Wall clock time and date at job start Mon Mar 30 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47697 * 2 1 4 4 C 1.50700 * 109.46939 * 239.99930 * 2 1 3 5 5 H 1.08004 * 120.00562 * 245.54863 * 4 2 1 6 6 C 1.37881 * 119.99880 * 65.54963 * 4 2 1 7 7 N 1.31519 * 119.99729 * 5.21833 * 6 4 2 8 8 Si 1.86799 * 120.00183 * 185.22120 * 6 4 2 9 9 H 1.48505 * 109.47179 * 94.99851 * 8 6 4 10 10 H 1.48499 * 109.47239 * 214.99916 * 8 6 4 11 11 H 1.48505 * 109.47068 * 335.00044 * 8 6 4 12 12 N 1.46903 * 109.47020 * 120.00468 * 2 1 3 13 13 C 1.47852 * 110.99852 * 179.87072 * 12 2 1 14 14 C 1.54907 * 104.79489 * 213.63595 * 13 12 2 15 15 C 1.55142 * 101.65284 * 37.06856 * 14 13 12 16 16 H 1.09004 * 110.70162 * 82.73263 * 15 14 13 17 17 C 1.50699 * 110.70277 * 205.96142 * 15 14 13 18 18 C 1.38235 * 120.00177 * 35.19542 * 17 15 14 19 19 C 1.38238 * 120.00094 * 179.75950 * 18 17 15 20 20 C 1.38237 * 119.99471 * 0.51162 * 19 18 17 21 21 C 1.38229 * 120.00178 * 359.74328 * 20 19 18 22 22 C 1.38228 * 120.00210 * 359.97438 * 21 20 19 23 23 C 1.47443 * 111.00346 * 59.03218 * 12 2 1 24 24 H 1.09004 * 109.88768 * 3.68355 * 23 12 2 25 25 C 1.53007 * 109.88487 * 242.66369 * 23 12 2 26 26 H 1.08999 * 109.47304 * 174.80476 * 1 2 3 27 27 H 1.09007 * 109.46844 * 294.79847 * 1 2 3 28 28 H 1.08997 * 109.47115 * 54.79881 * 1 2 3 29 29 H 0.96997 * 119.99719 * 179.97438 * 7 6 4 30 30 H 1.08998 * 110.37169 * 94.80473 * 13 12 2 31 31 H 1.09001 * 110.46560 * 332.50991 * 13 12 2 32 32 H 1.09000 * 110.98796 * 155.16323 * 14 13 12 33 33 H 1.09000 * 110.98905 * 278.97459 * 14 13 12 34 34 H 1.07997 * 119.99568 * 359.97438 * 18 17 15 35 35 H 1.07996 * 120.00155 * 180.23014 * 19 18 17 36 36 H 1.07999 * 119.99659 * 179.71968 * 20 19 18 37 37 H 1.08008 * 119.99708 * 179.97438 * 21 20 19 38 38 H 1.08008 * 119.99825 * 179.97438 * 22 21 20 39 39 H 1.09004 * 109.47349 * 56.94295 * 25 23 12 40 40 H 1.09005 * 109.46720 * 176.93966 * 25 23 12 41 41 H 1.08993 * 109.46923 * 296.93881 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5773 -1.6379 -1.1340 6 6 1.7961 -0.1764 -2.4795 7 7 1.2236 1.0022 -2.5932 8 14 2.2890 -1.1269 -4.0102 9 1 1.1234 -1.8995 -4.5099 10 1 2.7398 -0.1771 -5.0590 11 1 3.3958 -2.0598 -3.6785 12 7 2.0196 -0.6926 1.1994 13 6 3.4976 -0.7150 1.2320 14 6 3.8580 -2.0622 1.9064 15 6 2.7638 -3.0016 1.3343 16 1 3.0461 -3.3650 0.3462 17 6 2.5054 -4.1520 2.2729 18 6 2.5753 -3.9579 3.6398 19 6 2.3333 -5.0120 4.5008 20 6 2.0319 -6.2626 3.9947 21 6 1.9672 -6.4578 2.6278 22 6 2.2034 -5.4024 1.7669 23 6 1.5280 -2.0819 1.2451 24 1 0.9615 -2.3047 0.3409 25 6 0.6417 -2.2801 2.4765 26 1 -0.3634 -1.0234 -0.0931 27 1 -0.3633 0.4311 0.9330 28 1 -0.3633 0.5924 -0.8397 29 1 1.0578 1.3780 -3.4719 30 1 3.8768 0.1186 1.8230 31 1 3.9018 -0.6770 0.2204 32 1 4.8526 -2.3942 1.6084 33 1 3.7814 -1.9886 2.9912 34 1 2.8155 -2.9820 4.0350 35 1 2.3843 -4.8596 5.5687 36 1 1.8473 -7.0872 4.6673 37 1 1.7320 -7.4350 2.2324 38 1 2.1532 -5.5551 0.6989 39 1 -0.1784 -1.5624 2.4532 40 1 0.2384 -3.2928 2.4746 41 1 1.2336 -2.1264 3.3787 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246550049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:18 Heat of formation + Delta-G solvation = 11.702454 kcal Electronic energy + Delta-G solvation = -20106.631029 eV Core-core repulsion = 17371.346909 eV Total energy + Delta-G solvation = -2735.284120 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.21529 -39.22905 -35.81164 -33.69899 -32.31406 -31.77718 -30.93073 -28.70087 -27.19051 -26.61050 -23.57308 -23.37772 -22.38583 -21.29606 -20.11924 -18.21175 -17.65586 -17.46343 -16.40283 -16.07695 -15.57315 -15.39232 -14.92841 -14.68628 -14.43970 -14.15186 -14.01634 -13.72270 -13.36194 -13.06648 -12.96075 -12.91381 -12.80608 -12.52665 -12.36670 -12.09526 -11.93855 -11.75768 -11.66371 -11.62508 -11.28461 -11.24923 -11.12829 -10.49775 -9.68723 -9.45822 -8.92851 -8.07439 -6.25124 0.55888 0.60641 1.34559 1.36965 1.45309 2.38578 2.96928 3.14974 3.44887 3.78416 3.83671 4.04583 4.18417 4.24465 4.36371 4.44438 4.53943 4.64875 4.71557 4.73443 4.82537 4.89170 4.93009 5.01131 5.06674 5.11052 5.15329 5.16203 5.24716 5.26443 5.33623 5.41812 5.49345 5.56948 5.68572 5.70744 5.72139 5.88121 5.90267 6.20475 6.22876 6.40399 6.61905 6.96154 7.44258 8.92148 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.026044 B = 0.006130 C = 0.005644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.852089 B = 4566.654713 C = 4959.442256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.205 3.795 3 H 0.007 0.993 4 C -0.540 4.540 5 H 0.052 0.948 6 C 0.020 3.980 7 N -0.916 5.916 8 Si 0.943 3.057 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.526 5.526 13 C 0.041 3.959 14 C -0.109 4.109 15 C -0.064 4.064 16 H 0.059 0.941 17 C -0.065 4.065 18 C -0.118 4.118 19 C -0.123 4.123 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.139 4.139 23 C 0.087 3.913 24 H 0.041 0.959 25 C -0.118 4.118 26 H 0.030 0.970 27 H 0.032 0.968 28 H 0.041 0.959 29 H 0.261 0.739 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.129 0.871 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.137 0.863 38 H 0.113 0.887 39 H 0.040 0.960 40 H 0.052 0.948 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 -12.734 12.742 18.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.097 3.903 3 H 0.025 0.975 4 C -0.579 4.579 5 H 0.070 0.930 6 C -0.179 4.179 7 N -0.555 5.555 8 Si 0.769 3.231 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.249 5.249 13 C -0.087 4.087 14 C -0.147 4.147 15 C -0.083 4.083 16 H 0.078 0.922 17 C -0.065 4.065 18 C -0.136 4.136 19 C -0.140 4.140 20 C -0.149 4.149 21 C -0.142 4.142 22 C -0.157 4.157 23 C -0.021 4.021 24 H 0.059 0.941 25 C -0.176 4.176 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.147 0.853 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.155 0.845 38 H 0.131 0.869 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.402 -12.302 13.031 18.081 hybrid contribution 0.359 -0.314 -2.331 2.380 sum 2.761 -12.616 10.700 16.771 Atomic orbital electron populations 1.21553 0.97684 0.99004 0.98595 1.19187 0.92227 0.93098 0.85767 0.97493 1.21913 1.35448 1.07990 0.92592 0.92961 1.25624 0.95330 0.95386 1.01599 1.70053 1.44174 1.17127 1.24181 0.85778 0.78482 0.78762 0.80064 1.20361 1.20953 1.19563 1.63873 1.07721 1.14202 1.39140 1.22937 0.88906 0.97755 0.99102 1.22793 0.97771 0.93165 1.00932 1.21313 0.96243 0.93666 0.97097 0.92248 1.19631 0.98923 0.93638 0.94354 1.21224 1.00330 0.99675 0.92371 1.21420 0.99293 0.92769 1.00551 1.21426 1.00188 0.97936 0.95359 1.21337 0.99909 0.98994 0.93928 1.21192 1.01348 0.93138 1.00043 1.22076 0.94958 0.87422 0.97689 0.94050 1.21816 0.98589 0.99660 0.97547 0.95050 0.94889 0.93984 0.92976 0.91148 0.94718 0.90548 0.89145 0.85314 0.83933 0.83858 0.84524 0.86904 0.94095 0.92922 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.43 8.72 71.98 0.63 -4.80 16 2 C 0.20 10.48 2.28 44.17 0.10 10.58 16 3 H 0.01 0.41 8.12 -2.39 -0.02 0.39 16 4 C -0.54 -29.25 6.14 25.60 0.16 -29.10 16 5 H 0.05 2.83 6.40 -2.91 -0.02 2.81 16 6 C 0.02 1.13 5.29 84.65 0.45 1.57 16 7 N -0.92 -53.25 12.00 21.45 0.26 -53.00 16 8 Si 0.94 43.87 29.54 68.60 2.03 45.90 16 9 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 N -0.53 -22.47 4.84 -839.87 -4.06 -26.53 16 13 C 0.04 1.59 6.38 86.77 0.55 2.15 16 14 C -0.11 -3.37 6.35 31.98 0.20 -3.17 16 15 C -0.06 -2.13 2.90 -10.36 -0.03 -2.16 16 16 H 0.06 2.20 7.81 -2.39 -0.02 2.18 16 17 C -0.07 -1.83 3.64 -19.87 -0.07 -1.90 16 18 C -0.12 -2.85 6.96 22.27 0.16 -2.69 16 19 C -0.12 -2.43 10.05 22.27 0.22 -2.21 16 20 C -0.13 -2.49 10.05 22.27 0.22 -2.26 16 21 C -0.12 -2.65 10.05 22.27 0.22 -2.43 16 22 C -0.14 -3.68 9.69 22.27 0.22 -3.47 16 23 C 0.09 3.35 1.79 45.26 0.08 3.43 16 24 H 0.04 1.87 5.56 -2.39 -0.01 1.86 16 25 C -0.12 -3.90 8.10 71.98 0.58 -3.32 16 26 H 0.03 1.49 6.61 -2.39 -0.02 1.47 16 27 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.04 2.25 6.86 -2.39 -0.02 2.23 16 29 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 30 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.03 1.55 6.40 -2.39 -0.02 1.53 16 32 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.09 2.43 5.80 -2.39 -0.01 2.42 16 34 H 0.13 2.96 5.31 -2.91 -0.02 2.94 16 35 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 36 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 38 H 0.11 3.00 8.06 -2.91 -0.02 2.98 16 39 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.05 1.63 7.25 -2.38 -0.02 1.61 16 41 H 0.07 2.02 5.84 -2.39 -0.01 2.00 16 Total: -1.00 -60.40 311.15 2.92 -57.48 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 1.00 Total: 15.91 kcal Atomic # 6 Polarization: -43.46 SS G_CDS: 3.69 Total: -39.77 kcal Atomic # 7 Polarization: -75.72 SS G_CDS: -3.80 Total: -79.53 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -60.40 2.92 -57.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246550049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.182 kcal (2) G-P(sol) polarization free energy of solvation -60.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds