Wall clock time and date at job start Mon Mar 30 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47353 * 2 1 4 4 C 1.53001 * 109.47565 * 120.00282 * 2 1 3 5 5 C 1.52998 * 117.49529 * 8.74586 * 4 2 1 6 6 C 1.53002 * 117.49607 * 300.08805 * 4 2 1 7 7 N 1.46906 * 109.47085 * 240.00628 * 2 1 3 8 8 C 1.46903 * 110.99331 * 303.40725 * 7 2 1 9 9 C 1.46891 * 111.00124 * 67.36239 * 7 2 1 10 10 H 1.08999 * 109.47343 * 301.98824 * 9 7 2 11 11 C 1.50703 * 109.47196 * 181.98953 * 9 7 2 12 12 H 1.08004 * 119.99458 * 304.18063 * 11 9 7 13 13 C 1.37874 * 120.00349 * 124.18171 * 11 9 7 14 14 N 1.31514 * 120.00337 * 179.29483 * 13 11 9 15 15 Si 1.86804 * 119.99757 * 359.29526 * 13 11 9 16 16 H 1.48501 * 109.46955 * 84.53281 * 15 13 11 17 17 H 1.48501 * 109.47034 * 204.53341 * 15 13 11 18 18 H 1.48502 * 109.47268 * 324.53121 * 15 13 11 19 19 C 1.50697 * 109.47247 * 61.98639 * 9 7 2 20 20 C 1.38242 * 119.99784 * 45.52508 * 19 9 7 21 21 C 1.38238 * 119.99813 * 179.78779 * 20 19 9 22 22 C 1.38238 * 120.00158 * 0.44054 * 21 20 19 23 23 C 1.38242 * 119.99727 * 359.81041 * 22 21 20 24 24 C 1.38230 * 120.00390 * 225.79629 * 19 9 7 25 25 H 1.08997 * 109.47549 * 58.52238 * 1 2 3 26 26 H 1.09004 * 109.46787 * 178.52649 * 1 2 3 27 27 H 1.09001 * 109.47014 * 298.52266 * 1 2 3 28 28 H 1.08994 * 115.55306 * 154.41453 * 4 2 1 29 29 H 1.08999 * 117.49980 * 0.02562 * 5 4 2 30 30 H 1.09002 * 117.49914 * 145.01977 * 5 4 2 31 31 H 1.08994 * 117.49598 * 214.97414 * 6 4 2 32 32 H 1.08991 * 117.50180 * 359.97438 * 6 4 2 33 33 H 1.09000 * 109.46971 * 65.22342 * 8 7 2 34 34 H 1.09005 * 109.46789 * 185.21636 * 8 7 2 35 35 H 1.08995 * 109.47877 * 305.21770 * 8 7 2 36 36 H 0.96996 * 119.99841 * 179.97438 * 14 13 11 37 37 H 1.07990 * 119.99909 * 359.97438 * 20 19 9 38 38 H 1.07995 * 119.99774 * 180.27276 * 21 20 19 39 39 H 1.07997 * 120.00232 * 179.83608 * 22 21 20 40 40 H 1.07995 * 119.99815 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.99870 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.0110 -1.4566 2.1100 6 6 1.6341 -0.1508 2.6096 7 7 2.0197 -0.6924 -1.1996 8 6 1.4831 -2.0579 -1.2750 9 6 1.6975 0.0677 -2.4145 10 1 0.6192 0.2141 -2.4763 11 6 2.1709 -0.6953 -3.6248 12 1 3.2060 -0.9934 -3.7043 13 6 1.2829 -1.0129 -4.6305 14 7 1.6990 -1.6666 -5.6931 15 14 -0.5115 -0.5145 -4.4837 16 1 -0.6776 0.8825 -4.9591 17 1 -1.3464 -1.4217 -5.3115 18 1 -0.9368 -0.6083 -3.0640 19 6 2.3843 1.4082 -2.3654 20 6 3.7116 1.4913 -1.9878 21 6 4.3429 2.7204 -1.9470 22 6 3.6445 3.8674 -2.2749 23 6 2.3158 3.7848 -2.6475 24 6 1.6857 2.5552 -2.6924 25 1 -0.3634 0.5366 -0.8764 26 1 -0.3633 -1.0274 -0.0264 27 1 -0.3633 0.4907 0.9029 28 1 3.0330 -1.1628 1.1646 29 1 -0.0294 -1.4269 1.7862 30 1 1.3270 -2.3818 2.5921 31 1 2.3599 -0.2174 3.4200 32 1 1.0041 0.7385 2.6147 33 1 0.4020 -2.0166 -1.4071 34 1 1.9328 -2.5787 -2.1203 35 1 1.7165 -2.5914 -0.3536 36 1 1.0741 -1.8903 -6.4003 37 1 4.2561 0.5957 -1.7277 38 1 5.3810 2.7848 -1.6563 39 1 4.1369 4.8280 -2.2404 40 1 1.7700 4.6809 -2.9033 41 1 0.6477 2.4907 -2.9836 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251469837.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:28 Heat of formation + Delta-G solvation = 59.452314 kcal Electronic energy + Delta-G solvation = -20252.643208 eV Core-core repulsion = 17519.429677 eV Total energy + Delta-G solvation = -2733.213531 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.28669 -38.00981 -35.60081 -32.60583 -30.97986 -30.16490 -29.20345 -26.93838 -25.51293 -23.72363 -22.15275 -21.98715 -21.63269 -19.73630 -18.24104 -17.16447 -16.13298 -15.72418 -15.20163 -14.72877 -14.44955 -14.00440 -13.89611 -13.24180 -13.02641 -12.80743 -12.68242 -12.39369 -11.96641 -11.59710 -11.54218 -11.46227 -11.15768 -11.09199 -10.98194 -10.62591 -10.48137 -10.33587 -10.04988 -9.95733 -9.73550 -9.59451 -9.42334 -8.72337 -8.20108 -7.80790 -7.22932 -6.20302 -4.18615 2.11682 2.17486 3.17619 3.23862 3.26800 4.04707 4.27911 4.50692 4.75690 5.07574 5.18206 5.21075 5.34721 5.53054 5.54636 5.62743 5.67076 5.73167 5.76335 5.83199 6.00127 6.01295 6.19127 6.22271 6.28285 6.28858 6.33956 6.40553 6.45682 6.52021 6.61557 6.72956 6.78392 6.87369 7.04807 7.16445 7.26154 7.40762 7.53283 7.78337 8.06418 8.14286 8.55547 8.91041 9.41571 10.91920 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013604 B = 0.010505 C = 0.007164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.731678 B = 2664.786813 C = 3907.270470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.104 3.896 3 H 0.080 0.920 4 C -0.127 4.127 5 C -0.190 4.190 6 C -0.184 4.184 7 N -0.523 5.523 8 C 0.040 3.960 9 C 0.205 3.795 10 H 0.023 0.977 11 C -0.488 4.488 12 H 0.083 0.917 13 C 0.077 3.923 14 N -0.888 5.888 15 Si 0.866 3.134 16 H -0.273 1.273 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.028 4.028 20 C -0.093 4.093 21 C -0.129 4.129 22 C -0.148 4.148 23 C -0.125 4.125 24 C -0.136 4.136 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.011 0.989 34 H 0.082 0.918 35 H 0.048 0.952 36 H 0.266 0.734 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.964 5.040 11.845 12.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.005 4.005 3 H 0.098 0.902 4 C -0.146 4.146 5 C -0.227 4.227 6 C -0.222 4.222 7 N -0.246 5.246 8 C -0.108 4.108 9 C 0.099 3.901 10 H 0.041 0.959 11 C -0.527 4.527 12 H 0.101 0.899 13 C -0.126 4.126 14 N -0.525 5.525 15 Si 0.693 3.307 16 H -0.199 1.199 17 H -0.213 1.213 18 H -0.190 1.190 19 C -0.029 4.029 20 C -0.111 4.111 21 C -0.147 4.147 22 C -0.167 4.167 23 C -0.143 4.143 24 C -0.155 4.155 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.127 0.873 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.030 0.970 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.143 0.857 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.508 4.902 11.667 12.665 hybrid contribution -1.952 0.360 -0.240 1.999 sum -2.460 5.262 11.427 12.818 Atomic orbital electron populations 1.22576 0.98941 1.01924 1.01159 1.21194 0.91462 0.97902 0.89914 0.90201 1.22331 0.99385 1.02311 0.90528 1.23115 0.99325 0.95486 1.04787 1.22921 1.03955 0.97383 0.97942 1.62441 1.58411 1.02400 1.01338 1.22130 0.96711 0.90607 1.01354 1.18904 0.93588 0.88220 0.89349 0.95946 1.20776 0.98243 1.33707 0.99958 0.89875 1.25047 0.98116 0.94326 0.95161 1.69866 1.35358 1.39067 1.08219 0.87051 0.86189 0.79158 0.78276 1.19866 1.21292 1.18992 1.20325 0.94471 0.95009 0.93069 1.20977 0.94562 0.96967 0.98643 1.21080 0.99104 0.93154 1.01330 1.20858 0.94817 0.97768 1.03234 1.20904 0.95099 0.96997 1.01294 1.20960 0.99592 0.92557 1.02357 0.92743 0.92096 0.93128 0.87343 0.88627 0.89521 0.89345 0.89288 0.97026 0.89963 0.93360 0.92384 0.85710 0.87227 0.87454 0.87372 0.87606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.10 7.09 37.16 0.26 -2.84 16 2 C 0.10 1.79 2.51 -67.71 -0.17 1.62 16 3 H 0.08 1.45 6.70 -51.93 -0.35 1.10 16 4 C -0.13 -1.86 4.63 -90.62 -0.42 -2.28 16 5 C -0.19 -2.44 9.38 -26.69 -0.25 -2.69 16 6 C -0.18 -2.28 9.89 -26.69 -0.26 -2.54 16 7 N -0.52 -10.46 4.06 -229.69 -0.93 -11.40 16 8 C 0.04 0.79 8.38 60.07 0.50 1.29 16 9 C 0.21 4.63 1.43 -70.02 -0.10 4.53 16 10 H 0.02 0.54 2.66 -51.93 -0.14 0.40 16 11 C -0.49 -12.99 7.30 -34.44 -0.25 -13.24 16 12 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 13 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 14 N -0.89 -26.08 13.96 55.43 0.77 -25.30 16 15 Si 0.87 20.83 27.20 -169.99 -4.62 16.21 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 18 H -0.26 -6.11 6.44 56.52 0.36 -5.74 16 19 C -0.03 -0.58 3.52 -104.62 -0.37 -0.95 16 20 C -0.09 -1.84 8.93 -39.58 -0.35 -2.19 16 21 C -0.13 -2.21 10.05 -39.58 -0.40 -2.61 16 22 C -0.15 -2.43 10.05 -39.58 -0.40 -2.83 16 23 C -0.12 -2.16 10.05 -39.58 -0.40 -2.56 16 24 C -0.14 -2.70 9.67 -39.59 -0.38 -3.09 16 25 H 0.05 0.99 6.62 -51.93 -0.34 0.65 16 26 H 0.06 1.01 5.32 -51.93 -0.28 0.73 16 27 H 0.05 0.72 6.97 -51.93 -0.36 0.36 16 28 H 0.11 1.65 8.14 -51.93 -0.42 1.22 16 29 H 0.10 1.25 5.86 -51.93 -0.30 0.94 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.09 1.08 7.59 -51.93 -0.39 0.69 16 33 H 0.01 0.23 6.52 -51.93 -0.34 -0.11 16 34 H 0.08 1.82 6.98 -51.93 -0.36 1.46 16 35 H 0.05 0.83 6.86 -51.93 -0.36 0.47 16 36 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.12 2.50 7.89 -52.49 -0.41 2.09 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.11 2.07 8.00 -52.49 -0.42 1.65 16 LS Contribution 317.13 15.07 4.78 4.78 Total: -1.00 -27.90 317.13 -9.28 -37.18 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.19 Total: 6.88 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: -3.08 Total: -28.35 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: -0.16 Total: -36.70 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.62 Total: 16.21 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.90 -9.28 -37.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251469837.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.631 kcal (2) G-P(sol) polarization free energy of solvation -27.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds