation -54.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds