Wall clock time and date at job start Mon Mar 30 2020 07:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 120.00231 * 2 1 4 4 H 1.48490 * 109.46765 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.46974 * 119.99951 * 3 2 1 6 6 H 1.48497 * 109.46839 * 239.99838 * 3 2 1 7 7 C 1.37882 * 119.99950 * 179.72620 * 2 1 3 8 8 H 1.08001 * 119.99879 * 343.68622 * 7 2 1 9 9 C 1.50693 * 120.00298 * 163.69615 * 7 2 1 10 10 H 1.08999 * 109.47415 * 54.52690 * 9 7 2 11 11 N 1.46905 * 109.46964 * 294.52636 * 9 7 2 12 12 C 1.50699 * 109.47108 * 174.52637 * 9 7 2 13 13 C 1.38276 * 119.91781 * 79.73101 * 12 9 7 14 14 C 1.38229 * 120.08463 * 179.72392 * 13 12 9 15 15 Cl 1.73594 * 120.04671 * 180.27091 * 14 13 12 16 16 C 1.38962 * 119.91170 * 0.56590 * 14 13 12 17 17 N 1.39825 * 120.07853 * 179.72615 * 16 14 13 18 18 C 1.38957 * 119.83921 * 359.70303 * 16 14 13 19 19 Cl 1.73605 * 120.04212 * 180.02562 * 18 16 14 20 20 C 1.38221 * 119.92196 * 0.02562 * 18 16 14 21 21 H 0.96998 * 120.00391 * 174.64843 * 1 2 3 22 22 H 1.00896 * 110.99743 * 305.84304 * 11 9 7 23 23 H 1.00898 * 110.99862 * 69.80167 * 11 9 7 24 24 H 1.08006 * 119.95997 * 359.97438 * 13 12 9 25 25 H 0.97008 * 119.99942 * 179.97438 * 17 16 14 26 26 H 0.96997 * 120.00336 * 359.97438 * 17 16 14 27 27 H 1.08002 * 119.96653 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0057 8 1 1.4970 -2.1093 0.2728 9 6 3.4659 -1.2222 -0.3605 10 1 4.0115 -0.5177 0.2673 11 7 3.6245 -0.8452 -1.7715 12 6 4.0106 -2.6110 -0.1474 13 6 3.7840 -3.5935 -1.0937 14 6 4.2868 -4.8670 -0.9044 15 17 4.0076 -6.0978 -2.0964 16 6 5.0109 -5.1625 0.2442 17 7 5.5163 -6.4512 0.4420 18 6 5.2319 -4.1742 1.1956 19 17 6.1364 -4.5373 2.6323 20 6 4.7308 -2.9014 0.9968 21 1 -0.4850 -0.8363 -0.0783 22 1 3.0522 -1.4246 -2.3670 23 1 3.4166 0.1324 -1.9101 24 1 3.2167 -3.3644 -1.9838 25 1 6.0219 -6.6561 1.2441 26 1 5.3613 -7.1403 -0.2229 27 1 4.9018 -2.1328 1.7360 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238615269.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:01 Heat of formation + Delta-G solvation = 1.887403 kcal Electronic energy + Delta-G solvation = -14942.747009 eV Core-core repulsion = 12172.388397 eV Total energy + Delta-G solvation = -2770.358612 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.018 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.37169 -36.48318 -36.34336 -35.34089 -33.51936 -31.68376 -30.20079 -28.25569 -25.61981 -22.73879 -22.48985 -19.99736 -17.80862 -17.20557 -17.01584 -15.75004 -14.98598 -14.24526 -14.06083 -13.94143 -13.75738 -13.11689 -12.88686 -12.39531 -12.09644 -11.97172 -11.33184 -11.09259 -11.00991 -10.78224 -10.69391 -10.27269 -10.19393 -9.99214 -9.32926 -8.56315 -8.35217 -7.68341 -7.24912 -6.50530 -4.28708 1.46150 1.80255 2.11193 2.62793 3.23377 3.33654 3.49546 3.87415 4.02631 4.33454 5.08931 5.16395 5.30818 5.73197 5.78069 5.88581 6.05210 6.27677 6.54560 6.68073 7.01135 7.25488 7.42408 7.72952 7.74717 8.16384 8.32410 8.45383 8.77137 9.42811 10.75800 Molecular weight = 260.02amu Principal moments of inertia in cm(-1) A = 0.021896 B = 0.007014 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.492224 B = 3991.114750 C = 4838.259154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.035 3.965 3 Si 1.042 2.958 4 H -0.284 1.284 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.627 4.627 8 H 0.059 0.941 9 C 0.218 3.782 10 H 0.045 0.955 11 N -0.858 5.858 12 C -0.047 4.047 13 C -0.042 4.042 14 C -0.103 4.103 15 Cl -0.079 7.079 16 C 0.214 3.786 17 N -0.874 5.874 18 C -0.102 4.102 19 Cl -0.079 7.079 20 C -0.062 4.062 21 H 0.271 0.729 22 H 0.328 0.672 23 H 0.331 0.669 24 H 0.135 0.865 25 H 0.399 0.601 26 H 0.399 0.601 27 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.712 -9.681 -0.130 14.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.172 4.172 3 Si 0.869 3.131 4 H -0.209 1.209 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.667 4.667 8 H 0.077 0.923 9 C 0.108 3.892 10 H 0.063 0.937 11 N -0.389 5.389 12 C -0.051 4.051 13 C -0.062 4.062 14 C -0.134 4.134 15 Cl -0.051 7.051 16 C 0.108 3.892 17 N -0.416 5.416 18 C -0.133 4.133 19 Cl -0.051 7.051 20 C -0.082 4.082 21 H 0.081 0.919 22 H 0.139 0.861 23 H 0.145 0.855 24 H 0.152 0.848 25 H 0.229 0.771 26 H 0.229 0.771 27 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 11.310 -8.340 0.066 14.052 hybrid contribution -0.775 -2.058 0.193 2.208 sum 10.534 -10.398 0.258 14.804 Atomic orbital electron populations 1.70812 1.07058 1.30765 1.44220 1.25821 0.96196 1.02364 0.92840 0.84042 0.75425 0.76198 0.77388 1.20926 1.20674 1.20058 1.22614 0.94149 0.96862 1.53067 0.92267 1.18208 0.95261 0.88133 0.87566 0.93706 1.59735 1.62558 1.08531 1.08067 1.19809 0.95648 0.97335 0.92266 1.20731 0.96523 0.89284 0.99661 1.20121 1.09344 0.91568 0.92396 1.98304 1.95553 1.54688 1.56511 1.16891 0.94456 0.85890 0.91952 1.42472 1.63140 1.08840 1.27180 1.20024 1.07681 0.94959 0.90655 1.98304 1.73999 1.94864 1.37931 1.20824 0.95598 0.93996 0.97779 0.91919 0.86089 0.85466 0.84751 0.77143 0.77128 0.84814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.17 13.69 55.43 0.76 -25.41 15 2 C 0.03 0.94 5.43 -17.82 -0.10 0.84 15 3 Si 1.04 23.41 26.54 -169.99 -4.51 18.90 15 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 6 H -0.27 -5.56 5.56 56.52 0.31 -5.24 15 7 C -0.63 -16.45 8.94 -34.44 -0.31 -16.76 15 8 H 0.06 1.72 7.99 -52.49 -0.42 1.30 15 9 C 0.22 4.87 2.47 -70.02 -0.17 4.69 15 10 H 0.05 1.01 6.68 -51.93 -0.35 0.67 15 11 N -0.86 -17.78 8.94 -6.65 -0.06 -17.84 15 12 C -0.05 -0.96 4.90 -104.59 -0.51 -1.47 15 13 C -0.04 -0.79 9.08 -39.57 -0.36 -1.15 15 14 C -0.10 -1.72 6.34 -39.32 -0.25 -1.96 15 15 Cl -0.08 -1.12 27.59 -51.86 -1.43 -2.55 15 16 C 0.21 3.37 6.75 -83.68 -0.57 2.80 15 17 N -0.87 -10.80 9.00 32.46 0.29 -10.51 15 18 C -0.10 -1.67 6.34 -39.32 -0.25 -1.92 15 19 Cl -0.08 -1.10 27.59 -51.86 -1.43 -2.53 15 20 C -0.06 -1.14 9.44 -39.57 -0.37 -1.51 15 21 H 0.27 7.94 8.73 -40.82 -0.36 7.59 15 22 H 0.33 6.60 7.54 -39.29 -0.30 6.31 15 23 H 0.33 6.88 5.70 -39.29 -0.22 6.66 15 24 H 0.13 2.49 6.79 -52.48 -0.36 2.13 15 25 H 0.40 4.35 7.51 -40.82 -0.31 4.04 15 26 H 0.40 4.39 7.51 -40.82 -0.31 4.08 15 27 H 0.13 2.33 8.03 -52.49 -0.42 1.90 15 LS Contribution 259.31 15.07 3.91 3.91 Total: -1.00 -27.59 259.31 -7.28 -34.87 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -1.92 Total: 17.61 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -2.89 Total: -16.45 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.99 Total: -53.76 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -4.51 Total: 18.90 kcal Atomic # 17 Polarization: -2.22 SS G_CDS: -2.86 Total: -5.09 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -27.59 -7.28 -34.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238615269.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.757 kcal (2) G-P(sol) polarization free energy of solvation -27.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds