Wall clock time and date at job start Mon Mar 30 2020 06:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.50407 * 2 1 4 4 C 1.53123 * 109.50341 * 120.07662 * 2 1 3 5 5 C 1.53124 * 109.16049 * 177.60100 * 4 2 1 6 6 C 1.53040 * 109.27328 * 302.34367 * 5 4 2 7 7 N 1.46840 * 109.52498 * 59.18189 * 6 5 4 8 8 C 1.46898 * 111.00330 * 174.15848 * 7 6 5 9 9 H 1.09000 * 109.47046 * 59.29764 * 8 7 6 10 10 C 1.50708 * 109.47140 * 299.29998 * 8 7 6 11 11 H 1.08000 * 119.99378 * 329.72248 * 10 8 7 12 12 C 1.37878 * 120.00009 * 149.72437 * 10 8 7 13 13 N 1.31513 * 120.00137 * 352.98551 * 12 10 8 14 14 Si 1.86794 * 119.99646 * 172.98846 * 12 10 8 15 15 H 1.48497 * 109.47357 * 59.99808 * 14 12 10 16 16 H 1.48504 * 109.47015 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47242 * 299.99433 * 14 12 10 18 18 C 1.50698 * 109.47780 * 179.29706 * 8 7 6 19 19 C 1.38242 * 119.99828 * 46.39217 * 18 8 7 20 20 C 1.38227 * 120.00151 * 179.74693 * 19 18 8 21 21 C 1.38237 * 119.99689 * 0.52757 * 20 19 18 22 22 C 1.38228 * 120.00355 * 359.74888 * 21 20 19 23 23 C 1.38228 * 120.00579 * 226.66873 * 18 8 7 24 24 C 1.46845 * 111.19764 * 298.25647 * 7 6 5 25 25 H 1.08999 * 109.47376 * 299.92174 * 1 2 3 26 26 H 1.09001 * 109.47347 * 59.92567 * 1 2 3 27 27 H 1.09004 * 109.46967 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.52517 * 57.68998 * 4 2 1 29 29 H 1.09001 * 109.57510 * 297.52995 * 4 2 1 30 30 H 1.08998 * 109.49963 * 182.40559 * 5 4 2 31 31 H 1.08998 * 109.50864 * 62.28186 * 5 4 2 32 32 H 1.09004 * 109.45973 * 179.19632 * 6 5 4 33 33 H 1.08995 * 109.46494 * 299.16121 * 6 5 4 34 34 H 0.96991 * 119.99947 * 180.02562 * 13 12 10 35 35 H 1.08009 * 119.99779 * 0.02562 * 19 18 8 36 36 H 1.08004 * 120.00247 * 180.29560 * 20 19 18 37 37 H 1.08007 * 120.00069 * 179.76549 * 21 20 19 38 38 H 1.07999 * 120.00234 * 179.97438 * 22 21 20 39 39 H 1.08001 * 119.99777 * 0.02562 * 23 18 8 40 40 H 1.09002 * 109.46392 * 301.72200 * 24 7 6 41 41 H 1.09008 * 109.46173 * 181.75990 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7234 1.2490 5 6 3.5712 -0.7714 1.2111 6 6 4.0229 -1.4729 -0.0718 7 7 3.5093 -0.7425 -1.2375 8 6 4.0372 -1.3066 -2.4869 9 1 3.7479 -2.3548 -2.5631 10 6 5.5405 -1.1990 -2.4909 11 1 6.0250 -0.3871 -1.9689 12 6 6.2970 -2.1369 -3.1610 13 7 5.7198 -3.1990 -3.6791 14 14 8.1417 -1.8989 -3.3330 15 1 8.7605 -1.8357 -1.9845 16 1 8.7195 -3.0388 -4.0893 17 1 8.4118 -0.6333 -4.0613 18 6 3.4759 -0.5441 -3.6592 19 6 3.4653 0.8382 -3.6435 20 6 2.9552 1.5377 -4.7211 21 6 2.4457 0.8550 -5.8097 22 6 2.4511 -0.5272 -5.8230 23 6 2.9664 -1.2268 -4.7478 24 6 2.0410 -0.7239 -1.2477 25 1 -0.3634 0.5126 0.8907 26 1 -0.3634 0.5150 -0.8893 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6452 -1.7386 1.2697 29 1 1.7156 -0.1872 2.1405 30 1 3.9395 -1.3226 2.0763 31 1 3.9678 0.2437 1.2297 32 1 5.1121 -1.4961 -0.1088 33 1 3.6376 -2.4924 -0.0833 34 1 6.2521 -3.8589 -4.1501 35 1 3.8597 1.3716 -2.7912 36 1 2.9513 2.6177 -4.7108 37 1 2.0437 1.4015 -6.6501 38 1 2.0527 -1.0607 -6.6734 39 1 2.9702 -2.3067 -4.7580 40 1 1.6648 -1.7469 -1.2537 41 1 1.6905 -0.2030 -2.1389 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252114896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:44 Heat of formation + Delta-G solvation = 10.121051 kcal Electronic energy + Delta-G solvation = -20115.136183 eV Core-core repulsion = 17379.783489 eV Total energy + Delta-G solvation = -2735.352695 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.98563 -37.68568 -34.40171 -32.22997 -31.55591 -29.97537 -29.72027 -26.93457 -25.78999 -23.71660 -22.36062 -21.62922 -20.86467 -19.67702 -18.99128 -16.46359 -15.79962 -15.32509 -14.54558 -14.40012 -14.14839 -13.89023 -13.59660 -13.48486 -13.12269 -12.58024 -12.47702 -12.09825 -12.07362 -11.84123 -11.49699 -11.39660 -11.22193 -10.97295 -10.84344 -10.47272 -10.38162 -10.21979 -10.16705 -9.82122 -9.81001 -9.46814 -9.29403 -8.55647 -7.99247 -7.61509 -7.15238 -6.10732 -4.13153 2.34131 2.36954 3.29208 3.33637 3.37241 4.35294 4.70693 4.98800 5.16945 5.23859 5.32942 5.39058 5.63318 5.69605 5.80560 5.87622 5.90896 5.94764 6.01467 6.08440 6.18804 6.23692 6.30988 6.36428 6.40448 6.46111 6.50374 6.58760 6.63448 6.73346 6.88418 6.91620 6.95226 7.07572 7.32898 7.37298 7.46854 7.78337 7.80598 7.88808 8.10545 8.23784 8.56694 8.98430 9.50143 10.95582 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014320 B = 0.009427 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.858399 B = 2969.568873 C = 4379.182278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.073 0.927 4 C -0.112 4.112 5 C -0.117 4.117 6 C 0.071 3.929 7 N -0.532 5.532 8 C 0.235 3.765 9 H 0.037 0.963 10 C -0.497 4.497 11 H 0.064 0.936 12 C 0.066 3.934 13 N -0.886 5.886 14 Si 0.895 3.105 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.275 1.275 18 C -0.022 4.022 19 C -0.102 4.102 20 C -0.136 4.136 21 C -0.153 4.153 22 C -0.131 4.131 23 C -0.117 4.117 24 C 0.059 3.941 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.017 0.983 34 H 0.263 0.737 35 H 0.119 0.881 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.017 0.983 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.585 4.809 4.076 9.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.091 0.909 4 C -0.150 4.150 5 C -0.155 4.155 6 C -0.058 4.058 7 N -0.257 5.257 8 C 0.129 3.871 9 H 0.055 0.945 10 C -0.535 4.535 11 H 0.083 0.917 12 C -0.137 4.137 13 N -0.523 5.523 14 Si 0.722 3.278 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.023 4.023 19 C -0.120 4.120 20 C -0.155 4.155 21 C -0.172 4.172 22 C -0.150 4.150 23 C -0.136 4.136 24 C -0.070 4.070 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.035 0.965 34 H 0.073 0.927 35 H 0.137 0.863 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.134 0.866 40 H 0.036 0.964 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.367 5.096 4.007 9.813 hybrid contribution 0.795 -0.814 -0.463 1.229 sum -6.572 4.282 3.543 8.607 Atomic orbital electron populations 1.21791 0.95998 1.01308 1.01098 1.21153 0.94156 1.00246 0.95157 0.90862 1.21615 0.96417 0.99840 0.97093 1.21628 0.94992 1.01307 0.97549 1.21816 1.01389 0.93580 0.88966 1.61983 1.04843 1.55141 1.03686 1.18450 0.94235 0.92491 0.81899 0.94497 1.20888 0.89275 1.10708 1.32636 0.91740 1.24979 0.98787 0.94573 0.95367 1.69904 1.36192 1.09834 1.36347 0.86610 0.85081 0.77768 0.78328 1.20139 1.21336 1.20078 1.20483 0.91088 0.93688 0.97030 1.20970 0.99001 0.94359 0.97717 1.21000 1.01034 0.98691 0.94741 1.20801 1.03531 0.94359 0.98461 1.20952 1.01542 0.94190 0.98274 1.21086 0.98590 0.99923 0.93950 1.22077 0.90155 0.97627 0.97105 0.93163 0.92847 0.93145 0.92837 0.92933 0.92663 0.91682 0.89569 0.96461 0.92695 0.86271 0.87689 0.87864 0.87699 0.86608 0.96445 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.20 37.15 0.34 -1.50 16 2 C -0.09 -1.34 2.88 -90.54 -0.26 -1.60 16 3 H 0.07 1.15 8.14 -51.92 -0.42 0.72 16 4 C -0.11 -1.61 5.29 -26.60 -0.14 -1.75 16 5 C -0.12 -1.85 6.09 -26.65 -0.16 -2.01 16 6 C 0.07 1.40 5.28 -3.84 -0.02 1.38 16 7 N -0.53 -11.08 4.05 -229.48 -0.93 -12.01 16 8 C 0.24 5.65 1.77 -70.01 -0.12 5.53 16 9 H 0.04 1.01 7.15 -51.93 -0.37 0.64 16 10 C -0.50 -13.03 6.94 -34.44 -0.24 -13.27 16 11 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 12 C 0.07 1.78 5.45 -17.82 -0.10 1.68 16 13 N -0.89 -24.57 12.83 55.43 0.71 -23.86 16 14 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 C -0.02 -0.49 3.46 -104.63 -0.36 -0.85 16 19 C -0.10 -2.13 8.41 -39.58 -0.33 -2.46 16 20 C -0.14 -2.52 10.05 -39.59 -0.40 -2.92 16 21 C -0.15 -2.74 10.05 -39.59 -0.40 -3.14 16 22 C -0.13 -2.51 10.05 -39.59 -0.40 -2.91 16 23 C -0.12 -2.57 9.67 -39.59 -0.38 -2.95 16 24 C 0.06 1.09 4.40 -3.84 -0.02 1.07 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.86 6.91 -51.93 -0.36 1.50 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.12 2.49 7.92 -52.48 -0.42 2.08 16 36 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 37 H 0.10 1.55 8.06 -52.48 -0.42 1.12 16 38 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 39 H 0.12 2.66 7.99 -52.49 -0.42 2.24 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 1.34 6.17 -51.92 -0.32 1.01 16 LS Contribution 324.59 15.07 4.89 4.89 Total: -1.00 -26.97 324.59 -10.27 -37.24 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.93 Total: 3.43 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: -2.99 Total: -25.72 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.22 Total: -35.87 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.97 -10.27 -37.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252114896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.361 kcal (2) G-P(sol) polarization free energy of solvation -26.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds