Wall clock time and date at job start Mon Mar 30 2020 06:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.50407 * 2 1 4 4 C 1.53123 * 109.50341 * 120.07662 * 2 1 3 5 5 C 1.53124 * 109.16049 * 177.60100 * 4 2 1 6 6 C 1.53040 * 109.27328 * 302.34367 * 5 4 2 7 7 N 1.46840 * 109.52498 * 59.18189 * 6 5 4 8 8 C 1.46898 * 111.00330 * 174.15848 * 7 6 5 9 9 H 1.09000 * 109.47046 * 59.29764 * 8 7 6 10 10 C 1.50708 * 109.47140 * 299.29998 * 8 7 6 11 11 H 1.08000 * 119.99378 * 329.72248 * 10 8 7 12 12 C 1.37878 * 120.00009 * 149.72437 * 10 8 7 13 13 N 1.31513 * 120.00137 * 352.98551 * 12 10 8 14 14 Si 1.86794 * 119.99646 * 172.98846 * 12 10 8 15 15 H 1.48497 * 109.47357 * 59.99808 * 14 12 10 16 16 H 1.48504 * 109.47015 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47242 * 299.99433 * 14 12 10 18 18 C 1.50698 * 109.47780 * 179.29706 * 8 7 6 19 19 C 1.38242 * 119.99828 * 46.39217 * 18 8 7 20 20 C 1.38227 * 120.00151 * 179.74693 * 19 18 8 21 21 C 1.38237 * 119.99689 * 0.52757 * 20 19 18 22 22 C 1.38228 * 120.00355 * 359.74888 * 21 20 19 23 23 C 1.38228 * 120.00579 * 226.66873 * 18 8 7 24 24 C 1.46845 * 111.19764 * 298.25647 * 7 6 5 25 25 H 1.08999 * 109.47376 * 299.92174 * 1 2 3 26 26 H 1.09001 * 109.47347 * 59.92567 * 1 2 3 27 27 H 1.09004 * 109.46967 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.52517 * 57.68998 * 4 2 1 29 29 H 1.09001 * 109.57510 * 297.52995 * 4 2 1 30 30 H 1.08998 * 109.49963 * 182.40559 * 5 4 2 31 31 H 1.08998 * 109.50864 * 62.28186 * 5 4 2 32 32 H 1.09004 * 109.45973 * 179.19632 * 6 5 4 33 33 H 1.08995 * 109.46494 * 299.16121 * 6 5 4 34 34 H 0.96991 * 119.99947 * 180.02562 * 13 12 10 35 35 H 1.08009 * 119.99779 * 0.02562 * 19 18 8 36 36 H 1.08004 * 120.00247 * 180.29560 * 20 19 18 37 37 H 1.08007 * 120.00069 * 179.76549 * 21 20 19 38 38 H 1.07999 * 120.00234 * 179.97438 * 22 21 20 39 39 H 1.08001 * 119.99777 * 0.02562 * 23 18 8 40 40 H 1.09002 * 109.46392 * 301.72200 * 24 7 6 41 41 H 1.09008 * 109.46173 * 181.75990 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7234 1.2490 5 6 3.5712 -0.7714 1.2111 6 6 4.0229 -1.4729 -0.0718 7 7 3.5093 -0.7425 -1.2375 8 6 4.0372 -1.3066 -2.4869 9 1 3.7479 -2.3548 -2.5631 10 6 5.5405 -1.1990 -2.4909 11 1 6.0250 -0.3871 -1.9689 12 6 6.2970 -2.1369 -3.1610 13 7 5.7198 -3.1990 -3.6791 14 14 8.1417 -1.8989 -3.3330 15 1 8.7605 -1.8357 -1.9845 16 1 8.7195 -3.0388 -4.0893 17 1 8.4118 -0.6333 -4.0613 18 6 3.4759 -0.5441 -3.6592 19 6 3.4653 0.8382 -3.6435 20 6 2.9552 1.5377 -4.7211 21 6 2.4457 0.8550 -5.8097 22 6 2.4511 -0.5272 -5.8230 23 6 2.9664 -1.2268 -4.7478 24 6 2.0410 -0.7239 -1.2477 25 1 -0.3634 0.5126 0.8907 26 1 -0.3634 0.5150 -0.8893 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6452 -1.7386 1.2697 29 1 1.7156 -0.1872 2.1405 30 1 3.9395 -1.3226 2.0763 31 1 3.9678 0.2437 1.2297 32 1 5.1121 -1.4961 -0.1088 33 1 3.6376 -2.4924 -0.0833 34 1 6.2521 -3.8589 -4.1501 35 1 3.8597 1.3716 -2.7912 36 1 2.9513 2.6177 -4.7108 37 1 2.0437 1.4015 -6.6501 38 1 2.0527 -1.0607 -6.6734 39 1 2.9702 -2.3067 -4.7580 40 1 1.6648 -1.7469 -1.2537 41 1 1.6905 -0.2030 -2.1389 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252114896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:44 Heat of formation + Delta-G solvation = -3.177855 kcal Electronic energy + Delta-G solvation = -20115.712867 eV Core-core repulsion = 17379.783489 eV Total energy + Delta-G solvation = -2735.929379 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.57545 -39.17040 -36.03827 -34.05470 -33.01156 -31.55366 -31.25973 -28.71503 -27.14771 -25.49749 -23.86407 -23.19641 -22.29731 -21.33494 -20.41613 -18.43578 -17.39490 -17.03019 -16.24305 -15.94736 -15.76370 -15.36162 -14.98197 -14.90977 -14.66039 -14.17659 -14.03333 -13.68296 -13.54660 -13.32565 -13.10082 -12.84721 -12.78119 -12.66736 -12.47459 -12.07174 -11.95161 -11.82694 -11.63506 -11.43527 -11.31989 -10.98143 -10.93510 -10.59589 -9.57361 -9.26599 -8.92030 -8.14750 -6.24172 0.74550 0.79509 1.38427 1.40572 1.47329 2.38425 3.03879 3.24946 3.41715 3.92619 4.06430 4.08528 4.27398 4.31547 4.33640 4.44508 4.53296 4.61170 4.66831 4.77249 4.79584 4.88991 4.93621 4.95244 4.99033 5.02652 5.15543 5.19484 5.24297 5.32159 5.37047 5.42034 5.47144 5.50515 5.60961 5.69312 5.80366 5.85097 6.09772 6.14133 6.37234 6.47379 6.79344 6.93838 7.42214 8.90020 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014320 B = 0.009427 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.858399 B = 2969.568873 C = 4379.182278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 H 0.074 0.926 4 C -0.108 4.108 5 C -0.108 4.108 6 C 0.070 3.930 7 N -0.531 5.531 8 C 0.243 3.757 9 H -0.011 1.011 10 C -0.502 4.502 11 H 0.056 0.944 12 C 0.018 3.982 13 N -0.917 5.917 14 Si 0.952 3.048 15 H -0.268 1.268 16 H -0.285 1.285 17 H -0.274 1.274 18 C -0.044 4.044 19 C -0.113 4.113 20 C -0.129 4.129 21 C -0.143 4.143 22 C -0.130 4.130 23 C -0.143 4.143 24 C 0.063 3.937 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.059 0.941 33 H -0.003 1.003 34 H 0.261 0.739 35 H 0.113 0.887 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.131 0.869 39 H 0.088 0.912 40 H -0.001 1.001 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.608 7.362 4.234 12.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.102 4.102 3 H 0.092 0.908 4 C -0.145 4.145 5 C -0.146 4.146 6 C -0.058 4.058 7 N -0.255 5.255 8 C 0.136 3.864 9 H 0.006 0.994 10 C -0.541 4.541 11 H 0.074 0.926 12 C -0.182 4.182 13 N -0.555 5.555 14 Si 0.777 3.223 15 H -0.193 1.193 16 H -0.211 1.211 17 H -0.199 1.199 18 C -0.045 4.045 19 C -0.132 4.132 20 C -0.146 4.146 21 C -0.161 4.161 22 C -0.148 4.148 23 C -0.162 4.162 24 C -0.065 4.065 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.015 0.985 34 H 0.070 0.930 35 H 0.131 0.869 36 H 0.159 0.841 37 H 0.164 0.836 38 H 0.149 0.851 39 H 0.107 0.893 40 H 0.017 0.983 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.398 7.660 4.182 12.112 hybrid contribution 1.044 -1.588 -0.543 1.977 sum -7.355 6.072 3.638 10.208 Atomic orbital electron populations 1.21741 0.93716 1.01694 1.02429 1.21140 0.95998 0.99596 0.93483 0.90769 1.21611 0.94881 1.00134 0.97917 1.21573 0.96429 1.01028 0.95541 1.21838 0.99763 0.93276 0.90953 1.62008 1.06451 1.54304 1.02711 1.18174 0.93509 0.90408 0.84275 0.99352 1.21070 0.90727 1.10142 1.32140 0.92600 1.25691 1.02695 0.94415 0.95377 1.70048 1.37389 1.10613 1.37482 0.85703 0.80514 0.77540 0.78500 1.19297 1.21087 1.19892 1.20341 0.92863 0.94689 0.96581 1.20969 0.99971 0.93409 0.98843 1.21391 0.99129 1.00524 0.93598 1.21264 1.01797 0.93741 0.99253 1.21252 1.00467 0.95261 0.97826 1.21041 1.00740 0.98902 0.95495 1.22109 0.88465 0.96972 0.98962 0.90627 0.92734 0.93259 0.93088 0.89668 0.90622 0.91370 0.92228 0.98499 0.92977 0.86863 0.84052 0.83612 0.85093 0.89346 0.98312 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 9.20 71.98 0.66 -2.54 16 2 C -0.08 -2.41 2.88 -10.74 -0.03 -2.44 16 3 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 4 C -0.11 -2.89 5.29 30.68 0.16 -2.73 16 5 C -0.11 -3.32 6.09 30.65 0.19 -3.13 16 6 C 0.07 2.90 5.28 86.33 0.46 3.36 16 7 N -0.53 -23.14 4.05 -879.94 -3.57 -26.71 16 8 C 0.24 12.46 1.77 43.43 0.08 12.54 16 9 H -0.01 -0.68 7.15 -2.39 -0.02 -0.69 16 10 C -0.50 -27.67 6.94 25.60 0.18 -27.50 16 11 H 0.06 3.10 7.82 -2.91 -0.02 3.07 16 12 C 0.02 1.01 5.45 84.66 0.46 1.47 16 13 N -0.92 -53.70 12.83 21.45 0.28 -53.43 16 14 Si 0.95 44.34 29.54 68.60 2.03 46.37 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 16 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 17 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 18 C -0.04 -2.05 3.46 -19.87 -0.07 -2.12 16 19 C -0.11 -4.70 8.41 22.27 0.19 -4.51 16 20 C -0.13 -4.38 10.05 22.27 0.22 -4.15 16 21 C -0.14 -4.61 10.05 22.27 0.22 -4.38 16 22 C -0.13 -4.80 10.05 22.27 0.22 -4.58 16 23 C -0.14 -6.52 9.67 22.27 0.22 -6.31 16 24 C 0.06 2.40 4.40 86.32 0.38 2.78 16 25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.06 2.74 6.91 -2.38 -0.02 2.72 16 33 H 0.00 -0.15 8.14 -2.39 -0.02 -0.16 16 34 H 0.26 14.67 8.31 -92.71 -0.77 13.89 16 35 H 0.11 4.74 7.92 -2.91 -0.02 4.72 16 36 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 37 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 38 H 0.13 4.07 8.06 -2.91 -0.02 4.04 16 39 H 0.09 4.41 7.99 -2.91 -0.02 4.39 16 40 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.06 2.38 6.17 -2.38 -0.01 2.36 16 Total: -1.00 -62.15 324.59 3.24 -58.91 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.97 Total: 19.10 kcal Atomic # 6 Polarization: -47.79 SS G_CDS: 3.54 Total: -44.25 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -3.29 Total: -80.13 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -62.15 3.24 -58.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252114896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.734 kcal (2) G-P(sol) polarization free energy of solvation -62.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds