Wall clock time and date at job start Mon Mar 30 2020 07:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 120.00231 * 2 1 4 4 H 1.48490 * 109.46765 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.46974 * 119.99951 * 3 2 1 6 6 H 1.48497 * 109.46839 * 239.99838 * 3 2 1 7 7 C 1.37882 * 119.99950 * 179.72620 * 2 1 3 8 8 H 1.08001 * 119.99879 * 343.68622 * 7 2 1 9 9 C 1.50693 * 120.00298 * 163.69615 * 7 2 1 10 10 H 1.08999 * 109.47415 * 54.52690 * 9 7 2 11 11 N 1.46905 * 109.46964 * 294.52636 * 9 7 2 12 12 C 1.50699 * 109.47108 * 174.52637 * 9 7 2 13 13 C 1.38276 * 119.91781 * 79.73101 * 12 9 7 14 14 C 1.38229 * 120.08463 * 179.72392 * 13 12 9 15 15 Cl 1.73594 * 120.04671 * 180.27091 * 14 13 12 16 16 C 1.38962 * 119.91170 * 0.56590 * 14 13 12 17 17 N 1.39825 * 120.07853 * 179.72615 * 16 14 13 18 18 C 1.38957 * 119.83921 * 359.70303 * 16 14 13 19 19 Cl 1.73605 * 120.04212 * 180.02562 * 18 16 14 20 20 C 1.38221 * 119.92196 * 0.02562 * 18 16 14 21 21 H 0.96998 * 120.00391 * 174.64843 * 1 2 3 22 22 H 1.00896 * 110.99743 * 305.84304 * 11 9 7 23 23 H 1.00898 * 110.99862 * 69.80167 * 11 9 7 24 24 H 1.08006 * 119.95997 * 359.97438 * 13 12 9 25 25 H 0.97008 * 119.99942 * 179.97438 * 17 16 14 26 26 H 0.96997 * 120.00336 * 359.97438 * 17 16 14 27 27 H 1.08002 * 119.96653 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0057 8 1 1.4970 -2.1093 0.2728 9 6 3.4659 -1.2222 -0.3605 10 1 4.0115 -0.5177 0.2673 11 7 3.6245 -0.8452 -1.7715 12 6 4.0106 -2.6110 -0.1474 13 6 3.7840 -3.5935 -1.0937 14 6 4.2868 -4.8670 -0.9044 15 17 4.0076 -6.0978 -2.0964 16 6 5.0109 -5.1625 0.2442 17 7 5.5163 -6.4512 0.4420 18 6 5.2319 -4.1742 1.1956 19 17 6.1364 -4.5373 2.6323 20 6 4.7308 -2.9014 0.9968 21 1 -0.4850 -0.8363 -0.0783 22 1 3.0522 -1.4246 -2.3670 23 1 3.4166 0.1324 -1.9101 24 1 3.2167 -3.3644 -1.9838 25 1 6.0219 -6.6561 1.2441 26 1 5.3613 -7.1403 -0.2229 27 1 4.9018 -2.1328 1.7360 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238615269.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:01 Heat of formation + Delta-G solvation = -17.582598 kcal Electronic energy + Delta-G solvation = -14943.591291 eV Core-core repulsion = 12172.388397 eV Total energy + Delta-G solvation = -2771.202895 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.018 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.71983 -37.75709 -37.69081 -36.71515 -35.08870 -33.56274 -31.55585 -29.66897 -27.47900 -24.26661 -23.92752 -21.59107 -19.79544 -18.53170 -18.25896 -17.22264 -16.46578 -15.69479 -15.55904 -15.29464 -15.18496 -14.76258 -14.56841 -14.25468 -13.61478 -13.28730 -12.83326 -12.57387 -12.20702 -12.14888 -11.98215 -11.93129 -11.75648 -11.52207 -11.23108 -10.62631 -9.67966 -9.46833 -8.81936 -8.34567 -6.43694 0.09914 0.43436 0.85413 1.35892 1.46068 1.53603 1.72828 2.46454 2.62129 2.74039 3.02943 3.83314 3.87637 4.29636 4.36289 4.46058 4.50953 4.89058 4.97059 5.16406 5.54524 5.71298 5.83742 5.99509 6.25754 6.44100 6.57937 6.77000 6.84310 7.36268 8.59290 Molecular weight = 260.02amu Principal moments of inertia in cm(-1) A = 0.021896 B = 0.007014 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.492224 B = 3991.114750 C = 4838.259154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 1.081 2.919 4 H -0.292 1.292 5 H -0.265 1.265 6 H -0.238 1.238 7 C -0.621 4.621 8 H 0.017 0.983 9 C 0.223 3.777 10 H 0.047 0.953 11 N -0.845 5.845 12 C -0.080 4.080 13 C -0.051 4.051 14 C -0.111 4.111 15 Cl -0.057 7.057 16 C 0.224 3.776 17 N -0.857 5.857 18 C -0.107 4.107 19 Cl -0.054 7.054 20 C -0.068 4.068 21 H 0.254 0.746 22 H 0.330 0.670 23 H 0.331 0.669 24 H 0.128 0.872 25 H 0.409 0.591 26 H 0.408 0.592 27 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.936 -10.353 -0.111 16.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.213 4.213 3 Si 0.902 3.098 4 H -0.219 1.219 5 H -0.190 1.190 6 H -0.162 1.162 7 C -0.661 4.661 8 H 0.035 0.965 9 C 0.113 3.887 10 H 0.065 0.935 11 N -0.376 5.376 12 C -0.083 4.083 13 C -0.070 4.070 14 C -0.142 4.142 15 Cl -0.028 7.028 16 C 0.116 3.884 17 N -0.400 5.400 18 C -0.139 4.139 19 Cl -0.026 7.026 20 C -0.087 4.087 21 H 0.063 0.937 22 H 0.142 0.858 23 H 0.146 0.854 24 H 0.146 0.854 25 H 0.240 0.760 26 H 0.240 0.760 27 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 13.570 -9.075 0.080 16.325 hybrid contribution -1.433 -2.067 0.220 2.525 sum 12.138 -11.143 0.300 16.479 Atomic orbital electron populations 1.70946 1.08436 1.29743 1.47538 1.27206 0.96047 1.06113 0.91953 0.83570 0.74823 0.71769 0.79597 1.21883 1.19049 1.16206 1.22758 0.96469 0.95028 1.51844 0.96488 1.18049 0.92542 0.90029 0.88079 0.93487 1.59691 1.62231 1.08555 1.07109 1.19650 0.98043 0.96618 0.93997 1.20693 0.96863 0.90141 0.99332 1.20112 1.09251 0.91552 0.93320 1.98308 1.95461 1.53390 1.55681 1.16949 0.93383 0.86884 0.91213 1.42458 1.62048 1.07719 1.27728 1.20028 1.07670 0.94469 0.91728 1.98311 1.73218 1.94636 1.36387 1.20885 0.95538 0.95091 0.97234 0.93746 0.85805 0.85437 0.85411 0.75961 0.76030 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.17 13.69 21.45 0.29 -55.88 15 2 C -0.01 -0.74 5.43 84.66 0.46 -0.28 15 3 Si 1.08 46.54 26.54 68.60 1.82 48.36 15 4 H -0.29 -13.01 7.11 99.48 0.71 -12.30 15 5 H -0.27 -10.74 7.11 99.48 0.71 -10.04 15 6 H -0.24 -8.77 5.56 99.48 0.55 -8.22 15 7 C -0.62 -33.32 8.94 25.60 0.23 -33.09 15 8 H 0.02 1.02 7.99 -2.91 -0.02 1.00 15 9 C 0.22 9.89 2.47 43.42 0.11 9.99 15 10 H 0.05 2.06 6.68 -2.39 -0.02 2.05 15 11 N -0.85 -34.15 8.94 -174.96 -1.56 -35.71 15 12 C -0.08 -3.19 4.90 -19.84 -0.10 -3.29 15 13 C -0.05 -1.87 9.08 22.28 0.20 -1.67 15 14 C -0.11 -3.53 6.34 22.44 0.14 -3.39 15 15 Cl -0.06 -1.51 27.59 -2.72 -0.08 -1.59 15 16 C 0.22 6.56 6.75 38.21 0.26 6.82 15 17 N -0.86 -18.66 9.00 -51.22 -0.46 -19.12 15 18 C -0.11 -3.32 6.34 22.44 0.14 -3.18 15 19 Cl -0.05 -1.37 27.59 -2.72 -0.08 -1.44 15 20 C -0.07 -2.42 9.44 22.28 0.21 -2.21 15 21 H 0.25 15.65 8.73 -92.71 -0.81 14.84 15 22 H 0.33 13.19 7.54 -89.70 -0.68 12.51 15 23 H 0.33 13.14 5.70 -89.70 -0.51 12.63 15 24 H 0.13 4.76 6.79 -2.91 -0.02 4.74 15 25 H 0.41 7.57 7.51 -92.70 -0.70 6.88 15 26 H 0.41 7.70 7.51 -92.71 -0.70 7.00 15 27 H 0.14 4.67 8.03 -2.91 -0.02 4.64 15 Total: -1.00 -60.01 259.31 0.09 -59.92 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: -1.50 Total: 35.74 kcal Atomic # 6 Polarization: -31.94 SS G_CDS: 1.65 Total: -30.28 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -1.73 Total: -110.71 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.82 Total: 48.36 kcal Atomic # 17 Polarization: -2.88 SS G_CDS: -0.15 Total: -3.03 kcal Total: -60.01 0.09 -59.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238615269.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.336 kcal (2) G-P(sol) polarization free energy of solvation -60.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds