Wall clock time and date at job start Mon Mar 30 2020 06:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47312 * 2 1 4 4 C 1.50703 * 109.47610 * 239.99723 * 2 1 3 5 5 H 1.07997 * 119.99898 * 240.00414 * 4 2 1 6 6 C 1.37879 * 119.99481 * 59.99651 * 4 2 1 7 7 N 1.31508 * 120.00282 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99625 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47319 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47221 * 120.00223 * 8 6 4 11 11 H 1.48499 * 109.47031 * 240.00483 * 8 6 4 12 12 N 1.46901 * 109.47193 * 119.99823 * 2 1 3 13 13 C 1.47442 * 111.00087 * 66.60168 * 12 2 1 14 14 C 1.54322 * 107.22961 * 123.25895 * 13 12 2 15 15 H 1.08997 * 110.70939 * 263.72559 * 14 13 12 16 16 C 1.50706 * 110.70329 * 140.66900 * 14 13 12 17 17 C 1.38237 * 119.99778 * 301.18068 * 16 14 13 18 18 C 1.38233 * 119.99400 * 179.81517 * 17 16 14 19 19 C 1.38237 * 120.00463 * 0.41266 * 18 17 16 20 20 C 1.38239 * 119.99428 * 359.81877 * 19 18 17 21 21 C 1.38228 * 120.00138 * 359.97438 * 20 19 18 22 22 C 1.55264 * 103.08507 * 22.20830 * 14 13 12 23 23 C 1.47846 * 111.00064 * 187.45101 * 12 2 1 24 24 H 1.08997 * 110.37339 * 332.57505 * 23 12 2 25 25 C 1.52998 * 110.37262 * 94.80496 * 23 12 2 26 26 H 1.09001 * 109.47294 * 183.48174 * 1 2 3 27 27 H 1.08998 * 109.47185 * 303.48398 * 1 2 3 28 28 H 1.08998 * 109.47154 * 63.48576 * 1 2 3 29 29 H 0.97006 * 120.00018 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.89265 * 242.66275 * 13 12 2 31 31 H 1.08996 * 109.88944 * 3.86018 * 13 12 2 32 32 H 1.07994 * 119.99887 * 359.97438 * 17 16 14 33 33 H 1.08003 * 119.99731 * 180.20874 * 18 17 16 34 34 H 1.07995 * 120.00128 * 179.79477 * 19 18 17 35 35 H 1.08001 * 119.99550 * 179.97438 * 20 19 18 36 36 H 1.07999 * 119.99803 * 179.97438 * 21 20 19 37 37 H 1.09005 * 111.08135 * 206.38217 * 22 14 13 38 38 H 1.09002 * 110.94397 * 82.52876 * 22 14 13 39 39 H 1.08998 * 109.47285 * 55.80000 * 25 23 12 40 40 H 1.08995 * 109.47497 * 295.79237 * 25 23 12 41 41 H 1.08999 * 109.46899 * 175.79274 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 3.1457 -2.2877 -3.6036 10 1 1.1662 -1.5869 -4.8160 11 1 3.1468 -0.1875 -4.8163 12 7 2.0197 -0.6925 1.1995 13 6 1.6804 -2.1267 1.1571 14 6 3.0018 -2.9130 1.2886 15 1 3.3788 -3.2000 0.3070 16 6 2.8145 -4.1274 2.1612 17 6 2.3800 -3.9810 3.4653 18 6 2.2046 -5.0953 4.2644 19 6 2.4719 -6.3551 3.7622 20 6 2.9109 -6.5010 2.4595 21 6 3.0822 -5.3872 1.6591 22 6 3.9534 -1.8904 1.9663 23 6 3.4866 -0.5591 1.3265 24 1 3.9423 -0.4295 0.3448 25 6 3.8375 0.6205 2.2354 26 1 -0.3634 -1.0258 0.0624 27 1 -0.3633 0.5670 0.8571 28 1 -0.3633 0.4588 -0.9196 29 1 0.7095 1.1616 -3.4845 30 1 1.0170 -2.3755 1.9853 31 1 1.1994 -2.3661 0.2088 32 1 2.1752 -2.9965 3.8589 33 1 1.8620 -4.9812 5.2823 34 1 2.3380 -7.2253 4.3876 35 1 3.1201 -7.4853 2.0673 36 1 3.4257 -5.5011 0.6415 37 1 4.9941 -2.0991 1.7181 38 1 3.8061 -1.8774 3.0462 39 1 3.3472 0.4940 3.2006 40 1 3.4981 1.5480 1.7743 41 1 4.9173 0.6600 2.3789 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246874392.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:09 Heat of formation + Delta-G solvation = 4.635384 kcal Electronic energy + Delta-G solvation = -19829.164737 eV Core-core repulsion = 17093.574166 eV Total energy + Delta-G solvation = -2735.590571 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.93081 -39.32212 -35.80327 -33.76077 -32.83141 -31.72642 -30.35720 -28.79357 -27.26383 -26.38484 -24.15301 -23.32375 -22.04620 -21.03169 -20.45792 -18.29121 -17.67263 -17.40037 -16.45915 -16.01518 -15.63396 -15.34217 -14.79252 -14.58125 -14.45214 -14.21153 -13.84001 -13.77288 -13.47320 -13.14617 -13.00815 -12.86607 -12.74986 -12.58487 -12.21565 -12.10913 -11.96590 -11.93129 -11.82917 -11.58756 -11.40343 -11.31866 -11.05783 -10.48845 -9.74797 -9.48024 -8.94254 -8.05005 -6.25348 0.52043 0.57122 1.34220 1.37321 1.46507 2.38677 2.93271 3.14979 3.43670 3.74378 3.91145 4.02861 4.16428 4.22673 4.36136 4.40709 4.50928 4.61109 4.72218 4.73559 4.79628 4.85435 4.93313 4.99779 5.05813 5.11742 5.14661 5.19757 5.23603 5.25258 5.30499 5.40902 5.54181 5.55668 5.66437 5.68566 5.69696 5.85696 6.00730 6.19049 6.20142 6.42668 6.61652 6.95930 7.44645 8.92062 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.020790 B = 0.006294 C = 0.005529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.481841 B = 4447.900513 C = 5063.029266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.207 3.793 3 H 0.004 0.996 4 C -0.540 4.540 5 H 0.053 0.947 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.945 3.055 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.281 1.281 12 N -0.526 5.526 13 C 0.067 3.933 14 C -0.065 4.065 15 H 0.061 0.939 16 C -0.074 4.074 17 C -0.122 4.122 18 C -0.122 4.122 19 C -0.131 4.131 20 C -0.123 4.123 21 C -0.136 4.136 22 C -0.099 4.099 23 C 0.063 3.937 24 H 0.034 0.966 25 C -0.122 4.122 26 H 0.026 0.974 27 H 0.025 0.975 28 H 0.059 0.941 29 H 0.261 0.739 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.123 0.877 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.033 0.967 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.025 -11.444 12.159 17.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.100 3.900 3 H 0.022 0.978 4 C -0.579 4.579 5 H 0.071 0.929 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.771 3.229 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 N -0.249 5.249 13 C -0.061 4.061 14 C -0.084 4.084 15 H 0.080 0.920 16 C -0.075 4.075 17 C -0.140 4.140 18 C -0.140 4.140 19 C -0.149 4.149 20 C -0.141 4.141 21 C -0.155 4.155 22 C -0.137 4.137 23 C -0.046 4.046 24 H 0.052 0.948 25 C -0.179 4.179 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.141 0.859 33 H 0.160 0.840 34 H 0.164 0.836 35 H 0.158 0.842 36 H 0.136 0.864 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.690 -11.071 12.447 17.306 hybrid contribution 0.390 -0.285 -2.231 2.283 sum 5.080 -11.355 10.216 16.097 Atomic orbital electron populations 1.21605 0.97748 0.98538 0.99795 1.19181 0.92355 0.92791 0.85707 0.97818 1.21977 1.31044 1.12444 0.92425 0.92894 1.25625 0.95282 0.95591 1.01574 1.70008 1.37561 1.23961 1.23831 0.85711 0.78193 0.78773 0.80218 1.19520 1.20705 1.20706 1.63856 1.11778 1.10405 1.38897 1.22651 0.95892 0.87657 0.99922 1.21314 0.96585 0.93281 0.97267 0.92029 1.19785 0.99031 0.93903 0.94732 1.21140 0.99801 0.99650 0.93442 1.21429 0.99619 0.92362 1.00571 1.21460 0.99496 0.98057 0.95847 1.21386 0.99410 0.98769 0.94540 1.21249 1.01394 0.92535 1.00274 1.22784 0.98377 0.92243 1.00322 1.22518 0.88494 0.96040 0.97517 0.94807 1.21588 1.00922 0.96320 0.99101 0.95488 0.95635 0.92186 0.92976 0.91763 0.94122 0.85918 0.83967 0.83636 0.84182 0.86439 0.90538 0.89579 0.91773 0.94764 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.98 9.04 71.98 0.65 -5.33 16 2 C 0.21 10.63 2.28 44.17 0.10 10.73 16 3 H 0.00 0.22 8.11 -2.39 -0.02 0.20 16 4 C -0.54 -29.26 6.18 25.60 0.16 -29.10 16 5 H 0.05 2.87 6.27 -2.91 -0.02 2.85 16 6 C 0.02 1.03 5.30 84.66 0.45 1.48 16 7 N -0.91 -52.76 11.30 21.45 0.24 -52.52 16 8 Si 0.94 43.83 29.54 68.60 2.03 45.85 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 12 N -0.53 -22.58 4.80 -840.00 -4.04 -26.62 16 13 C 0.07 2.67 4.84 86.65 0.42 3.09 16 14 C -0.07 -2.21 2.93 -10.31 -0.03 -2.24 16 15 H 0.06 2.29 7.57 -2.39 -0.02 2.27 16 16 C -0.07 -2.16 4.92 -19.86 -0.10 -2.26 16 17 C -0.12 -3.18 8.13 22.27 0.18 -3.00 16 18 C -0.12 -2.59 10.05 22.27 0.22 -2.36 16 19 C -0.13 -2.56 10.05 22.27 0.22 -2.33 16 20 C -0.12 -2.66 10.05 22.27 0.22 -2.44 16 21 C -0.14 -3.63 9.68 22.27 0.22 -3.42 16 22 C -0.10 -3.11 5.89 32.02 0.19 -2.92 16 23 C 0.06 2.39 2.75 45.38 0.12 2.52 16 24 H 0.03 1.50 6.88 -2.39 -0.02 1.49 16 25 C -0.12 -3.96 9.59 71.98 0.69 -3.27 16 26 H 0.03 1.29 6.84 -2.39 -0.02 1.28 16 27 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 3.31 5.99 -2.39 -0.01 3.30 16 29 H 0.26 14.34 8.31 -92.70 -0.77 13.57 16 30 H 0.06 2.42 7.02 -2.39 -0.02 2.41 16 31 H 0.04 1.87 5.67 -2.39 -0.01 1.86 16 32 H 0.12 3.16 7.30 -2.91 -0.02 3.14 16 33 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 35 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 36 H 0.12 3.04 7.98 -2.91 -0.02 3.02 16 37 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 38 H 0.09 2.42 6.76 -2.39 -0.02 2.40 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -60.38 318.21 2.94 -57.43 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.99 Total: 16.70 kcal Atomic # 6 Polarization: -44.57 SS G_CDS: 3.72 Total: -40.85 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: -3.79 Total: -79.14 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -60.38 2.94 -57.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246874392.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.068 kcal (2) G-P(sol) polarization free energy of solvation -60.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds