Wall clock time and date at job start Mon Mar 30 2020 06:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50701 * 109.46703 * 240.00208 * 2 1 3 5 5 H 1.07998 * 119.99960 * 239.99316 * 4 2 1 6 6 C 1.37878 * 119.99814 * 60.00192 * 4 2 1 7 7 N 1.31511 * 120.00291 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99533 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47073 * 90.00276 * 8 6 4 10 10 H 1.48506 * 109.46955 * 210.00046 * 8 6 4 11 11 H 1.48499 * 109.47265 * 329.99540 * 8 6 4 12 12 N 1.46900 * 109.47212 * 120.00594 * 2 1 3 13 13 C 1.48536 * 110.99402 * 303.45705 * 12 2 1 14 14 C 1.54940 * 103.22435 * 200.27910 * 13 12 2 15 15 C 1.54603 * 102.92106 * 37.41931 * 14 13 12 16 16 H 1.08995 * 110.30976 * 96.95312 * 15 14 13 17 17 C 1.50702 * 110.39265 * 219.08488 * 15 14 13 18 18 C 1.38236 * 120.00007 * 55.48567 * 17 15 14 19 19 C 1.38240 * 119.99817 * 179.77065 * 18 17 15 20 20 C 1.38234 * 120.00100 * 0.50361 * 19 18 17 21 21 C 1.38242 * 119.99774 * 359.75427 * 20 19 18 22 22 C 1.38235 * 119.99838 * 235.76397 * 17 15 14 23 23 C 1.47894 * 110.99949 * 186.06593 * 12 2 1 24 24 H 1.09000 * 110.08154 * 265.28794 * 23 12 2 25 25 C 1.53001 * 109.92117 * 26.48792 * 23 12 2 26 26 H 1.09001 * 109.46721 * 304.87037 * 1 2 3 27 27 H 1.08998 * 109.47138 * 64.86881 * 1 2 3 28 28 H 1.08998 * 109.47192 * 184.87277 * 1 2 3 29 29 H 0.97000 * 120.00010 * 180.02562 * 7 6 4 30 30 H 1.09003 * 110.66953 * 81.84984 * 13 12 2 31 31 H 1.08999 * 110.81397 * 318.77941 * 13 12 2 32 32 H 1.09002 * 110.72574 * 279.05944 * 14 13 12 33 33 H 1.08996 * 110.87967 * 155.84243 * 14 13 12 34 34 H 1.08000 * 120.00469 * 0.02562 * 18 17 15 35 35 H 1.07994 * 119.99730 * 180.23713 * 19 18 17 36 36 H 1.07997 * 120.00227 * 179.72587 * 20 19 18 37 37 H 1.07993 * 119.99986 * 179.97438 * 21 20 19 38 38 H 1.07999 * 119.99849 * 359.97438 * 22 17 15 39 39 H 1.09003 * 109.47865 * 171.60685 * 25 23 12 40 40 H 1.09010 * 109.46912 * 291.60449 * 25 23 12 41 41 H 1.09001 * 109.47218 * 51.59929 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0080 9 1 1.3445 -2.1613 -4.4125 10 1 2.4871 -0.1400 -5.1121 11 1 3.6307 -1.7564 -3.7121 12 7 2.0197 -0.6926 1.1994 13 6 1.4763 -0.0691 2.4331 14 6 2.4616 -0.5404 3.5320 15 6 3.8278 -0.5063 2.8091 16 1 4.3495 0.4248 3.0300 17 6 4.6693 -1.6869 3.2207 18 6 4.1773 -2.9705 3.0752 19 6 4.9511 -4.0536 3.4482 20 6 6.2126 -3.8526 3.9765 21 6 6.7024 -2.5687 4.1269 22 6 5.9308 -1.4858 3.7490 23 6 3.4908 -0.5873 1.3087 24 1 3.9627 -1.4660 0.8690 25 6 3.9774 0.6764 0.5965 26 1 -0.3633 0.5876 0.8432 27 1 -0.3633 0.4364 -0.9304 28 1 -0.3633 -1.0239 0.0873 29 1 0.7080 1.1610 -3.4843 30 1 0.4695 -0.4336 2.6372 31 1 1.4815 1.0179 2.3523 32 1 2.2220 -1.5531 3.8564 33 1 2.4562 0.1458 4.3789 34 1 3.1902 -3.1275 2.6662 35 1 4.5683 -5.0566 3.3310 36 1 6.8154 -4.6986 4.2721 37 1 7.6878 -2.4116 4.5400 38 1 6.3134 -0.4827 3.8664 39 1 5.0364 0.8270 0.8062 40 1 3.8319 0.5666 -0.4783 41 1 3.4104 1.5361 0.9538 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246550059.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:22 Heat of formation + Delta-G solvation = 26.571595 kcal Electronic energy + Delta-G solvation = -19897.975897 eV Core-core repulsion = 17163.336551 eV Total energy + Delta-G solvation = -2734.639346 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.78589 -38.06411 -34.14509 -32.04560 -30.77303 -30.50201 -29.85284 -27.09951 -25.15086 -24.96154 -22.56539 -21.70651 -21.52941 -19.52456 -18.44935 -16.83888 -16.01835 -15.44503 -15.28121 -14.66919 -14.56830 -13.99181 -13.49099 -13.19249 -12.95211 -12.70332 -12.45757 -12.13545 -12.03871 -11.66492 -11.44270 -11.11124 -11.00633 -10.92742 -10.75564 -10.62415 -10.58238 -10.22392 -10.18123 -9.95755 -9.79149 -9.72255 -8.87108 -8.73202 -8.42278 -8.36485 -7.15766 -5.98244 -4.01362 1.54638 1.58671 3.32199 3.38804 3.42507 3.96257 4.43362 4.89318 4.93631 5.09525 5.14625 5.26778 5.31733 5.35520 5.44498 5.61821 5.71503 5.77292 5.90383 6.01864 6.12995 6.17742 6.19406 6.28529 6.32054 6.47929 6.52780 6.56771 6.64587 6.69717 6.84807 6.90595 6.93046 7.10255 7.15431 7.19602 7.25641 7.54483 7.71099 7.86777 8.23277 8.36833 8.61145 9.05113 9.62374 11.07964 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.023164 B = 0.006017 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.501449 B = 4652.239305 C = 5237.299297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.198 3.802 3 H 0.013 0.987 4 C -0.492 4.492 5 H 0.060 0.940 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.892 3.108 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.506 5.506 13 C 0.035 3.965 14 C -0.114 4.114 15 C -0.064 4.064 16 H 0.075 0.925 17 C -0.058 4.058 18 C -0.105 4.105 19 C -0.121 4.121 20 C -0.133 4.133 21 C -0.125 4.125 22 C -0.122 4.122 23 C 0.091 3.909 24 H 0.078 0.922 25 C -0.172 4.172 26 H 0.005 0.995 27 H 0.086 0.914 28 H 0.031 0.969 29 H 0.259 0.741 30 H 0.072 0.928 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.131 0.869 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.036 0.964 40 H 0.092 0.908 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.225 -3.915 12.540 14.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.092 3.908 3 H 0.030 0.970 4 C -0.531 4.531 5 H 0.078 0.922 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.230 5.230 13 C -0.093 4.093 14 C -0.152 4.152 15 C -0.083 4.083 16 H 0.094 0.906 17 C -0.059 4.059 18 C -0.123 4.123 19 C -0.139 4.139 20 C -0.151 4.151 21 C -0.143 4.143 22 C -0.140 4.140 23 C -0.018 4.018 24 H 0.096 0.904 25 C -0.230 4.230 26 H 0.024 0.976 27 H 0.105 0.895 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.149 0.851 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.055 0.945 40 H 0.111 0.889 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.969 -4.335 12.321 14.805 hybrid contribution 0.569 0.457 -0.873 1.138 sum 7.538 -3.879 11.448 14.245 Atomic orbital electron populations 1.21851 0.98054 0.98769 1.00702 1.19521 0.92021 0.92957 0.86345 0.96958 1.21063 1.30357 1.12017 0.89633 0.92203 1.24911 0.95381 0.95114 0.98891 1.69882 1.37093 1.23078 1.23285 0.86591 0.79291 0.79366 0.82738 1.20737 1.21415 1.19937 1.65083 1.03413 1.52342 1.02191 1.23118 0.98234 0.96759 0.91220 1.22608 0.93842 1.01546 0.97225 1.21266 0.95149 0.95195 0.96701 0.90618 1.19902 0.94265 0.94770 0.96931 1.21192 1.00540 0.91834 0.98756 1.21145 0.94645 0.98824 0.99314 1.21061 0.96280 0.96816 1.00963 1.21044 0.99503 0.92841 1.00874 1.21060 0.94338 0.98716 0.99933 1.22198 0.90604 0.97921 0.91086 0.90401 1.22434 0.98366 0.97567 1.04662 0.97564 0.89497 0.94989 0.93074 0.90995 0.94859 0.90970 0.92060 0.85113 0.86392 0.86705 0.86638 0.86525 0.94528 0.88919 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.66 37.16 0.32 -2.99 16 2 C 0.20 4.87 1.42 -68.86 -0.10 4.77 16 3 H 0.01 0.34 5.82 -51.93 -0.30 0.04 16 4 C -0.49 -13.20 6.56 -34.44 -0.23 -13.43 16 5 H 0.06 1.64 7.65 -52.49 -0.40 1.24 16 6 C 0.06 1.57 5.29 -17.82 -0.09 1.48 16 7 N -0.89 -25.18 11.29 55.43 0.63 -24.55 16 8 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.51 -10.68 5.09 -216.05 -1.10 -11.78 16 13 C 0.04 0.63 5.27 -1.89 -0.01 0.62 16 14 C -0.11 -1.73 6.49 -24.86 -0.16 -1.89 16 15 C -0.06 -1.01 2.85 -90.41 -0.26 -1.26 16 16 H 0.08 1.13 7.47 -51.93 -0.39 0.74 16 17 C -0.06 -0.87 4.72 -104.62 -0.49 -1.36 16 18 C -0.11 -1.55 8.20 -39.58 -0.32 -1.88 16 19 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 20 C -0.13 -1.59 10.05 -39.58 -0.40 -1.98 16 21 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 22 C -0.12 -1.62 9.68 -39.58 -0.38 -2.00 16 23 C 0.09 1.74 2.59 -66.65 -0.17 1.57 16 24 H 0.08 1.62 7.35 -51.93 -0.38 1.24 16 25 C -0.17 -3.41 7.56 37.16 0.28 -3.13 16 26 H 0.01 0.12 7.14 -51.93 -0.37 -0.25 16 27 H 0.09 2.33 5.95 -51.93 -0.31 2.02 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.07 1.27 7.76 -51.93 -0.40 0.87 16 31 H 0.03 0.62 8.02 -51.93 -0.42 0.20 16 32 H 0.07 1.07 6.83 -51.93 -0.35 0.71 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.13 2.04 7.67 -52.49 -0.40 1.64 16 35 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.36 7.97 -52.49 -0.42 0.94 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.09 2.14 5.90 -51.92 -0.31 1.83 16 41 H 0.04 0.89 7.25 -51.93 -0.38 0.51 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -27.88 316.38 -10.04 -37.92 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.50 Total: 2.68 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -2.81 Total: -25.33 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: -0.47 Total: -36.33 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.88 -10.04 -37.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246550059.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.489 kcal (2) G-P(sol) polarization free energy of solvation -27.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds