Wall clock time and date at job start Mon Mar 30 2020 06:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47697 * 2 1 4 4 C 1.50700 * 109.46939 * 239.99930 * 2 1 3 5 5 H 1.08004 * 120.00562 * 245.54863 * 4 2 1 6 6 C 1.37881 * 119.99880 * 65.54963 * 4 2 1 7 7 N 1.31519 * 119.99729 * 5.21833 * 6 4 2 8 8 Si 1.86799 * 120.00183 * 185.22120 * 6 4 2 9 9 H 1.48505 * 109.47179 * 94.99851 * 8 6 4 10 10 H 1.48499 * 109.47239 * 214.99916 * 8 6 4 11 11 H 1.48505 * 109.47068 * 335.00044 * 8 6 4 12 12 N 1.46903 * 109.47020 * 120.00468 * 2 1 3 13 13 C 1.47852 * 110.99852 * 179.87072 * 12 2 1 14 14 C 1.54907 * 104.79489 * 213.63595 * 13 12 2 15 15 C 1.55142 * 101.65284 * 37.06856 * 14 13 12 16 16 H 1.09004 * 110.70162 * 82.73263 * 15 14 13 17 17 C 1.50699 * 110.70277 * 205.96142 * 15 14 13 18 18 C 1.38235 * 120.00177 * 35.19542 * 17 15 14 19 19 C 1.38238 * 120.00094 * 179.75950 * 18 17 15 20 20 C 1.38237 * 119.99471 * 0.51162 * 19 18 17 21 21 C 1.38229 * 120.00178 * 359.74328 * 20 19 18 22 22 C 1.38228 * 120.00210 * 359.97438 * 21 20 19 23 23 C 1.47443 * 111.00346 * 59.03218 * 12 2 1 24 24 H 1.09004 * 109.88768 * 3.68355 * 23 12 2 25 25 C 1.53007 * 109.88487 * 242.66369 * 23 12 2 26 26 H 1.08999 * 109.47304 * 174.80476 * 1 2 3 27 27 H 1.09007 * 109.46844 * 294.79847 * 1 2 3 28 28 H 1.08997 * 109.47115 * 54.79881 * 1 2 3 29 29 H 0.96997 * 119.99719 * 179.97438 * 7 6 4 30 30 H 1.08998 * 110.37169 * 94.80473 * 13 12 2 31 31 H 1.09001 * 110.46560 * 332.50991 * 13 12 2 32 32 H 1.09000 * 110.98796 * 155.16323 * 14 13 12 33 33 H 1.09000 * 110.98905 * 278.97459 * 14 13 12 34 34 H 1.07997 * 119.99568 * 359.97438 * 18 17 15 35 35 H 1.07996 * 120.00155 * 180.23014 * 19 18 17 36 36 H 1.07999 * 119.99659 * 179.71968 * 20 19 18 37 37 H 1.08008 * 119.99708 * 179.97438 * 21 20 19 38 38 H 1.08008 * 119.99825 * 179.97438 * 22 21 20 39 39 H 1.09004 * 109.47349 * 56.94295 * 25 23 12 40 40 H 1.09005 * 109.46720 * 176.93966 * 25 23 12 41 41 H 1.08993 * 109.46923 * 296.93881 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5773 -1.6379 -1.1340 6 6 1.7961 -0.1764 -2.4795 7 7 1.2236 1.0022 -2.5932 8 14 2.2890 -1.1269 -4.0102 9 1 1.1234 -1.8995 -4.5099 10 1 2.7398 -0.1771 -5.0590 11 1 3.3958 -2.0598 -3.6785 12 7 2.0196 -0.6926 1.1994 13 6 3.4976 -0.7150 1.2320 14 6 3.8580 -2.0622 1.9064 15 6 2.7638 -3.0016 1.3343 16 1 3.0461 -3.3650 0.3462 17 6 2.5054 -4.1520 2.2729 18 6 2.5753 -3.9579 3.6398 19 6 2.3333 -5.0120 4.5008 20 6 2.0319 -6.2626 3.9947 21 6 1.9672 -6.4578 2.6278 22 6 2.2034 -5.4024 1.7669 23 6 1.5280 -2.0819 1.2451 24 1 0.9615 -2.3047 0.3409 25 6 0.6417 -2.2801 2.4765 26 1 -0.3634 -1.0234 -0.0931 27 1 -0.3633 0.4311 0.9330 28 1 -0.3633 0.5924 -0.8397 29 1 1.0578 1.3780 -3.4719 30 1 3.8768 0.1186 1.8230 31 1 3.9018 -0.6770 0.2204 32 1 4.8526 -2.3942 1.6084 33 1 3.7814 -1.9886 2.9912 34 1 2.8155 -2.9820 4.0350 35 1 2.3843 -4.8596 5.5687 36 1 1.8473 -7.0872 4.6673 37 1 1.7320 -7.4350 2.2324 38 1 2.1532 -5.5551 0.6989 39 1 -0.1784 -1.5624 2.4532 40 1 0.2384 -3.2928 2.4746 41 1 1.2336 -2.1264 3.3787 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246550049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:19 Heat of formation + Delta-G solvation = 26.048810 kcal Electronic energy + Delta-G solvation = -20106.008924 eV Core-core repulsion = 17371.346909 eV Total energy + Delta-G solvation = -2734.662015 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.93134 -37.91508 -34.06687 -31.99577 -30.82074 -30.75963 -29.47361 -27.16367 -25.33473 -24.97515 -22.49411 -22.11689 -20.78147 -19.81239 -18.58152 -16.62289 -16.21204 -15.84407 -15.02666 -14.69354 -14.27870 -13.94905 -13.46747 -13.28616 -12.94606 -12.84327 -12.48252 -12.23775 -11.79559 -11.65969 -11.59592 -11.25405 -10.96706 -10.89363 -10.77464 -10.64164 -10.44753 -10.21992 -9.95095 -9.86420 -9.85112 -9.74491 -9.15152 -8.71956 -8.39789 -8.38860 -7.14286 -6.01163 -4.10486 1.54987 1.56713 3.25633 3.33706 3.35538 3.95754 4.39478 4.94302 4.96294 5.09499 5.13289 5.25898 5.27158 5.36991 5.52361 5.62195 5.70398 5.76487 6.00138 6.13810 6.17624 6.20303 6.22457 6.29013 6.50207 6.55315 6.62645 6.65450 6.67496 6.72174 6.84873 6.90443 6.95475 7.02490 7.06876 7.16387 7.20287 7.59451 7.67519 7.94014 8.17382 8.31758 8.43813 9.00290 9.55849 11.01740 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.026044 B = 0.006130 C = 0.005644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.852089 B = 4566.654713 C = 4959.442256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.200 3.800 3 H 0.044 0.956 4 C -0.540 4.540 5 H 0.057 0.943 6 C 0.069 3.931 7 N -0.886 5.886 8 Si 0.883 3.117 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.525 5.525 13 C 0.045 3.955 14 C -0.122 4.122 15 C -0.071 4.071 16 H 0.080 0.920 17 C -0.048 4.048 18 C -0.112 4.112 19 C -0.123 4.123 20 C -0.135 4.135 21 C -0.121 4.121 22 C -0.122 4.122 23 C 0.088 3.912 24 H 0.076 0.924 25 C -0.132 4.132 26 H 0.029 0.971 27 H 0.018 0.982 28 H 0.066 0.934 29 H 0.261 0.739 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.051 0.949 40 H 0.043 0.957 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.237 -10.482 10.791 15.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.093 3.907 3 H 0.062 0.938 4 C -0.579 4.579 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.711 3.289 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.249 5.249 13 C -0.083 4.083 14 C -0.160 4.160 15 C -0.090 4.090 16 H 0.099 0.901 17 C -0.049 4.049 18 C -0.130 4.130 19 C -0.142 4.142 20 C -0.153 4.153 21 C -0.140 4.140 22 C -0.140 4.140 23 C -0.021 4.021 24 H 0.094 0.906 25 C -0.190 4.190 26 H 0.048 0.952 27 H 0.037 0.963 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.144 0.856 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.974 -10.035 11.070 15.071 hybrid contribution 0.483 -0.971 -1.790 2.092 sum 2.457 -11.006 9.280 14.604 Atomic orbital electron populations 1.21748 0.98154 0.99383 0.98987 1.19423 0.91917 0.94745 0.84607 0.93819 1.21728 1.36057 1.08364 0.91776 0.92518 1.24921 0.95032 0.94591 0.98831 1.69937 1.42941 1.15848 1.23649 0.86723 0.78744 0.79992 0.83411 1.20746 1.21236 1.20013 1.63898 1.06561 1.12955 1.41467 1.22899 0.90055 0.95180 1.00139 1.22844 0.97364 0.95732 1.00090 1.21502 0.97320 0.92981 0.97202 0.90130 1.19822 0.96726 0.94221 0.94099 1.21158 1.00025 0.98832 0.92951 1.21089 1.00523 0.93187 0.99351 1.21028 1.01857 0.97150 0.95287 1.21058 1.00678 0.98646 0.93570 1.21089 1.00525 0.92638 0.99771 1.22099 0.93880 0.88075 0.98092 0.90623 1.21948 0.99321 0.99485 0.98207 0.95219 0.96329 0.91506 0.92946 0.92154 0.91737 0.91963 0.91274 0.85650 0.86569 0.86766 0.86615 0.86323 0.93026 0.93841 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.98 8.72 37.16 0.32 -2.66 16 2 C 0.20 4.93 2.28 -68.86 -0.16 4.77 16 3 H 0.04 1.21 8.12 -51.93 -0.42 0.79 16 4 C -0.54 -14.16 6.14 -34.44 -0.21 -14.37 16 5 H 0.06 1.48 6.40 -52.48 -0.34 1.15 16 6 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 7 N -0.89 -25.00 12.00 55.43 0.67 -24.33 16 8 Si 0.88 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.53 -11.06 4.84 -216.82 -1.05 -12.11 16 13 C 0.05 0.87 6.38 -2.29 -0.01 0.86 16 14 C -0.12 -1.97 6.35 -24.59 -0.16 -2.13 16 15 C -0.07 -1.20 2.90 -89.96 -0.26 -1.46 16 16 H 0.08 1.46 7.81 -51.93 -0.41 1.05 16 17 C -0.05 -0.72 3.64 -104.62 -0.38 -1.10 16 18 C -0.11 -1.51 6.96 -39.58 -0.28 -1.79 16 19 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 20 C -0.14 -1.56 10.05 -39.59 -0.40 -1.96 16 21 C -0.12 -1.48 10.05 -39.59 -0.40 -1.88 16 22 C -0.12 -1.71 9.69 -39.59 -0.38 -2.09 16 23 C 0.09 1.67 1.79 -66.73 -0.12 1.55 16 24 H 0.08 1.66 5.56 -51.93 -0.29 1.37 16 25 C -0.13 -2.25 8.10 37.16 0.30 -1.95 16 26 H 0.03 0.68 6.61 -51.93 -0.34 0.34 16 27 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 28 H 0.07 1.74 6.86 -51.93 -0.36 1.38 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.40 6.40 -51.93 -0.33 1.06 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.02 5.80 -51.93 -0.30 0.72 16 34 H 0.13 1.65 5.31 -52.49 -0.28 1.37 16 35 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.11 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 38 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.04 0.70 7.25 -51.93 -0.38 0.33 16 41 H 0.05 0.84 5.84 -51.93 -0.30 0.54 16 LS Contribution 311.15 15.07 4.69 4.69 Total: -1.00 -27.54 311.15 -9.60 -37.14 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.26 Total: 2.95 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: -2.62 Total: -24.30 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: -0.38 Total: -36.44 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.54 -9.60 -37.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246550049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.192 kcal (2) G-P(sol) polarization free energy of solvation -27.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds