Wall clock time and date at job start Mon Mar 30 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50701 * 109.46703 * 240.00208 * 2 1 3 5 5 H 1.07998 * 119.99960 * 239.99316 * 4 2 1 6 6 C 1.37878 * 119.99814 * 60.00192 * 4 2 1 7 7 N 1.31511 * 120.00291 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99533 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47073 * 90.00276 * 8 6 4 10 10 H 1.48506 * 109.46955 * 210.00046 * 8 6 4 11 11 H 1.48499 * 109.47265 * 329.99540 * 8 6 4 12 12 N 1.46900 * 109.47212 * 120.00594 * 2 1 3 13 13 C 1.48536 * 110.99402 * 303.45705 * 12 2 1 14 14 C 1.54940 * 103.22435 * 200.27910 * 13 12 2 15 15 C 1.54603 * 102.92106 * 37.41931 * 14 13 12 16 16 H 1.08995 * 110.30976 * 96.95312 * 15 14 13 17 17 C 1.50702 * 110.39265 * 219.08488 * 15 14 13 18 18 C 1.38236 * 120.00007 * 55.48567 * 17 15 14 19 19 C 1.38240 * 119.99817 * 179.77065 * 18 17 15 20 20 C 1.38234 * 120.00100 * 0.50361 * 19 18 17 21 21 C 1.38242 * 119.99774 * 359.75427 * 20 19 18 22 22 C 1.38235 * 119.99838 * 235.76397 * 17 15 14 23 23 C 1.47894 * 110.99949 * 186.06593 * 12 2 1 24 24 H 1.09000 * 110.08154 * 265.28794 * 23 12 2 25 25 C 1.53001 * 109.92117 * 26.48792 * 23 12 2 26 26 H 1.09001 * 109.46721 * 304.87037 * 1 2 3 27 27 H 1.08998 * 109.47138 * 64.86881 * 1 2 3 28 28 H 1.08998 * 109.47192 * 184.87277 * 1 2 3 29 29 H 0.97000 * 120.00010 * 180.02562 * 7 6 4 30 30 H 1.09003 * 110.66953 * 81.84984 * 13 12 2 31 31 H 1.08999 * 110.81397 * 318.77941 * 13 12 2 32 32 H 1.09002 * 110.72574 * 279.05944 * 14 13 12 33 33 H 1.08996 * 110.87967 * 155.84243 * 14 13 12 34 34 H 1.08000 * 120.00469 * 0.02562 * 18 17 15 35 35 H 1.07994 * 119.99730 * 180.23713 * 19 18 17 36 36 H 1.07997 * 120.00227 * 179.72587 * 20 19 18 37 37 H 1.07993 * 119.99986 * 179.97438 * 21 20 19 38 38 H 1.07999 * 119.99849 * 359.97438 * 22 17 15 39 39 H 1.09003 * 109.47865 * 171.60685 * 25 23 12 40 40 H 1.09010 * 109.46912 * 291.60449 * 25 23 12 41 41 H 1.09001 * 109.47218 * 51.59929 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0080 9 1 1.3445 -2.1613 -4.4125 10 1 2.4871 -0.1400 -5.1121 11 1 3.6307 -1.7564 -3.7121 12 7 2.0197 -0.6926 1.1994 13 6 1.4763 -0.0691 2.4331 14 6 2.4616 -0.5404 3.5320 15 6 3.8278 -0.5063 2.8091 16 1 4.3495 0.4248 3.0300 17 6 4.6693 -1.6869 3.2207 18 6 4.1773 -2.9705 3.0752 19 6 4.9511 -4.0536 3.4482 20 6 6.2126 -3.8526 3.9765 21 6 6.7024 -2.5687 4.1269 22 6 5.9308 -1.4858 3.7490 23 6 3.4908 -0.5873 1.3087 24 1 3.9627 -1.4660 0.8690 25 6 3.9774 0.6764 0.5965 26 1 -0.3633 0.5876 0.8432 27 1 -0.3633 0.4364 -0.9304 28 1 -0.3633 -1.0239 0.0873 29 1 0.7080 1.1610 -3.4843 30 1 0.4695 -0.4336 2.6372 31 1 1.4815 1.0179 2.3523 32 1 2.2220 -1.5531 3.8564 33 1 2.4562 0.1458 4.3789 34 1 3.1902 -3.1275 2.6662 35 1 4.5683 -5.0566 3.3310 36 1 6.8154 -4.6986 4.2721 37 1 7.6878 -2.4116 4.5400 38 1 6.3134 -0.4827 3.8664 39 1 5.0364 0.8270 0.8062 40 1 3.8319 0.5666 -0.4783 41 1 3.4104 1.5361 0.9538 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246550059.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:21 Heat of formation + Delta-G solvation = 11.987535 kcal Electronic energy + Delta-G solvation = -19898.608309 eV Core-core repulsion = 17163.336551 eV Total energy + Delta-G solvation = -2735.271758 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.07930 -39.33699 -35.89287 -33.71241 -32.10522 -31.68092 -31.35872 -28.68621 -27.17451 -26.42719 -23.63369 -23.27293 -22.79719 -20.83368 -20.17422 -18.19675 -17.77594 -17.06914 -16.54507 -16.20860 -15.87572 -15.40535 -14.87250 -14.74303 -14.16010 -14.03072 -13.81922 -13.74081 -13.47674 -13.27167 -13.07085 -12.83041 -12.69007 -12.41538 -12.36926 -12.20153 -12.05904 -11.94101 -11.62351 -11.55858 -11.40499 -11.34689 -10.85960 -10.47960 -9.71757 -9.45734 -8.88833 -8.08070 -6.16929 0.54375 0.59913 1.39989 1.41447 1.50862 2.42993 2.95221 3.19445 3.46207 3.74756 3.88737 3.99332 4.18360 4.25379 4.36741 4.44517 4.45706 4.58742 4.61833 4.72448 4.77988 4.81560 4.85719 4.86867 5.03339 5.07419 5.08468 5.12538 5.23461 5.26850 5.32024 5.41872 5.48400 5.59371 5.68403 5.71802 5.76867 5.80796 5.89062 6.22648 6.32682 6.45414 6.73399 6.95918 7.50123 8.97168 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.023164 B = 0.006017 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.501449 B = 4652.239305 C = 5237.299297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.206 3.794 3 H -0.012 1.012 4 C -0.499 4.499 5 H 0.047 0.953 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.949 3.051 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.518 5.518 13 C 0.033 3.967 14 C -0.103 4.103 15 C -0.053 4.053 16 H 0.088 0.912 17 C -0.076 4.076 18 C -0.124 4.124 19 C -0.129 4.129 20 C -0.132 4.132 21 C -0.124 4.124 22 C -0.128 4.128 23 C 0.092 3.908 24 H 0.056 0.944 25 C -0.162 4.162 26 H 0.025 0.975 27 H 0.061 0.939 28 H 0.027 0.973 29 H 0.260 0.740 30 H 0.074 0.926 31 H 0.028 0.972 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.133 0.867 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.133 0.867 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.939 -4.675 14.236 17.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.099 3.901 3 H 0.005 0.995 4 C -0.538 4.538 5 H 0.065 0.935 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.775 3.225 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.243 5.243 13 C -0.095 4.095 14 C -0.141 4.141 15 C -0.072 4.072 16 H 0.107 0.893 17 C -0.076 4.076 18 C -0.142 4.142 19 C -0.147 4.147 20 C -0.149 4.149 21 C -0.142 4.142 22 C -0.146 4.146 23 C -0.016 4.016 24 H 0.074 0.926 25 C -0.220 4.220 26 H 0.044 0.956 27 H 0.080 0.920 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.130 0.870 35 H 0.150 0.850 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.151 0.849 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.685 -5.103 14.031 17.272 hybrid contribution 0.076 0.659 -1.356 1.509 sum 8.760 -4.444 12.675 16.036 Atomic orbital electron populations 1.21692 0.98039 0.98509 1.00159 1.19265 0.91938 0.91568 0.87378 0.99497 1.21223 1.30032 1.11572 0.90949 0.93517 1.25581 0.95654 0.95798 1.01451 1.69994 1.38001 1.24156 1.23780 0.85691 0.78772 0.78390 0.79602 1.20358 1.20920 1.19701 1.64942 1.04924 1.52269 1.02154 1.23180 0.99211 0.96309 0.90833 1.22562 0.92341 1.02304 0.96847 1.21125 0.95866 0.96511 0.93703 0.89330 1.19846 0.95129 0.94135 0.98492 1.21155 1.00314 0.92780 0.99960 1.21381 0.95164 0.99034 0.99152 1.21436 0.95864 0.97959 0.99689 1.21422 1.00481 0.92418 0.99893 1.21295 0.93678 1.00124 0.99523 1.22145 0.89215 0.96480 0.93803 0.92561 1.22279 0.99959 0.97710 1.02063 0.95575 0.92033 0.95376 0.93088 0.90743 0.95392 0.90674 0.89304 0.87034 0.84952 0.83930 0.83787 0.84936 0.91965 0.92795 0.94280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 8.66 71.98 0.62 -5.64 16 2 C 0.21 10.42 1.42 44.17 0.06 10.49 16 3 H -0.01 -0.68 5.82 -2.39 -0.01 -0.70 16 4 C -0.50 -27.62 6.56 25.60 0.17 -27.45 16 5 H 0.05 2.65 7.65 -2.91 -0.02 2.63 16 6 C 0.01 0.74 5.29 84.66 0.45 1.19 16 7 N -0.92 -53.03 11.29 21.45 0.24 -52.79 16 8 Si 0.95 44.46 29.54 68.60 2.03 46.48 16 9 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 N -0.52 -22.25 5.09 -837.43 -4.26 -26.51 16 13 C 0.03 1.16 5.27 86.65 0.46 1.62 16 14 C -0.10 -2.93 6.49 31.80 0.21 -2.72 16 15 C -0.05 -1.59 2.85 -10.66 -0.03 -1.63 16 16 H 0.09 2.43 7.47 -2.39 -0.02 2.41 16 17 C -0.08 -2.13 4.72 -19.87 -0.09 -2.22 16 18 C -0.12 -3.57 8.20 22.27 0.18 -3.38 16 19 C -0.13 -3.12 10.05 22.27 0.22 -2.89 16 20 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 21 C -0.12 -2.54 10.05 22.27 0.22 -2.31 16 22 C -0.13 -3.04 9.68 22.27 0.22 -2.82 16 23 C 0.09 3.57 2.59 45.06 0.12 3.69 16 24 H 0.06 2.41 7.35 -2.39 -0.02 2.39 16 25 C -0.16 -6.50 7.56 71.98 0.54 -5.96 16 26 H 0.03 1.14 7.14 -2.39 -0.02 1.13 16 27 H 0.06 3.39 5.95 -2.39 -0.01 3.37 16 28 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 30 H 0.07 2.58 7.76 -2.39 -0.02 2.56 16 31 H 0.03 1.02 8.02 -2.39 -0.02 1.00 16 32 H 0.07 2.12 6.83 -2.39 -0.02 2.10 16 33 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.11 3.55 7.67 -2.91 -0.02 3.53 16 35 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.13 2.64 7.97 -2.91 -0.02 2.62 16 39 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.05 2.57 5.90 -2.38 -0.01 2.56 16 41 H 0.04 1.57 7.25 -2.39 -0.02 1.56 16 Total: -1.00 -61.08 316.38 2.57 -58.51 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.99 Total: 16.82 kcal Atomic # 6 Polarization: -46.09 SS G_CDS: 3.57 Total: -42.52 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -4.02 Total: -79.30 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -61.08 2.57 -58.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246550059.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.501 kcal (2) G-P(sol) polarization free energy of solvation -61.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds