Wall clock time and date at job start Mon Mar 30 2020 06:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47312 * 2 1 4 4 C 1.50703 * 109.47610 * 239.99723 * 2 1 3 5 5 H 1.07997 * 119.99898 * 240.00414 * 4 2 1 6 6 C 1.37879 * 119.99481 * 59.99651 * 4 2 1 7 7 N 1.31508 * 120.00282 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99625 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47319 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47221 * 120.00223 * 8 6 4 11 11 H 1.48499 * 109.47031 * 240.00483 * 8 6 4 12 12 N 1.46901 * 109.47193 * 119.99823 * 2 1 3 13 13 C 1.47442 * 111.00087 * 66.60168 * 12 2 1 14 14 C 1.54322 * 107.22961 * 123.25895 * 13 12 2 15 15 H 1.08997 * 110.70939 * 263.72559 * 14 13 12 16 16 C 1.50706 * 110.70329 * 140.66900 * 14 13 12 17 17 C 1.38237 * 119.99778 * 301.18068 * 16 14 13 18 18 C 1.38233 * 119.99400 * 179.81517 * 17 16 14 19 19 C 1.38237 * 120.00463 * 0.41266 * 18 17 16 20 20 C 1.38239 * 119.99428 * 359.81877 * 19 18 17 21 21 C 1.38228 * 120.00138 * 359.97438 * 20 19 18 22 22 C 1.55264 * 103.08507 * 22.20830 * 14 13 12 23 23 C 1.47846 * 111.00064 * 187.45101 * 12 2 1 24 24 H 1.08997 * 110.37339 * 332.57505 * 23 12 2 25 25 C 1.52998 * 110.37262 * 94.80496 * 23 12 2 26 26 H 1.09001 * 109.47294 * 183.48174 * 1 2 3 27 27 H 1.08998 * 109.47185 * 303.48398 * 1 2 3 28 28 H 1.08998 * 109.47154 * 63.48576 * 1 2 3 29 29 H 0.97006 * 120.00018 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.89265 * 242.66275 * 13 12 2 31 31 H 1.08996 * 109.88944 * 3.86018 * 13 12 2 32 32 H 1.07994 * 119.99887 * 359.97438 * 17 16 14 33 33 H 1.08003 * 119.99731 * 180.20874 * 18 17 16 34 34 H 1.07995 * 120.00128 * 179.79477 * 19 18 17 35 35 H 1.08001 * 119.99550 * 179.97438 * 20 19 18 36 36 H 1.07999 * 119.99803 * 179.97438 * 21 20 19 37 37 H 1.09005 * 111.08135 * 206.38217 * 22 14 13 38 38 H 1.09002 * 110.94397 * 82.52876 * 22 14 13 39 39 H 1.08998 * 109.47285 * 55.80000 * 25 23 12 40 40 H 1.08995 * 109.47497 * 295.79237 * 25 23 12 41 41 H 1.08999 * 109.46899 * 175.79274 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 3.1457 -2.2877 -3.6036 10 1 1.1662 -1.5869 -4.8160 11 1 3.1468 -0.1875 -4.8163 12 7 2.0197 -0.6925 1.1995 13 6 1.6804 -2.1267 1.1571 14 6 3.0018 -2.9130 1.2886 15 1 3.3788 -3.2000 0.3070 16 6 2.8145 -4.1274 2.1612 17 6 2.3800 -3.9810 3.4653 18 6 2.2046 -5.0953 4.2644 19 6 2.4719 -6.3551 3.7622 20 6 2.9109 -6.5010 2.4595 21 6 3.0822 -5.3872 1.6591 22 6 3.9534 -1.8904 1.9663 23 6 3.4866 -0.5591 1.3265 24 1 3.9423 -0.4295 0.3448 25 6 3.8375 0.6205 2.2354 26 1 -0.3634 -1.0258 0.0624 27 1 -0.3633 0.5670 0.8571 28 1 -0.3633 0.4588 -0.9196 29 1 0.7095 1.1616 -3.4845 30 1 1.0170 -2.3755 1.9853 31 1 1.1994 -2.3661 0.2088 32 1 2.1752 -2.9965 3.8589 33 1 1.8620 -4.9812 5.2823 34 1 2.3380 -7.2253 4.3876 35 1 3.1201 -7.4853 2.0673 36 1 3.4257 -5.5011 0.6415 37 1 4.9941 -2.0991 1.7181 38 1 3.8061 -1.8774 3.0462 39 1 3.3472 0.4940 3.2006 40 1 3.4981 1.5480 1.7743 41 1 4.9173 0.6600 2.3789 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246874392.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:10 Heat of formation + Delta-G solvation = 18.622079 kcal Electronic energy + Delta-G solvation = -19828.558228 eV Core-core repulsion = 17093.574166 eV Total energy + Delta-G solvation = -2734.984063 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.63764 -37.99153 -34.00182 -32.28377 -31.09357 -30.74830 -28.96636 -27.17747 -25.21794 -24.88767 -22.88988 -22.24878 -20.42871 -19.63383 -18.81330 -16.73795 -16.19197 -15.75162 -15.00921 -14.70267 -14.31323 -13.81931 -13.28785 -13.09616 -13.07748 -12.85286 -12.61951 -12.34444 -11.84678 -11.67426 -11.42763 -11.16797 -11.02113 -10.93406 -10.76216 -10.64989 -10.52652 -10.14320 -10.06720 -9.99819 -9.94854 -9.68367 -9.07810 -8.76287 -8.41471 -8.37251 -7.14521 -5.99090 -4.11151 1.53181 1.55420 3.24803 3.33730 3.36089 3.94218 4.39077 4.92448 4.98157 5.08874 5.13028 5.25873 5.27807 5.38549 5.53815 5.61241 5.70120 5.78251 5.99280 6.08181 6.13782 6.19874 6.21062 6.32269 6.39207 6.47785 6.59993 6.64090 6.72781 6.78013 6.80967 6.93340 6.96124 7.04852 7.11894 7.17834 7.27079 7.59082 7.72872 8.01763 8.18483 8.33319 8.47166 8.99720 9.55883 11.01116 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.020790 B = 0.006294 C = 0.005529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.481841 B = 4447.900513 C = 5063.029266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.201 3.799 3 H 0.037 0.963 4 C -0.538 4.538 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.525 5.525 13 C 0.063 3.937 14 C -0.074 4.074 15 H 0.080 0.920 16 C -0.055 4.055 17 C -0.112 4.112 18 C -0.121 4.121 19 C -0.135 4.135 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.113 4.113 23 C 0.069 3.931 24 H 0.066 0.934 25 C -0.129 4.129 26 H 0.024 0.976 27 H 0.013 0.987 28 H 0.084 0.916 29 H 0.260 0.740 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.125 0.875 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.207 -9.308 10.464 14.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.094 3.906 3 H 0.055 0.945 4 C -0.577 4.577 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.713 3.287 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.249 5.249 13 C -0.066 4.066 14 C -0.094 4.094 15 H 0.098 0.902 16 C -0.055 4.055 17 C -0.130 4.130 18 C -0.139 4.139 19 C -0.153 4.153 20 C -0.140 4.140 21 C -0.139 4.139 22 C -0.151 4.151 23 C -0.039 4.039 24 H 0.084 0.916 25 C -0.187 4.187 26 H 0.043 0.957 27 H 0.032 0.968 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.143 0.857 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.864 -8.927 10.742 14.491 hybrid contribution 0.656 -0.905 -1.767 2.091 sum 4.520 -9.832 8.974 14.058 Atomic orbital electron populations 1.21771 0.97829 0.98590 1.00587 1.19424 0.92325 0.94276 0.84545 0.94486 1.21799 1.31514 1.12782 0.91602 0.92442 1.24919 0.94915 0.94849 0.98842 1.69890 1.36511 1.22758 1.23267 0.86657 0.78713 0.79783 0.83567 1.19941 1.21020 1.21036 1.63871 1.10194 1.09630 1.41209 1.22728 0.94339 0.88106 1.01389 1.21518 0.98204 0.92258 0.97386 0.90181 1.19942 0.96798 0.94480 0.94317 1.21079 0.99342 0.98877 0.93704 1.21108 1.00482 0.92726 0.99627 1.21050 1.01184 0.97175 0.95871 1.21074 1.00232 0.98331 0.94346 1.21118 1.00774 0.92207 0.99805 1.22848 0.97864 0.94604 0.99742 1.22422 0.90045 0.93281 0.98179 0.91562 1.21644 0.99081 0.98449 0.99505 0.95707 0.96807 0.89791 0.92996 0.92669 0.90937 0.85741 0.86469 0.86682 0.86563 0.86322 0.92033 0.91296 0.92961 0.92825 0.93679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.04 37.16 0.34 -2.84 16 2 C 0.20 4.97 2.28 -68.86 -0.16 4.81 16 3 H 0.04 1.01 8.11 -51.93 -0.42 0.59 16 4 C -0.54 -14.13 6.18 -34.44 -0.21 -14.34 16 5 H 0.06 1.51 6.27 -52.49 -0.33 1.18 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.89 -24.86 11.30 55.43 0.63 -24.24 16 8 Si 0.88 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.53 -11.09 4.80 -216.86 -1.04 -12.13 16 13 C 0.06 1.23 4.84 -2.83 -0.01 1.22 16 14 C -0.07 -1.27 2.93 -89.88 -0.26 -1.53 16 15 H 0.08 1.45 7.57 -51.93 -0.39 1.06 16 16 C -0.05 -0.83 4.92 -104.62 -0.52 -1.35 16 17 C -0.11 -1.57 8.13 -39.58 -0.32 -1.90 16 18 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 19 C -0.13 -1.58 10.05 -39.58 -0.40 -1.97 16 20 C -0.12 -1.50 10.05 -39.58 -0.40 -1.89 16 21 C -0.12 -1.70 9.68 -39.59 -0.38 -2.08 16 22 C -0.11 -1.82 5.89 -24.53 -0.14 -1.97 16 23 C 0.07 1.32 2.75 -66.19 -0.18 1.13 16 24 H 0.07 1.43 6.88 -51.93 -0.36 1.07 16 25 C -0.13 -2.15 9.59 37.16 0.36 -1.79 16 26 H 0.02 0.58 6.84 -51.93 -0.36 0.22 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 2.24 5.99 -51.93 -0.31 1.93 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.06 1.05 7.02 -51.93 -0.36 0.68 16 31 H 0.07 1.62 5.67 -51.93 -0.29 1.32 16 32 H 0.12 1.73 7.30 -52.49 -0.38 1.35 16 33 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.12 1.57 7.98 -52.49 -0.42 1.15 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.05 6.76 -51.93 -0.35 0.70 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 318.21 15.07 4.80 4.80 Total: -1.00 -27.53 318.21 -9.93 -37.46 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.50 Total: 2.83 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: -2.79 Total: -24.67 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: -0.42 Total: -36.37 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.53 -9.93 -37.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246874392.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.078 kcal (2) G-P(sol) polarization free energy of solvation -27.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds