Wall clock time and date at job start Mon Mar 30 2020 06:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.50197 * 2 1 4 4 C 1.53117 * 109.50564 * 239.92463 * 2 1 3 5 5 C 1.53119 * 109.16104 * 182.40558 * 4 2 1 6 6 C 1.53035 * 109.27849 * 57.65366 * 5 4 2 7 7 N 1.46853 * 109.52220 * 300.81591 * 6 5 4 8 8 C 1.46898 * 111.00182 * 185.83824 * 7 6 5 9 9 H 1.08999 * 109.47371 * 296.05400 * 8 7 6 10 10 C 1.50698 * 109.47235 * 176.04935 * 8 7 6 11 11 H 1.08001 * 119.99918 * 305.26186 * 10 8 7 12 12 C 1.37877 * 119.99772 * 124.98417 * 10 8 7 13 13 N 1.31523 * 119.99665 * 173.40095 * 12 10 8 14 14 Si 1.86798 * 120.00213 * 353.40419 * 12 10 8 15 15 H 1.48505 * 109.47182 * 84.67325 * 14 12 10 16 16 H 1.48508 * 109.47064 * 204.66918 * 14 12 10 17 17 H 1.48493 * 109.47063 * 324.67166 * 14 12 10 18 18 C 1.50705 * 109.46720 * 56.05099 * 8 7 6 19 19 C 1.38228 * 120.00060 * 46.52140 * 18 8 7 20 20 C 1.38239 * 119.99837 * 179.74463 * 19 18 8 21 21 C 1.38233 * 120.00047 * 0.54842 * 20 19 18 22 22 C 1.38237 * 119.99649 * 359.70136 * 21 20 19 23 23 C 1.38229 * 120.00318 * 0.02718 * 22 21 20 24 24 C 1.46858 * 111.19401 * 61.74841 * 7 6 5 25 25 H 1.08995 * 109.46804 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47115 * 300.08277 * 1 2 3 27 27 H 1.08997 * 109.46668 * 60.07927 * 1 2 3 28 28 H 1.08999 * 109.52515 * 62.49308 * 4 2 1 29 29 H 1.09007 * 109.51959 * 302.31027 * 4 2 1 30 30 H 1.08996 * 109.50442 * 297.70879 * 5 4 2 31 31 H 1.08999 * 109.53349 * 177.61040 * 5 4 2 32 32 H 1.08997 * 109.46355 * 180.80735 * 6 5 4 33 33 H 1.09000 * 109.46487 * 60.83366 * 6 5 4 34 34 H 0.96999 * 119.99546 * 180.02562 * 13 12 10 35 35 H 1.08005 * 120.00199 * 359.97438 * 19 18 8 36 36 H 1.07997 * 119.99724 * 180.27434 * 20 19 18 37 37 H 1.07999 * 120.00172 * 179.72867 * 21 20 19 38 38 H 1.08001 * 119.99261 * 179.97438 * 22 21 20 39 39 H 1.07999 * 120.00303 * 179.97438 * 23 22 21 40 40 H 1.08993 * 109.46407 * 58.27084 * 24 7 6 41 41 H 1.09003 * 109.45622 * 178.24207 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2490 5 6 3.5713 -0.7714 -1.2110 6 6 4.0230 -1.4730 0.0719 7 7 3.5093 -0.7424 1.2377 8 6 4.0372 -1.3066 2.4871 9 1 3.6793 -2.3296 2.6036 10 6 3.5675 -0.4742 3.6521 11 1 3.7549 0.5893 3.6663 12 6 2.8934 -1.0694 4.6972 13 7 2.5977 -0.3710 5.7718 14 14 2.4001 -2.8677 4.5871 15 1 3.5386 -3.7204 5.0139 16 1 1.2354 -3.1168 5.4743 17 1 2.0341 -3.1957 3.1859 18 6 5.5436 -1.3036 2.4425 19 6 6.2204 -0.1731 2.0248 20 6 7.6024 -0.1686 1.9889 21 6 8.3071 -1.2984 2.3600 22 6 7.6300 -2.4307 2.7728 23 6 6.2483 -2.4334 2.8140 24 6 2.0409 -0.7238 1.2478 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5151 0.8892 27 1 -0.3632 0.5126 -0.8907 28 1 1.7157 -0.1863 -2.1399 29 1 1.6453 -1.7387 -1.2696 30 1 3.9679 0.2436 -1.2297 31 1 3.9402 -1.3223 -2.0761 32 1 5.1121 -1.4962 0.1090 33 1 3.6375 -2.4925 0.0834 34 1 2.1238 -0.7899 6.5072 35 1 5.6697 0.7080 1.7299 36 1 8.1312 0.7162 1.6668 37 1 9.3866 -1.2963 2.3278 38 1 8.1806 -3.3135 3.0623 39 1 5.7193 -3.3181 3.1361 40 1 1.6648 -1.7468 1.2538 41 1 1.6906 -0.2029 2.1389 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252114897.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:47 Heat of formation + Delta-G solvation = 13.207397 kcal Electronic energy + Delta-G solvation = -20161.013703 eV Core-core repulsion = 17425.794842 eV Total energy + Delta-G solvation = -2735.218861 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.16180 -37.85211 -34.48582 -32.44321 -31.37369 -30.32524 -30.11251 -27.06760 -26.03572 -23.80807 -22.09454 -21.71815 -21.34223 -19.53399 -19.06566 -16.96979 -16.12792 -15.34668 -14.86897 -14.36435 -14.20537 -14.02501 -13.59269 -13.53972 -13.07853 -12.80471 -12.68507 -12.47223 -12.11797 -12.02239 -11.95978 -11.38457 -11.24584 -11.06624 -10.96482 -10.61178 -10.38750 -10.25946 -10.03697 -9.98770 -9.74679 -9.57514 -9.45874 -8.69039 -8.20945 -7.82734 -7.25895 -6.20790 -4.18331 2.10681 2.16016 3.18179 3.25825 3.27420 4.28406 4.48384 4.80764 5.15070 5.18143 5.30928 5.34985 5.53357 5.57694 5.59092 5.71025 5.84224 5.91332 5.97070 6.04024 6.05294 6.15455 6.18887 6.25502 6.29397 6.32451 6.34918 6.50373 6.50860 6.57396 6.62877 6.72827 6.81567 6.91324 7.00385 7.15384 7.23759 7.42397 7.52124 7.77154 8.05343 8.14827 8.55114 8.91644 9.41577 10.91374 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013874 B = 0.010352 C = 0.006882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.636226 B = 2704.148420 C = 4067.447316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.075 0.925 4 C -0.113 4.113 5 C -0.113 4.113 6 C 0.048 3.952 7 N -0.526 5.526 8 C 0.211 3.789 9 H 0.014 0.986 10 C -0.488 4.488 11 H 0.084 0.916 12 C 0.078 3.922 13 N -0.886 5.886 14 Si 0.865 3.135 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.267 1.267 18 C -0.028 4.028 19 C -0.093 4.093 20 C -0.129 4.129 21 C -0.148 4.148 22 C -0.124 4.124 23 C -0.136 4.136 24 C 0.071 3.929 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.016 0.984 34 H 0.266 0.734 35 H 0.125 0.875 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.014 0.986 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.524 -2.226 -11.117 11.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.094 0.906 4 C -0.150 4.150 5 C -0.150 4.150 6 C -0.080 4.080 7 N -0.251 5.251 8 C 0.105 3.895 9 H 0.032 0.968 10 C -0.527 4.527 11 H 0.102 0.898 12 C -0.126 4.126 13 N -0.523 5.523 14 Si 0.693 3.307 15 H -0.199 1.199 16 H -0.212 1.212 17 H -0.192 1.192 18 C -0.029 4.029 19 C -0.112 4.112 20 C -0.147 4.147 21 C -0.166 4.166 22 C -0.143 4.143 23 C -0.154 4.154 24 C -0.057 4.057 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.143 0.857 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.033 0.967 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.581 -1.751 -10.946 11.382 hybrid contribution -0.535 -1.925 0.289 2.019 sum 2.046 -3.676 -10.657 11.457 Atomic orbital electron populations 1.21779 0.95849 1.01259 1.01302 1.21195 0.94406 1.00423 0.94871 0.90611 1.21627 0.95899 0.99936 0.97579 1.21544 0.95550 1.01244 0.96712 1.22094 0.99959 0.94475 0.91505 1.62167 1.07352 1.53708 1.01839 1.18813 0.87431 0.94371 0.88836 0.96838 1.20765 1.35155 0.96497 1.00235 0.89803 1.25048 0.95248 0.97249 0.95063 1.69885 1.39950 1.36702 1.05742 0.87042 0.78929 0.86557 0.78169 1.19922 1.21215 1.19216 1.20302 0.97138 0.92316 0.93151 1.20972 0.93042 0.98447 0.98714 1.21076 0.94666 0.97652 1.01285 1.20861 0.98743 0.94088 1.02942 1.20907 0.94267 0.97933 1.01145 1.20976 0.93981 0.98298 1.02168 1.21934 0.87945 0.97702 0.98072 0.93292 0.92420 0.93234 0.92756 0.92930 0.91430 0.92757 0.91191 0.96609 0.92368 0.85715 0.87197 0.87421 0.87326 0.87490 0.96737 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.20 37.16 0.34 -1.67 16 2 C -0.09 -1.44 2.88 -90.54 -0.26 -1.70 16 3 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 4 C -0.11 -1.61 5.29 -26.61 -0.14 -1.75 16 5 C -0.11 -1.67 6.09 -26.65 -0.16 -1.83 16 6 C 0.05 0.86 5.14 -3.83 -0.02 0.84 16 7 N -0.53 -10.79 4.05 -229.47 -0.93 -11.72 16 8 C 0.21 4.87 1.65 -70.02 -0.12 4.75 16 9 H 0.01 0.34 4.47 -51.93 -0.23 0.11 16 10 C -0.49 -13.07 7.44 -34.44 -0.26 -13.33 16 11 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 12 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 13 N -0.89 -26.04 13.96 55.43 0.77 -25.26 16 14 Si 0.87 20.98 27.04 -169.99 -4.60 16.38 16 15 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.29 6.67 56.52 0.38 -5.91 16 18 C -0.03 -0.60 3.46 -104.62 -0.36 -0.96 16 19 C -0.09 -1.85 8.50 -39.58 -0.34 -2.19 16 20 C -0.13 -2.21 10.05 -39.58 -0.40 -2.61 16 21 C -0.15 -2.43 10.05 -39.58 -0.40 -2.82 16 22 C -0.12 -2.16 10.05 -39.59 -0.40 -2.55 16 23 C -0.14 -2.72 9.67 -39.58 -0.38 -3.10 16 24 C 0.07 1.42 4.55 -3.83 -0.02 1.40 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.26 6.26 -51.93 -0.32 0.94 16 33 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.12 2.51 7.92 -52.48 -0.42 2.10 16 36 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 37 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 39 H 0.11 2.11 7.99 -52.49 -0.42 1.69 16 40 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.09 2.11 6.88 -51.93 -0.36 1.75 16 LS Contribution 320.88 15.07 4.84 4.84 Total: -1.00 -28.16 320.88 -9.75 -37.90 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.83 Total: 3.32 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: -3.00 Total: -25.46 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: -0.16 Total: -36.98 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.60 Total: 16.38 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.16 -9.75 -37.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252114897.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.110 kcal (2) G-P(sol) polarization free energy of solvation -28.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds