Wall clock time and date at job start Mon Mar 30 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47353 * 2 1 4 4 C 1.53001 * 109.47565 * 120.00282 * 2 1 3 5 5 C 1.52998 * 117.49529 * 8.74586 * 4 2 1 6 6 C 1.53002 * 117.49607 * 300.08805 * 4 2 1 7 7 N 1.46906 * 109.47085 * 240.00628 * 2 1 3 8 8 C 1.46903 * 110.99331 * 303.40725 * 7 2 1 9 9 C 1.46891 * 111.00124 * 67.36239 * 7 2 1 10 10 H 1.08999 * 109.47343 * 301.98824 * 9 7 2 11 11 C 1.50703 * 109.47196 * 181.98953 * 9 7 2 12 12 H 1.08004 * 119.99458 * 304.18063 * 11 9 7 13 13 C 1.37874 * 120.00349 * 124.18171 * 11 9 7 14 14 N 1.31514 * 120.00337 * 179.29483 * 13 11 9 15 15 Si 1.86804 * 119.99757 * 359.29526 * 13 11 9 16 16 H 1.48501 * 109.46955 * 84.53281 * 15 13 11 17 17 H 1.48501 * 109.47034 * 204.53341 * 15 13 11 18 18 H 1.48502 * 109.47268 * 324.53121 * 15 13 11 19 19 C 1.50697 * 109.47247 * 61.98639 * 9 7 2 20 20 C 1.38242 * 119.99784 * 45.52508 * 19 9 7 21 21 C 1.38238 * 119.99813 * 179.78779 * 20 19 9 22 22 C 1.38238 * 120.00158 * 0.44054 * 21 20 19 23 23 C 1.38242 * 119.99727 * 359.81041 * 22 21 20 24 24 C 1.38230 * 120.00390 * 225.79629 * 19 9 7 25 25 H 1.08997 * 109.47549 * 58.52238 * 1 2 3 26 26 H 1.09004 * 109.46787 * 178.52649 * 1 2 3 27 27 H 1.09001 * 109.47014 * 298.52266 * 1 2 3 28 28 H 1.08994 * 115.55306 * 154.41453 * 4 2 1 29 29 H 1.08999 * 117.49980 * 0.02562 * 5 4 2 30 30 H 1.09002 * 117.49914 * 145.01977 * 5 4 2 31 31 H 1.08994 * 117.49598 * 214.97414 * 6 4 2 32 32 H 1.08991 * 117.50180 * 359.97438 * 6 4 2 33 33 H 1.09000 * 109.46971 * 65.22342 * 8 7 2 34 34 H 1.09005 * 109.46789 * 185.21636 * 8 7 2 35 35 H 1.08995 * 109.47877 * 305.21770 * 8 7 2 36 36 H 0.96996 * 119.99841 * 179.97438 * 14 13 11 37 37 H 1.07990 * 119.99909 * 359.97438 * 20 19 9 38 38 H 1.07995 * 119.99774 * 180.27276 * 21 20 19 39 39 H 1.07997 * 120.00232 * 179.83608 * 22 21 20 40 40 H 1.07995 * 119.99815 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.99870 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.0110 -1.4566 2.1100 6 6 1.6341 -0.1508 2.6096 7 7 2.0197 -0.6924 -1.1996 8 6 1.4831 -2.0579 -1.2750 9 6 1.6975 0.0677 -2.4145 10 1 0.6192 0.2141 -2.4763 11 6 2.1709 -0.6953 -3.6248 12 1 3.2060 -0.9934 -3.7043 13 6 1.2829 -1.0129 -4.6305 14 7 1.6990 -1.6666 -5.6931 15 14 -0.5115 -0.5145 -4.4837 16 1 -0.6776 0.8825 -4.9591 17 1 -1.3464 -1.4217 -5.3115 18 1 -0.9368 -0.6083 -3.0640 19 6 2.3843 1.4082 -2.3654 20 6 3.7116 1.4913 -1.9878 21 6 4.3429 2.7204 -1.9470 22 6 3.6445 3.8674 -2.2749 23 6 2.3158 3.7848 -2.6475 24 6 1.6857 2.5552 -2.6924 25 1 -0.3634 0.5366 -0.8764 26 1 -0.3633 -1.0274 -0.0264 27 1 -0.3633 0.4907 0.9029 28 1 3.0330 -1.1628 1.1646 29 1 -0.0294 -1.4269 1.7862 30 1 1.3270 -2.3818 2.5921 31 1 2.3599 -0.2174 3.4200 32 1 1.0041 0.7385 2.6147 33 1 0.4020 -2.0166 -1.4071 34 1 1.9328 -2.5787 -2.1203 35 1 1.7165 -2.5914 -0.3536 36 1 1.0741 -1.8903 -6.4003 37 1 4.2561 0.5957 -1.7277 38 1 5.3810 2.7848 -1.6563 39 1 4.1369 4.8280 -2.2404 40 1 1.7700 4.6809 -2.9033 41 1 0.6477 2.4907 -2.9836 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251469837.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:28 Heat of formation + Delta-G solvation = 44.479612 kcal Electronic energy + Delta-G solvation = -20253.292473 eV Core-core repulsion = 17519.429677 eV Total energy + Delta-G solvation = -2733.862796 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.75015 -39.32988 -37.02121 -34.57555 -32.55223 -31.59394 -30.66236 -28.70015 -27.03744 -25.33280 -23.45659 -23.14368 -23.09392 -21.29226 -19.61341 -19.14367 -17.57790 -16.98479 -16.84776 -16.31327 -16.01585 -15.43476 -15.26820 -14.88641 -14.51582 -14.45691 -14.22365 -13.97697 -13.41258 -13.04769 -12.98484 -12.92301 -12.82959 -12.70839 -12.21788 -12.14567 -11.99016 -11.78452 -11.64786 -11.51155 -11.43509 -11.03792 -10.81128 -10.69766 -9.63676 -9.31727 -8.85614 -8.33705 -6.34788 0.66833 0.73333 1.24465 1.24981 1.32989 2.24886 2.85124 3.02690 3.18958 3.40156 3.90832 4.08400 4.16043 4.18778 4.25138 4.30792 4.36885 4.40424 4.44644 4.53730 4.63433 4.74938 4.82669 4.84504 4.89863 4.93275 4.94605 5.01807 5.10951 5.25583 5.32578 5.33690 5.36198 5.40170 5.43176 5.50563 5.74553 5.79547 6.01274 6.14522 6.32328 6.47334 6.69086 6.79833 7.29175 8.82846 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013604 B = 0.010505 C = 0.007164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.731678 B = 2664.786813 C = 3907.270470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.110 3.890 3 H 0.069 0.931 4 C -0.149 4.149 5 C -0.183 4.183 6 C -0.165 4.165 7 N -0.530 5.530 8 C 0.049 3.951 9 C 0.214 3.786 10 H 0.015 0.985 11 C -0.481 4.481 12 H 0.036 0.964 13 C 0.024 3.976 14 N -0.939 5.939 15 Si 0.922 3.078 16 H -0.265 1.265 17 H -0.286 1.286 18 H -0.251 1.251 19 C -0.055 4.055 20 C -0.110 4.110 21 C -0.126 4.126 22 C -0.139 4.139 23 C -0.122 4.122 24 C -0.155 4.155 25 H 0.033 0.967 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.007 0.993 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.266 0.734 37 H 0.108 0.892 38 H 0.139 0.861 39 H 0.148 0.852 40 H 0.140 0.860 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 7.352 14.308 16.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.001 3.999 3 H 0.088 0.912 4 C -0.168 4.168 5 C -0.219 4.219 6 C -0.202 4.202 7 N -0.253 5.253 8 C -0.099 4.099 9 C 0.107 3.893 10 H 0.033 0.967 11 C -0.520 4.520 12 H 0.055 0.945 13 C -0.174 4.174 14 N -0.579 5.579 15 Si 0.747 3.253 16 H -0.191 1.191 17 H -0.212 1.212 18 H -0.175 1.175 19 C -0.056 4.056 20 C -0.129 4.129 21 C -0.144 4.144 22 C -0.156 4.156 23 C -0.140 4.140 24 C -0.174 4.174 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.113 0.887 33 H 0.025 0.975 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.127 0.873 38 H 0.156 0.844 39 H 0.165 0.835 40 H 0.158 0.842 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.108 7.225 14.162 15.937 hybrid contribution -1.618 -0.292 -0.918 1.883 sum -2.727 6.933 13.244 15.196 Atomic orbital electron populations 1.22525 0.98225 1.01847 1.01461 1.21149 0.91949 0.97320 0.89439 0.91250 1.22154 0.99643 1.04326 0.90631 1.23182 0.98655 0.96480 1.03620 1.23006 1.03623 0.97263 0.96306 1.62282 1.58936 1.02380 1.01686 1.22018 0.95970 0.90694 1.01223 1.18665 0.93049 0.88885 0.88659 0.96748 1.20859 0.96019 1.33444 1.01643 0.94519 1.25744 1.02264 0.94590 0.94837 1.70008 1.36842 1.41571 1.09474 0.86133 0.81240 0.78990 0.78908 1.19053 1.21164 1.17543 1.20231 0.95274 0.94630 0.95419 1.20955 0.94240 0.97830 0.99830 1.21413 1.00491 0.92308 1.00195 1.21327 0.94387 0.99057 1.00867 1.21284 0.95766 0.96960 0.99979 1.21101 0.99750 0.93388 1.03160 0.94816 0.92171 0.90505 0.88209 0.88649 0.88149 0.87548 0.88699 0.97456 0.93404 0.90682 0.92462 0.87340 0.84353 0.83458 0.84182 0.87981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.76 7.09 71.98 0.51 -5.25 16 2 C 0.11 3.69 2.51 44.91 0.11 3.80 16 3 H 0.07 2.48 6.70 -2.39 -0.02 2.46 16 4 C -0.15 -4.11 4.63 -10.79 -0.05 -4.16 16 5 C -0.18 -4.15 9.38 30.62 0.29 -3.86 16 6 C -0.16 -3.52 9.89 30.62 0.30 -3.22 16 7 N -0.53 -21.69 4.06 -880.62 -3.58 -25.27 16 8 C 0.05 1.99 8.38 127.69 1.07 3.06 16 9 C 0.21 9.94 1.43 43.42 0.06 10.00 16 10 H 0.02 0.71 2.66 -2.39 -0.01 0.70 16 11 C -0.48 -27.02 7.30 25.60 0.19 -26.83 16 12 H 0.04 2.34 8.06 -2.91 -0.02 2.32 16 13 C 0.02 1.40 5.47 84.65 0.46 1.86 16 14 N -0.94 -57.97 13.96 21.45 0.30 -57.67 16 15 Si 0.92 44.08 27.20 68.60 1.87 45.95 16 16 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 17 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 18 H -0.25 -11.29 6.44 99.48 0.64 -10.65 16 19 C -0.05 -2.33 3.52 -19.87 -0.07 -2.40 16 20 C -0.11 -4.36 8.93 22.27 0.20 -4.16 16 21 C -0.13 -4.05 10.05 22.27 0.22 -3.83 16 22 C -0.14 -4.00 10.05 22.27 0.22 -3.78 16 23 C -0.12 -3.85 10.05 22.27 0.22 -3.63 16 24 C -0.16 -6.03 9.67 22.27 0.22 -5.82 16 25 H 0.03 1.19 6.62 -2.39 -0.02 1.18 16 26 H 0.06 1.90 5.32 -2.39 -0.01 1.89 16 27 H 0.08 1.99 6.97 -2.39 -0.02 1.98 16 28 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 29 H 0.10 2.20 5.86 -2.39 -0.01 2.19 16 30 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 1.95 7.59 -2.39 -0.02 1.93 16 33 H 0.01 0.29 6.52 -2.39 -0.02 0.27 16 34 H 0.05 2.24 6.98 -2.38 -0.02 2.22 16 35 H 0.07 2.58 6.86 -2.39 -0.02 2.56 16 36 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.11 4.53 7.89 -2.92 -0.02 4.51 16 38 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 39 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 40 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 41 H 0.10 3.94 8.00 -2.91 -0.02 3.92 16 Total: -1.00 -63.90 317.13 3.48 -60.42 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.94 Total: 24.80 kcal Atomic # 6 Polarization: -52.17 SS G_CDS: 3.96 Total: -48.21 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -3.28 Total: -82.94 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.87 Total: 45.95 kcal Total: -63.90 3.48 -60.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251469837.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.896 kcal (2) G-P(sol) polarization free energy of solvation -63.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds